BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48610.1
Length=1794
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897712 jgi|Araly1|897712|Al_scaffold_0005_1678 2471 0.0
> Ahg897712 jgi|Araly1|897712|Al_scaffold_0005_1678
Length=1566
Score = 2471 bits (1338), Expect = 0.0
Identities = 1487/1561 (95%), Gaps = 2/1561 (0%)
Strand=Plus/Plus
Query 124 ATGAAACCATCATCAGCTTCAAGATTTTCTTTAACTTTCTCACACTTTCTCACACTCTAC 183
|||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 1 ATGAAACCATCATCAGCTTCAAGATTTTATTTATCTTTCTCACACTTTCTCATACTCTTT 60
Query 184 TGTCTTCTCACACAAACACATGTAGCTCAAGGATCTCATCAATGGCAATCACCAATCAAA 243
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TGTCTTCTCACACAAACCCATGTAGCTCAAGGATCCCATCAATGGCAATCACCAATCAAA 120
Query 244 ACCGTCGTCGTTTTAGTGTTGGAGAATCGATCTTTCGATCATCTCTTAGGATGGATGAAG 303
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACCGTCGTCGTTTTAGTACTAGAGAATCGATCTTTCGATCATCTCTTAGGATGGATGAAG 180
Query 304 AACTCAGTAAACCCGACAATAAACGGTGTAACGGGTCAAGAATGTAACCCGGTTCCGAAT 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AACTCAGTAAACCCGACAATAAACGGTGTAACGGGTCAAGAATGTAACCCGGTTCCGAAT 240
Query 364 TCTACACAAACTATATGTTTCACTAGTGATGCTGAGTTTGTGGATCCGGATCCGGGTCAT 423
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCACACAAACCATATGTTTCACTAGTGATGCTGAGTTTGTGGATCCGGATCCGGGTCAT 300
Query 424 TCGTTTGAAGCTGTTGAGCAACAAGTATTCGGGTCTGGGCCGGGTCAGATCCCGTCCATG 483
||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||| |||
Sbjct 301 TCGTTTGAAGCTGTTGAGCAACAAGTATTTGGGTCCGGGTCGGGTCAGATCCCGTCGATG 360
Query 484 ATGGGTTTCGTTGAGCAAGCGCTTTCCATGCCGGGAAATTTGTCGGAGACTGTAATGAAA 543
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGGGTTTTGTTGAGCAAGCGCTTTCCATGCCGGGAAATTTGTCGGAGACTGTAATGAAA 420
Query 544 GGCTTTAGGCCTGAAGCTGTTCCGGTTTATGCTGAGCTGGTTAAGGAATTCGCTGTGTTC 603
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 421 GGCTTTAGGCCTGAAGCTGTTCCGGTTTATGCCGAGCTGGTCAAAGAATTCGCTGTGTTC 480
Query 604 GACCGGTGGTTTTCTTCAATTCCCGGTCCGACTCAACCAAACCGGTTATTTGTCTATTCG 663
|||||||||||||| || |||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 481 GACCGGTGGTTTTCATCGATTCCCGGACCGACTCAACCGAACCGGTTATTTGTTTATTCG 540
Query 664 GCTACCTCACATGGTTCCACTAGCCATGTCAAGAAACAACTCGCTCAAGGGTATCCACAG 723
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCTACTTCACATGGTTCAACAAGCCATGTCAAGAAACAACTCGCTCAAGGGTATCCACAG 600
Query 724 AAGACGATATTTGATTCGCTTCATAGCAACGACATCGACTTCGGAATATACTTTCAGAAT 783
||||| || || |||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 601 AAGACTATCTTCGATTCGCTCCACAGCAACGACATTGACTTCGGAATATACTTTCAGAAT 660
Query 784 ATTCCGACCACATTATTCTACCGTAATCTCCGACAGCTAAAGTACATTTTCAATTTGCAT 843
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 661 ATTCCGACCACATTATTCTACCGGAATCTCCGACAGCTAAAATACATTTTCAATTTGCAT 720
Query 844 CAATACGATTTGAAATTCAAGAAAGACGCGGCCAAAGGAAAGTTACCGAGCTTAACCGTA 903
