BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48680.1
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485223 jgi|Araly1|485223|fgenesh2_kg.5__1215__AT3G48680.1 1626 0.0
Ahg496538 jgi|Araly1|496538|fgenesh2_kg.8__2354__AT5G63510.1 743 0.0
> Ahg485223 jgi|Araly1|485223|fgenesh2_kg.5__1215__AT3G48680.1
Length=1109
Score = 1626 bits (880), Expect = 0.0
Identities = 1045/1122 (93%), Gaps = 22/1122 (2%)
Strand=Plus/Plus
Query 1 CTCCCGACGActcctctctgtctcctcctccgggaagctttctgtctctctctctctctc 60
||||||||||||||||| |||||||||||||||||| | |||||||| ||||||
Sbjct 1 CTCCCGACGACTCCTCTGTGTCTCCTCCTCCGGGAA-------G-CTCTCTCTATCTCTC 52
Query 61 tctACACAAGACCTTGAAGAATCCGATTCCATAACAATGGCGACTTCGTTAGCACGAATC 120
|| ||| || |||||||||||||||||||||| |||||||||||||| |||| ||||||
Sbjct 53 TCGACA-AA-TCCTTGAAGAATCCGATTCCATAGCAATGGCGACTTCGCTAGCTCGAATC 110
Query 121 TCTAAAAGAAGCATAACATCGGCTGTTTCATCGAATCTGATTCGGCGTTACTTCGCCGCG 180
| |||||||||| | ||| |||| || | |||||||||||||||||||||||||||||
Sbjct 111 TATAAAAGAAGCGTGACAACGGCAGTGACTTCGAATCTGATTCGGCGTTACTTCGCCGCC 170
Query 181 GAAGCAGTAGCGGTGGCGACGACGGAAACACCTAAACCGAAATCGCAGGTGACGCCGTCG 240
|||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 171 GAAGCAGTTGCGGTGGCGACGACGGAAACACCTAAACCGAAATCGCAAATCACGCCGTCG 230
Query 241 CCGGATCGGGTAAAATGGGACTACAGAGGCCAGAGACAGATAATTCCTCTGGGACAGTGG 300
||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 231 CCGGATCGGGTTAAGTGGGACTACAGAGGCCAAAGACAGATCATTCCTCTGGGACAGTGG 290
Query 301 CTACCGAAGGTAGCTGTAGATGCTTACGTGGCACCTAACGTTGTGTTGGCTGGTCAGGTC 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 291 CTACCGAAGGTAGCTGTAGATGCCTACGTGGCACCTAACGTTGTGTTGGCTGGTCAGGTC 350
Query 361 ACCGTCTGGGACGGCTCGTCTGTATGGAACGGTGCCGTTTTGAGAGGAGATCTTAATAAG 420
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 351 ACCGTCTGGGACGGCTCCTCTGTATGGAACGGGGCCGTTTTGAGAGGAGATCTTAACAAG 410
Query 421 ATCACCGTTGGATTCTGCTCAAATGTCCAGGAACGGTGTGTTGTTCATGCTGCGTGGTCG 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 ATCACTGTTGGATTCTGCTCAAATGTCCAGGAACGGTGTGTTGTTCATGCTGCGTGGTCG 470
Query 481 TCGCCTACAGGATTACCAGCACAAACATTGATCGATAGGTACGTGACAGTTGGTGCATAC 540
|| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 471 TCCCCAACAGGATTGCCAGCACAGACATTGATCGATAGGTACGTGACAGTTGGTGCATAC 530
Query 541 AGTCTTTTAAGATCATGCACTATCGAACCAGAATGCATCATCGGGCAACACTCAATCCTA 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 531 AGTCTTTTAAGATCATGCACTATCGAACCCGAATGCATCATCGGGCAACACTCAATCCTA 590
