BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G48675.1

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937625 jgi|Araly1|937625|scaffold_501816.1                        466    5e-131


> Ahg937625 jgi|Araly1|937625|scaffold_501816.1
Length=402

 Score =  466 bits (252),  Expect = 5e-131
 Identities = 326/362 (90%), Gaps = 4/362 (1%)
 Strand=Plus/Plus

Query  1    ATGGAAAACAACTCAGGAGCTATTCTCTTTGTGATCTTAGCTATGACCATTGTTCTTCAA  60
            ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  23   ATGGAAAACAAATCAGGAGCTATTCTCTTTGTGATCTTAGCTATGGCCATTGTTCTTCAA  82

Query  61   GTGAGGCCAGGGTTCTCTCAAGCACTCCCT-ACGATCCCCGGACTTTTCCCACCGGGT-C  118
            ||||||||||||||  |||||  ||||||| |  ||||| | |||||||||||||||| |
Sbjct  83   GTGAGGCCAGGGTTAGCTCAAATACTCCCTCAT-ATCCCTGAACTTTTCCCACCGGGTTC  141

Query  119  TTCCTATTGATATCATAAAATGTTGGTCATCTCTCTTTAACGTCCAAGGATGTGTACAAG  178
            | |||||||| ||| ||||||||| ||||||||||||| |||||||||||||||| ||||
Sbjct  142  T-CCTATTGACATCGTAAAATGTTCGTCATCTCTCTTTGACGTCCAAGGATGTGTGCAAG  200

Query  179  AAATCTACAAATCGATATTTTCTGGTCAGTTTGCTAGCATTGAAGCCCCATGTTGTAAAA  238
            |||||||||| ||||| ||||||||||| ||||| | |||||||||| ||||||||||||
Sbjct  201  AAATCTACAATTCGATCTTTTCTGGTCAATTTGCAAACATTGAAGCCGCATGTTGTAAAA  260

Query  239  CGTTTTCAGCTATAGATACAAACTGTTGGCCACATATGTTTCCATTGAACCCATTCTTCC  298
              |||| ||| ||||| |||||||||||||| | ||||||||| |||||||| |||||||
Sbjct  261  TATTTTTAGCAATAGACACAAACTGTTGGCCTCGTATGTTTCCGTTGAACCCTTTCTTCC  320

Query  299  CTCCTATTCTCAAGAACAACTGCGAGCGTATTGCTACGACTCCATCATCAACACACAAGT  358
            ||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct  321  CTCCTCTTCTCAAGAACAACTGCGAGCGCATTGCTACTACTCCATCATCAACACACAAGT  380

Query  359  GA  360
            ||
Sbjct  381  GA  382



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12820277904


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5