||||||||| | ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 721 CAATACGATCTAAAATTCAAGAAAGACGCAGCAAAAGGAAAGTTACCGAGCTTAACCGTC 780
Query 904 ATCGAACCGAGGTATTTCGATCTCAAAGGTTTACCGGCTAACGATGATCACCCGTCGCAT 963
|||||||||||||||||||| ||||| || |||||||| |||||||||||||| ||||||
Sbjct 781 ATCGAACCGAGGTATTTCGACCTCAAGGGCTTACCGGCCAACGATGATCACCCTTCGCAT 840
Query 964 GACGTGGCTAACGGTCAAAAGCTGGTTAAAGAAGTGTACGAGGCACTTAGGTCGAGTCCA 1023
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 841 GACGTGGCTAACGGTCAAAAGCTGGTTAAAGAAGTGTACGAGGCACTTAGGGCGAGTCCA 900
Query 1024 CAGTGGAACGAGACGCTCCTAGTTATAACCTATGATGAGCATGGTGGGTTCTATGATCAC 1083
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 901 CAGTGGAACGAGACGCTCCTAGTCATAACTTATGATGAGCATGGTGGGTTCTATGATCAT 960
Query 1084 GTCAAGACTCCTTATGTCGGTATACCAAATCCCG-ATGGGAATACTGGACCGGCTCCTGG 1142
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 961 GTCAAGACTCCTTATGTCGGTATACCAAA-CCCGGATGGGAATACTGGACCGGCTCCTGG 1019
Query 1143 TTTCTTTAAATTCGACCGGTTAGGTGTTCGTGTTCCTACCATTATGGTTTCGCCTTGGAT 1202
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1020 TTTCTTTAAATTCGACCGGTTAGGTGTTCGGGTTCCTACCATTATGGTTTCTCCTTGGAT 1079
Query 1203 TCAAAAAGGAACCGTCGTAAGTGAAGCAAAAGGACCAACAGAGAGCTCAGAGTACGAGCA 1262
| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TAAAAAAGGAACCGTGGTGAGTGAAGCAAAAGGACCAACAGAGAGCTCAGAGTACGAGCA 1139
Query 1263 TTCATCAATACCAGCGACAATCAAGAAACTCTTCAATCTCTCTTCCAATTTCTTAACACA 1322
||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1140 TTCATCAATACCAGCAACCATCAAGAAACTATTCAATCTCTCTTCCAATTTCTTAACACA 1199
Query 1323 TAGAGATGCATGGGCTGCTACTTTCGAAGACGTTGTATCTCACTTAACCACTCCTCGAAC 1382
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1200 TAGAGATGCTTGGGCTGCTACTTTCGAAGACGTTGTTTCTCACTTAACCACTCCTCGAAC 1259
Query 1383 CGATTGTCCCATGACTCTACCTGAAGTTGCACCTATGAGAGCCACTGAGCCTAAAGAAGA 1442
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1260 CGATTGTCCCATGACTCTACCTGAAGTTGCACCCATGAGAGCCACTGAGCCTAAAGAGGA 1319
Query 1443 CGCTGCTCTTTCTGAGTTTCAAGGTGAAGTGGTTCAGCTTGCAGCGGTTCTCAATGGTGA 1502
||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1320 CGCAGCTCTTTCTGAGTTTCAGGGTGAAGTAGTTCAGCTTGCAGCGGTTCTCAATGGTGA 1379
Query 1503 TCACTTCCTCAGTAGCTTCCCGGAAGAAATTGGAAAGAAGATGACTGTGAAACAAGCTCA 1562
|||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct 1380 TCACTTCCTCAGTAGCTTCCCGGACGAAGTTGGGAAGAAGATGACTGTGAAACAAGCTCA 1439
Query 1563 TGAGTATGTCAAAGGAGCTACTTCTCGGTTCATTAGAGCTAGTAAAGAGGCAATGAAGCT 1622
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TGAATATGTCAAAGGAGCTACATCTCGGTTCATTAGAGCTAGTAAAGAGGCAATGAAGCT 1499
Query 1623 TGGTGCCGATAAATCTGCTATTGTCGATATGCGATCTTCGCTCACTACACGGCCACACAA 1682
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1500 TGGTGCCGATAAATCTGCCATTGTCGATATGCGATCTTCGCTCACTACACGGCCACGCAA 1559
Query 1683 C 1683
|
Sbjct 1560 C 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67343553160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5