Query 601 ATGGAAGGTTCACTGGTCGAAACCCGCTCAATCCTAGAAGCTGGTTCTGTTTTACCACCT 660
|||||||||||||||||||| |||||||||||| | ||||||||||||||||| ||||||
Sbjct 591 ATGGAAGGTTCACTGGTCGAGACCCGCTCAATCTTGGAAGCTGGTTCTGTTTTGCCACCT 650
Query 661 GGCAGAAGAATCCCATCTGGTGAACTATGGGGAGGCAATCCAGCAAGGTTTATTCGAACA 720
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 651 GGCAGAAGAATCCCATCTGGTGAACTCTGGGGAGGCAATCCAGCAAGGTTTATTCGAACA 710
Query 721 CTCACCAATGAAGAAACCTTAGAGATCCCGAAACTTGCTGTTGCCATTAACCACCTAAGT 780
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 711 CTCACCAATGAAGAAACCTTAGAGATCCCAAAACTCGCTGTTGCCATTAACCACCTAAGT 770
Query 781 GGAGATTACTTCTCAGAGTTCTTGCCTTACTCAACTATCTATCTAGAGGTTGAGAAGTTC 840
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 771 GGAGATTACTTCTCAGAGTTCTTACCTTACTCAACTATCTATCTAGAGGTTGAGAAGTTC 830
Query 841 AAGAAATCCCTTGGAATCGCCATCTAGAAAGCTT-C-TT--CCAGGTTTCTGGCTACTTC 896
||||||||||||||||||||| |||||||||||| | || |||||||||||||||||||
Sbjct 831 AAGAAATCCCTTGGAATCGCCGTCTAGAAAGCTTTCCTTTTCCAGGTTTCTGGCTACTTC 890
Query 897 CCTCA-TTAAGAAAGCTTCTTCGTTTTC--GGAATTTGATCTGAATAAGTAGCTGCG-GA 952
| ||| ||| ||||||||||||||||| ||||||||||||||||||||||||| | ||
Sbjct 891 CTTCACTTA-GAAAGCTTCTTCGTTTTTTTGGAATTTGATCTGAATAAGTAGCTG-GAGA 948
Query 953 ACAAGAA-AAAGAGCAGAGCTGTGTTTCAAATGTTGTCTTCTCTGTTTGTTTTGTTTAAG 1011
|||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 ACAACAGCAAA-AGCAGAGCTGTGTTTCAAATGTTGTCTTCTCTGTTTGTTTTGTTTAAA 1007
Query 1012 TTCATATCCTTGTGTTCAAACTTTCTATGAAGATGATAATGGTGAAAACTGGAAAGTGTA 1071
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1008 TTCATATCCTTGTGTTCAAACTTTCTATGAAGATGATAATGGTGAAAACTGAAAAGTGAA 1067
Query 1072 AAACTTCTTTCGTCTCCCCTCACAATTGGAAAAGCTAATAAT 1113
|||||||||| || ||| || ||||||||||||| |||||||
Sbjct 1068 AAACTTCTTTTGTGTCCTCTAACAATTGGAAAAGTTAATAAT 1109
> Ahg496538 jgi|Araly1|496538|fgenesh2_kg.8__2354__AT5G63510.1
Length=1034
Score = 743 bits (402), Expect = 0.0
Identities = 623/728 (86%), Gaps = 21/728 (3%)
Strand=Plus/Plus
Query 157 CTGATTCGGCGTTACTTCGCCGCGGAAGCAGTAGCGGTGGCGAC---GACGGAAACACCT 213
||||| || |||| |||||| |||||||| | ||| ||||||| ||| || |||
Sbjct 104 CTGATCCGTCGTTGCTTCGCTGCGGAAGC-G--GCGTTGGCGACGAAGACAGAGGTGCCT 160
Query 214 AAACCGAAATCGCA-GGTGACGCCGTCGCCGGATCGGGTAAAATGGGACTACAGAGGCCA 272
|| ||| ||| | | |||| |||||||||||||||| || ||||||||||||||||||||
