BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48650.1
Length=1487
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484834 jgi|Araly1|484834|fgenesh2_kg.5__826__AT3G48650.1 2146 0.0
> Ahg484834 jgi|Araly1|484834|fgenesh2_kg.5__826__AT3G48650.1
Length=1450
Score = 2146 bits (1162), Expect = 0.0
Identities = 1392/1494 (93%), Gaps = 51/1494 (3%)
Strand=Plus/Plus
Query 1 ACAACATTCTCCTGTCTTGAGCAAGATTCGTAACCAAGTTCAAGTAATTTCTCTTTCTTC 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ACAACATTCTCCTGTCTTGAGCAAGATTCGTAACCAAGTTCAAGTAATATCTCTTTCTTC 60
Query 61 AACGTCATCTCATTTTGATATTTGTTATATCTTCCTTGTATTTAAGTATTCACAAGGTTA 120
||| ||||||||| |||||||||| | || || |||||||| |||||||||
Sbjct 61 AACCTCATCTCATCTTGATATTTG-T-TA---------TA--TAAGTATT-ACAAGGTTA 106
Query 121 TATTCACGGAATTGAATTAGTCTTAACAAATGGACCCTTGTTAAGCTGCTAATTTTCAGT 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 107 TATTCACGGAATTAAATTAGTCTTAACAAATGGACCCTTGTTAAGCTGCTAATTTCCAGT 166
Query 181 GATATTTACTTACACTTGGTGTATGCAAAATATTCTGAAATCTTTGTCTTTAATTTTCTT 240
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 167 GATATTTACTTAAACTTGGTGTATGCAAAATATTCTGAAATCTTTGCCTTTAATTTTCTT 226
Query 241 CCTTTCCAGGCTAGCTCCAGCATAATATCAATGGCGGCGTTGGTT-GAATTTATCTCTGA 299
|||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||
Sbjct 227 CCTTTCCAGGCTAGCTCCAGTATAATATCAATGGCGGCGTTGGTTGGAA-TTATCTCTGA 285
Query 300 TCGTGTCCTGAGTTCTTGCAAATCCGCTTGCAAAGAAGATCCAAAGCTCAGATCCTATAT 359
||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||
Sbjct 286 TCGTGTCCTGAGTTCTTGCGAATCTGCTTGCGAAGAAGATCCAAAGCTCAGATCCTATAT 345
Query 360 TTCTGCGCTTCGCGAACGAATGGACAAATTGATGGAAATTAAACGGTCACCGGTCGAGGA 419
||||| ||||| |||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 346 TTCTGTGCTTCACGAACGAATGAACAAATTGATGG-----AAACGGTCACCGGTCGAGGA 400
Query 420 AGCAAGACTGGAAAACCATCCAAGGAGGACTCAATCATTAAGATCATCGACTTTT-TAGC 478
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||
Sbjct 401 GGCAAGACTGGAAAACCATCCAAGGAGGACTCAATCATTAAGATCAGCGA-TTTTCTAGC 459
Query 479 TGTCTCAAGCCAAGATGTGGTCAAGATCATTAAAGAAAGCAATTATGATTTCTCGAAGAA 538
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 460 TGTCTCAAGCCAAGATGTGGTCAAGATCATTAAAGAAAGCAAATATGATTTCTCGAAGAA 519
Query 539 CAAAGACA-TAAAGTCTGTGATTGATCTCTATTTTGAGA--GTACCAACAATACTTTGAA 595
|||||| | ||||||||||| |||||||||||||||||| |||||||||| ||||||||
Sbjct 520 CAAAGA-AGTAAAGTCTGTGGTTGATCTCTATTTTGAGATCGTACCAACAAGACTTTGAA 578
Query 596 TTTAGTCAATACCGTCGAGAAATACGTAGCGAAAGCAAAAACCACCACGTTCAACATTTG 655
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 579 TTTATTCAATACCGTCGAGAAATACGTCGCGAAAGCAAAAACCACCACGTTCAACATTCG 638
Query 656 ACTTGCGATCCGACAGTTTGAAAGAGAGTCGAGGGACACGGATTTTGGAGGAAACAATAA 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 ACTTGCGATCCGACAGTTTGAAAGAGAGTCGAGGGACACGGATTTTGGAGGAAACAATAA 698
