BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G48640.1

Length=675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937022 jgi|Araly1|937022|scaffold_501213.1                        388    2e-107


> Ahg937022 jgi|Araly1|937022|scaffold_501213.1
Length=427

 Score =  388 bits (210),  Expect = 2e-107
 Identities = 336/396 (85%), Gaps = 11/396 (3%)
 Strand=Plus/Plus

Query  276  GAAGTTATCTGAA-AAGTTCATGTACACGGACGAGTTCGCGACACAGTATGAGTCTGTTT  334
            ||| |||| | || || |||||| |||||||||||||||||||||||||||||||||| |
Sbjct  5    GAATTTAT-TCAACAATTTCATGCACACGGACGAGTTCGCGACACAGTATGAGTCTGTCT  63

Query  335  ACAGGGATCATGTCATGCTCTTAGGAAAGATCCGTGAGCTAGAAGTAGTGCTCGAGAAGA  394
            ||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct  64   ACAAGGATCATGTCATGCTTTTAGAAAAGATCCGTGAGCTAGAAGTAGTGCTCGAGAAGA  123

Query  395  AGTATAAGCATGCAAAGAGAAAAAGGATAATGAAGTTTGGTTTTGGCGCGGTTATCTTTA  454
            || ||||||||||||||| ||  |||| | ||  | ||||||||  ||||| | | | | 
Sbjct  124  AGCATAAGCATGCAAAGACAAGTAGGAGAGTGGCGGTTGGTTTTCTCGCGGCTGTGTCTC  183

Query  455  TCCCTTGTT-TCGTCGTAGCGGTCGTAGGC-CAATTAAATCCCGCGTTTGGAATGGCTGG  512
            ||||| ||| ||| ||||| |||||||| | || | ||||||||||||||||||||||||
Sbjct  184  TCCCT-GTTGTCGCCGTAGTGGTCGTAGCCGCA-TCAAATCCCGCGTTTGGAATGGCTGG  241

Query  513  CCAGGGAGGGGAAAGGGGCGTT-GAGGTGGCGAAGAAGCTCTATAAATTGACGATGGAAG  571
            ||||| |||||||| |  | || |||  |  ||||||| ||||| ||||||||| | |||
Sbjct  242  CCAGGCAGGGGAAAAGTCC-TTCGAGCAGATGAAGAAGATCTATGAATTGACGAAGAAAG  300

Query  572  AAGATAATTCTATGGAGACGACATTGTTAGGTTTGTCTCGGTTGATTGGAAACACAACAA  631
             ||| ||||||| |||||| || | |||||||||||||| |||||||||||||| |||| 
Sbjct  301  TAGAGAATTCTAAGGAGAC-AC-T-GTTAGGTTTGTCTCTGTTGATTGGAAACAGAACAG  357

Query  632  AAGGCAACATTGAAGCGATGGAGAAGATAAAGAGCC  667
            ||| |||||||||||||||| ||| |||||||||||
Sbjct  358  AAGTCAACATTGAAGCGATGAAGACGATAAAGAGCC  393



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24779896050


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5