BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48660.1
Length=270
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323459 jgi|Araly1|323459|fgenesh1_pm.C_scaffold_5001003 357 2e-98
> Ahg323459 jgi|Araly1|323459|fgenesh1_pm.C_scaffold_5001003
Length=255
Score = 357 bits (193), Expect = 2e-98
Identities = 247/270 (91%), Gaps = 15/270 (6%)
Strand=Plus/Plus
Query 1 ATGGCGGATTGGGGACCTGTTGTAGTCGCTGTGATACTGTTCGTGCTTTTGACTCCGGGA 60
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGCGGATTGGGGACCTGTTGTGGTCGCTGTGATATTGTTCGTGCTTTTGACTCCGGGA 60
Query 61 CTTCTCTTTCAGATTCCGGCGAGAGGTCGTGTTGTTGAATTTGGTAATATGCAGACTAGT 120
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 61 CTTCTCTTTCAGATTCCGGCGAGAGGTCGTGTCGTCGAATTTGGTAATATGCAGACTAGT 120
Query 121 GGAGCGTCGATTCTCGTCCACACCATCATTTTCTTCGGTCTTATAACCATCTTCACCATC 180
|| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GGTGCGTCTATTCTCGTCCACACCATCATTTTCTTCGGTCTTATCACCATCTTCACCATC 180
Query 181 GCCATTCGTCTCCATATCTATACCGGCACTAGGCAGTTAGCCTTAGTTTGGTTTATTGGT 240
||||||||||||||||||||||||| | || | || || | |||||||||||
Sbjct 181 GCCATTCGTCTCCATATCTATACCG-C-CT------T-AG--TT--T--GGTTTATTGGT 225
Query 241 ATTCGAGTTCAAATTGGAATTGAGTACTAA 270
|||||| |||||||||||||||||||||||
Sbjct 226 ATTCGAATTCAAATTGGAATTGAGTACTAA 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9432500467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5