Sbjct 161 AAGCCGCAATTG-ACGGTGTCGCCGTCGCCGGATCGTGTGAAATGGGACTACAGAGGCCA 219
Query 273 GA-GACAGATAATTCCTCTGGGACAGTGGCTACCGAAGGTAGCTGTAGATGCTTACGTGG 331
| ||||||| |||||| ||||||||||| ||||||||||||| || |||||||||||||
Sbjct 220 -ACGACAGATCATTCCTTTGGGACAGTGGTTACCGAAGGTAGCCGTTGATGCTTACGTGG 278
Query 332 CACCTAACGTTGTGTTGGCTGGTCAGGTCACCGTCTGGGACGGCTCGTCTGTATGGAACG 391
|||| ||||||||| |||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 279 CACCCAACGTTGTGCTGGCTGGTCAGGTCACAGTCTGGGACGGCTCGTCGGTTTGGAACG 338
Query 392 GTGCCGTTTTGA-GAGGAGATCTTAATAAGATCACCGTTGGATTCTGCTCAAATGTCCAG 450
|||||||||| | | || ||||| || || |||||||| ||||||||||| ||||| |||
Sbjct 339 GTGCCGTTTT-ACGCGGCGATCTCAACAAAATCACCGTCGGATTCTGCTCGAATGTACAG 397
Query 451 GAACGGTGTGTTGTTCATGCTGCGTGGTCGTCGCCTACAGGATTACCAGCACAAAC-ATT 509
|||||||||||||||||||| || |||||||| || ||||||||||||||| | || |||
Sbjct 398 GAACGGTGTGTTGTTCATGCCGCCTGGTCGTCCCCAACAGGATTACCAGCAGAGACAATT 457
Query 510 GATCGATAGGTACGTGACAGTTGGTGCATACAGTCTTTTAAGATCATGCACTATCGAACC 569
||||| |||||||||||||| ||||| ||||||||| |||||||||| || ||||||||
Sbjct 458 -ATCGACAGGTACGTGACAGTGGGTGCCTACAGTCTTCTAAGATCATGTACCATCGAACC 516
Query 570 AGAATGCATCATCGGGCAACACTCAATCCTAATGGAAGGTTCACTGGTCGAAACCCGCTC 629
||| |||||||| || ||||||||||| ||||||||||| || |||||||| ||||| ||
Sbjct 517 AGAGTGCATCATTGGCCAACACTCAATACTAATGGAAGGATCTCTGGTCGAGACCCGGTC 576
Query 630 AATCCTAGAAGCTGGTTCTGTTTTACCACCTGGCAGAAGAATCCCATCTGGTGAACTATG 689
|||||| ||||| ||||| ||| | ||||| || ||||| |||||||| |||||||||||
Sbjct 577 AATCCTGGAAGCAGGTTCGGTTGTGCCACCAGGAAGAAGGATCCCATCAGGTGAACTATG 636
Query 690 GGGAGGCAATCCAGCAAGGTTTATTCGAACACTCACCAATGAAGAAAC-CTTAGAGATCC 748
|||||||||||||||||| || || |||| || |||||||||||||| || ||||||||
Sbjct 637 GGGAGGCAATCCAGCAAGATTCATAAGAACCCTAACCAATGAAGAAACACT-AGAGATCC 695
Query 749 CGAAACTTGCTGTTGCCATTAACCACCTAAGTGGAGATTACTTCTCAGAGTTCTTGCCTT 808
| ||||| ||||| ||||| |||||| |||| |||||||||||||| |||||| | ||||
Sbjct 696 CAAAACTCGCTGTAGCCATCAACCACTTAAGCGGAGATTACTTCTCTGAGTTCCTACCTT 755
Query 809 ACTCAACTATCTATCT-AGAGGTTGAGAAGTTCAAGAAATCCCTTGGAATCGCCA-TCTA 866
||||||| |||| || |||||| |||||||||||||| |||||||| ||||| | | ||
Sbjct 756 ACTCAACCGTCTA-CTTAGAGGTAGAGAAGTTCAAGAAGTCCCTTGGGATCGC-AGTTTA 813
Query 867 GAAAGCTT 874
||| ||||
Sbjct 814 GAA-GCTT 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42316437870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5