BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48600.2
Length=839
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897711 jgi|Araly1|897711|Al_scaffold_0005_1677 828 0.0
> Ahg897711 jgi|Araly1|897711|Al_scaffold_0005_1677
Length=615
Score = 828 bits (448), Expect = 0.0
Identities = 520/555 (94%), Gaps = 4/555 (1%)
Strand=Plus/Plus
Query 78 ATGTCGCCAATTTCTAAGATTCTAGGAGGATGCAGGACACTGATGGCGAAGGCGGTGACT 137
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGCCAATTTCTAAAATTCTCGGAGGATGCAGGACACTGATGGCGAAGGCGGTGACT 60
Query 138 AATGCGACGGCTACCGGCGCCGGCGTTGATAGAAGAGGAGGAATTCATAAGATTTTTCCA 197
||||||||||||| |||||||||| ||||| |||||||| ||| |||||||||||||||
Sbjct 61 AATGCGACGGCTAACGGCGCCGGCTTTGATCCAAGAGGAGAAATACATAAGATTTTTCCA 120
Query 198 GTCTCAGAGTCGCTGGCTAGATTCGTCGGCCAAAGCGAAGTCTCTTTTTCCACCGCCATG 257
||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||
Sbjct 121 GTCTCAGAGTCGCTGGCTAGATTCGTCGGCCAAAGCGAAATCTCTTTTCCCATCGCCATG 180
Query 258 GAGAAAGTGGAGCAGTATACCGATGATCACAATCTTTGGAATCCGGAGAATATAGAGGAG 317
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 181 GAGAAAGTGGAGCAGTATACCGATGATCACGATCTCTGGAATCCGGAGAATATAGAGGAG 240
Query 318 ATACTGTGCGATGATAACTTGAAGACGATTTTCGATGGCCAAGACAAAGTCGTCGGAGTC 377
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 241 ATACTGTGCGATGATAACTTGAAGACGATATTCGATGGCAAAGACAAAGTCGTCGGAGTC 300
Query 378 AGAGAGATGACGGAGCTTTTGTTGCGACATTTTCCTAACGTTAG-AACTATGTCGGCGAA 436
||||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||
Sbjct 301 AGAGAGATGACGGAGCTCTTGTTGCGACATTTTCCTAACGTCAGGAA-TATGTCGGCGAA 359
Query 437 GGTGAAGGCTACCGGTGGAGGTACTATAGAAAAATGGGGGTTCAATGATATTGTGAAAGT 496
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 360 GGTGAAGGCTACCGGTGGAGCTACTATAGAAAAATGGGGGTTCAATGACATTGTGAAAGT 419
Query 497 CTCAGAGCCGCTGGCTAGATTCGTCGGCCA-AAGCGAAATCTCTTTTGACGCCGCCTTGA 555
||||||||| ||||||||||||||||| | ||||||||||||||||| |||||||||||
Sbjct 420 CTCAGAGCCTCTGGCTAGATTCGTCGGG-AGAAGCGAAATCTCTTTTGTCGCCGCCTTGA 478
Query 556 GAAAATTGCTAGATTATGCCTTTGATCACAAGCTCGTAGATGAGGGTGTTACTCTGCTCG 615
||||||||||||| ||| || |||||||| ||| ||||||||||||||||||||||||
Sbjct 479 GAAAATTGCTAGAGTATACCAAAGATCACAACCTCTTAGATGAGGGTGTTACTCTGCTCG 538
Query 616 AGTTTCCTTGGATTA 630
||||||| ||| |||
Sbjct 539 AGTTTCCCTGGGTTA 553
Score = 86.1 bits (46), Expect = 4e-16
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 494 AGTCTCAGAGCCGCTGGCTAGATTCGTCGGCCAAAGCGAAATCTCTTTT 542
|||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGTCTCAGAGTCGCTGGCTAGATTCGTCGGCCAAAGCGAAATCTCTTTT 168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31032054438
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5