BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48690.1
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485224 jgi|Araly1|485224|fgenesh2_kg.5__1216__AT3G48690.1 1694 0.0
> Ahg485224 jgi|Araly1|485224|fgenesh2_kg.5__1216__AT3G48690.1
Length=1130
Score = 1694 bits (917), Expect = 0.0
Identities = 1071/1144 (94%), Gaps = 15/1144 (1%)
Strand=Plus/Plus
Query 29 TCACACACACCAATCTTATCATAACTCACCAACCAATCAACTAACCATGGATTCCGAGAT 88
||||||||||||||||||||||| |||||||| | ||| | |||||||||||||||
Sbjct 1 TCACACACACCAATCTTATCATATCTCACCAA-C---CAA-T---CATGGATTCCGAGAT 52
Query 89 CGCCGTCGACTGCTCTCCATTGCTCAAAATCTACAAGAGTGGCCGCATCGAGCGACTCAT 148
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 53 CGCCGTCGACTGCTCTCCGTTGCTCAAAATCTACAAAAGTGGCCGCATCGAGCGACTCAT 112
Query 149 GGGTGAAGCCACCGTCCCACCTTCTTCCGAACCACAAAACGGAGTCGTTTCCAAGGACGT 208
||||||| |||||||||||||||||||||| ||||||||||| ||||| ||||| || ||
Sbjct 113 GGGTGAAACCACCGTCCCACCTTCTTCCGACCCACAAAACGGCGTCGTCTCCAAAGATGT 172
Query 209 TGTTTATTCTGCCGACAACAACCTATCCGTCCGTATTTACCTCCCGGAGAAAGCCGCCGC 268
||||| ||| ||||||||||||| |||||||| |||||||||||||||||| |||||
Sbjct 173 CGTTTACTCTCCCGACAACAACCTCTCCGTCCGCATTTACCTCCCGGAGAAA---GCCGC 229
Query 269 CGAGACCGACT-CGAAACTCCCTCTCCTCGTTTACTTCCACGGTGGAGGATTCATCATTG 327
||||| || | |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 230 CGAGAACG-GTGAGAAACTCCCTCTCCTCGTTTACTTCCACGGAGGAGGATTCATCATTG 288
Query 328 AGACAGCTTTCTCTCCAACTTACCACACTTTCCTCACGACGTCTGTCTCTGCGTCGAACT 387
|||| ||||||||||| ||||||||||||||||||||| || |||||||||| |||||||
Sbjct 289 AGACCGCTTTCTCTCCGACTTACCACACTTTCCTCACGGCGGCTGTCTCTGCTTCGAACT 348
Query 388 GTGTAGCGGTCTCTGTTGATTACCGTCGTGCACCGGAGCATCCGATCTCCGTCCCGTTCG 447
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
Sbjct 349 GTGTAGCGGTCTCTGTTGATTACCGGCGTACACCGGAGCATCCGATCTCCGTCCCGTTTG 408
Query 448 ATGATTCTTGGACAGCTCTCAAATGGGTATTCACCCATATCACTGGATCTGGTCAAGAAG 507
|||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 409 ATGATTCTTGGACAGCTCTCAAGTGGGTATTTACCCATATCACCGGATCTGGTCAAGAAG 468
Query 508 ATTGGTTAAACAAACATGCTGACTTCAGCAGAGTGTTCCTCTCCGGAGACAGTGCAGGAG 567
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 469 CTTGGTTAAACAAACATGCTGACTTCAGCAAAGTGTTTCTCTCCGGAGACAGTGCAGGAG 528
Query 568 CAAACATCGTGCATCACATGGCGATGAGAGCTGCGAAAGAGAAACTCAGTCCTGGTTTGA 627
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 529 CAAACATCGTGCATCACATGGCGATGAGAGCTGCGAAAGAGAAACTCAGTCCTGATTTGA 588
Query 628 ACGATACAGGAATCTCTGGAATCATCTTGCTTCATCCTTACTTCTGGTCGAAAACACCAA 687
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 589 ACGATACAGGAATCTCTGGAATCATCTTGGTTCATCCTTACTTCTGGTCGAAAACACCAA 648
Query 688 TCGACGAGAAGGATACGAAAGATGAAACGTTGAGGATGAAGATAGAGGCGTTTTGGATGA 747
||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 649 TCGACGAGAAGGACACGAAGGATGAAACCATGAGGATGAAGATAGAGGCGTTTTGGATGA 708
Query 748 TGGCAAGTCCTAATAGCAAAGATGGAACAGATGATCCGTTGCTCAACGTGGTGCAATCAG 807
|||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 709 TGGCTAGTCCCAATAGCAAAGATGGATCAGATGATCCGTTGCTCAACGTGGTGCAATCAG 768
Query 808 AGTCGGTGGATTTGTCTGGGTTGGGTTGTGGTAAGGTTTTGGTAATGGTGGCTGAGAAAG 867
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 AGTCGGTGGATTTGTCAGGGTTGGGTTGTGGTAAGGTTTTGGTAATGGTGGCTGAGAAAG 828
Query 868 ATGCGTTGGTGAGGCAGGGTTGGGGTTACGCGGCTAAGCTTGAGAAGTCTGGTTGGAAAG 927
|||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 829 ATGCGTTGGTGAGGCAAGGTTGGGGTTACGCGGCGAAGCTTGAGAAGTGTGGTTGGAAAG 888
Query 928 GAGAGGTTGAAGTGGTGGAGAGTGAAGGAGAAGATCATGTTTTTCATTTGTTGAAACCTG 987
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAGAGGTTCAAGTGGTGGAGAGTGAAGGAGAAGATCATGTTTTTCATTTGTTGAAACCTG 948
Query 988 AATGTGATAATGCTATTGAAGTCATGCATAAATTCTCAGGGTTTATTAAGGGAGGGAACT 1047
| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 949 ATTGTGATAATGCTATTGAAGCCATGCATAAATTCTCAGGGTTTATTAAGGGAGAGAACT 1008
Query 1048 AGCTTTGTGCTCTCTAGAGATATTGGAATAATTTGGTACTACATATTTTAGTTGCGTCTC 1107
||||||||||||| |||| |||||||||||||||||||||||| | | |||||||||||
Sbjct 1009 AGCTTTGTGCTCTATAGA--TATTGGAATAATTTGGTACTACATGTCTCAGTTGCGTCTC 1066
Query 1108 TCAGTTTCTGTAATGTTTCAGTGATTGGCTTTTCGCCCAAAGCAACACAATAAAAATTGA 1167
|||||||||||||||||||||||||| || ||||| | |||||||||||||||| |||||
Sbjct 1067 TCAGTTTCTGTAATGTTTCAGTGATTAGCATTTCGGCTAAAGCAACACAATAAACATTGA 1126
Query 1168 AGAT 1171
||||
Sbjct 1127 AGAT 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44336952471
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5