Query 716 GTACGCGGGAACGTTAGAGAAGCTGAATAAGGTTAAAGCTCTGGGAGATCTTTTTGGTGA 775
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 699 GTACGCGGGAACGTTAGAGAAGCTGAATAAGGTTAAAGCTATGGGAGATCCTTTTGGTGA 758
Query 776 CGAGTTCACGACTCAGTACAAGGCTATCTACGACGAGCATCAGATGCTTTTAAACAAGTC 835
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 759 CGAGTTCACGACTCAGTACAAGGCTATCTTCGACGAGCATCTTATGCTTTTAAACAAGTC 818
Query 836 CCATCACATGCAACTAGAGCATGAGAAGAAGCATAAGAATGACAAGAAATCCAAGAGATT 895
|| | ||||||||||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 819 CCGTGACATGCAACTAGAGCTTGAGAAGAAGCATAAGAATGACAAGAAATCCA-G-GA-- 874
Query 896 GGGGTATAtttttttCGCGGCTGCACTTTTATCTGTTCTCGCCTTATGGATTTATCTTGG 955
| || | ||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 875 G----AT-T------CGCGGCTGCACTTTTCTCTGTTCTCGCCATATGGATTTATCTTGG 923
Query 956 AGCAGTCTCACTTGTGGTAGCAGCTAAGGTTGTGATTGAAGTGGCAACACCGAGTATT-G 1014
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 924 AGCAGTCTCACTTGTGGTAGCAGCTAAGGTTGTGATTGGAGTGGCAACACCGAGTATTAG 983
Query 1015 CACCTTTATGGAAATGGGTCACTGAGATCCTCGAGGACTCTGAGTCTGAGATTGCTTACA 1074
||||||||||||||||||||||||||| ||||||||||||||| | |||||||||
Sbjct 984 -ACCTTTATGGAAATGGGTCACTGAGATGCTCGAGGACTCTGAG----A--TTGCTTACA 1036
Query 1075 AGAAACTTACTGATTTGTTTCGATCGATGGATAAAAATGCAAACCTCAACATCGAATTTG 1134
|||||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||| |
Sbjct 1037 AGAAACTTACTGGTTTGTTTCAATCGATGGATAGAAATGCAAAACTCAACATCGAATCGG 1096
Query 1135 CAAAGACTTTTAAGAGCCTAGTTGAGACGTTATTAACAAGGATCAAGCCGATCTTGGAGA 1194
||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1097 CAAAGACGATAAAGAGCCTAGTTGAGACGTTAATAACAAGGATCAAGCCGATCTTGGAGA 1156
Query 1195 CTGTAGATTATGCTGTGGAGCAAAGAGAAGAGGAGACCGTGAAACTTGTTA-GCAAGAAA 1253
|||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1157 CTGTAGATGATGCTGTGGAGCAAAGAGAAGAGGAGACCGTGAAACTTGTGATGCAAGAAA 1216
Query 1254 TCATTAAGGATATTGAAGGTTTTGCTGACAAAATCGAGGAAGTTGGTACAAATGTGGCTA 1313
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1217 TCATTAAGGATGTTGAAGGTTTTGCTGACAAAATCGAGGAAGTTGGTACAACTGTGGCTA 1276
Query 1314 GGTGTAGCAAAGTGGTCGCTGAGGGAAGAGTTGATGTTCTGGAACACATAAGCAATTTAG 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 GGTGTAGCAAAGTGGTCGCTGAGGGAAGAGTTGATGTTCTGGAACACATAAGCAATTTAG 1336
Query 1374 CTTACTTGAAAGGAGAGTGGTGACTATCAATGTACTATGTGGTAATACTTTTATATTCAT 1433
|||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1337 CTTAATTGAAAGGAAAGTGGTAACTATCAATGTACTATGTGGTAATACTTTTATATTCAT 1396
Query 1434 GTTTGTTGTGTGCAAGACCCATATTTTGAATGTTTGAATAATGAGTTACTTTGT 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 GTTTGTTGTGTGCAAGACCCATATTTTGAATGTTTGAATAATGAGTTACTTTGT 1450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55649847945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5