BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48710.1
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485225 jgi|Araly1|485225|fgenesh2_kg.5__1217__AT3G48710.1 2230 0.0
Ahg332577 jgi|Araly1|332577|fgenesh1_pm.C_scaffold_8001920 638 0.0
> Ahg485225 jgi|Araly1|485225|fgenesh2_kg.5__1217__AT3G48710.1
Length=1698
Score = 2230 bits (1207), Expect = 0.0
Identities = 1542/1691 (91%), Gaps = 73/1691 (4%)
Strand=Plus/Plus
Query 43 CTTTCTCCTTTATTCACCACTGTTTCAGT-TAGTCGTCGTCTCCACATGGCGACTGAAAC 101
||||||||||||||||||||||||| ||| |||| |||| ||||||||||||||||||||
Sbjct 26 CTTTCTCCTTTATTCACCACTGTTTTAGTCTAGTAGTCGACTCCACATGGCGACTGAAAC 85
Query 102 CCTAGAATTGAAAACACCACAACTAGCAGATACTGTTGCTGTTACCGAGAAGGACACaga 161
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 86 CCTAGAATTGAAAACACCACAATTAGCAGATACTGTTGCTGTTAGCGAGAAGGACACAGA 145
Query 162 gacgaag-aaga---agga--tgaagt-a--gagaa-a-ga-------tga-g--gccat 200
|| |||| ||| || | ||||| | ||||| | || ||| | || |
Sbjct 146 GAAGAAGGAAGCTCCAGTAACTGAAGACACAGAGAAGAAGAAGAAGGATGAAGTAGCGAA 205
Query 201 -g--gagg--a-gaa--ag--g--agaagaaATTGATGGAGAAAAAGTTAAATCGCCGGT 248
| |||| | ||| || | |||||||| ||||||||||| |||||||||||||||
Sbjct 206 AGATGAGGCCATGAAGGAGAAGGGAGAAGAAAATGATGGAGAAAGAGTTAAATCGCCGGT 265
Query 249 GACTCCAGTCAGTGAGAGACCTATAAGGGAGAGGAAGAGGACTGGCCGTTACGTTATAGA 308
|||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||
Sbjct 266 GACTCCAGTCAGTGAGAGGCCTATAAGGGAGAGAAAGAGGACTGGCCGTTACATTATAGA 325
Query 309 TACTCCTCCTCGATCCTCCGGGAACAAGCCTCTGTCAATT-ACACAGGGTCGTGGAACAC 367
|||||| ||| |||||| | |||||||||| |||||||| | ||||||||||||||||
Sbjct 326 CACTCCTTCTCCATCCTCTGTGAACAAGCCTGTGTCAATTGAG-CAGGGTCGTGGAACAC 384
Query 368 GGCTTAAGGAAATTCCAAATGTTGCTTATAAACTGTCCAAGAGAAAACCTGATGACAACC 427
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 385 GGCTTAGGGAAATTCCAAATGTTGCTTATAAACTGTCCAAGAGAAAACCTGACGACAACC 444
Query 428 TCTTCTTACTTCACACCATTCTTTACGGCAAAAAAGCAAAGGCACAGATGCTAAAGAAAA 487
|||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||
Sbjct 445 TCTTCTTACTTCACACCATTCTTTACGGCAAAAAGGGAAAGGCACAGATGCTGAAGAAAA 504
Query 488 ACATTGGTCAGTTTTCGGGTTTTGTATGGTCAGAGCAAGAGGAGGAGAAGCAAAGAGCAA 547
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 ACATTGGCCAGTTTTCGGGTTTTGTATGGTCAGAGCAAGAGGAGGAGAAGCAAAGAGCAA 564
Query 548 AAGCTAAAGAGAAGCTTGATAAATGTATCAAAGAAAAGTTGATTGATTTCTGTGATGTGC 607
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 565 GAGCTAAGGAGAAGCTTGAGAAATGTATCAAAGAAAAGTTGATTGATTTCTGTGATGTGC 624
Query 608 TTGATATACCAGTAAACAAAAGTACTGTGAAAAAGGAAGAACTGGCTGTAAGAGTGCTTG 667
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 TTGATATACCAATAAACAAAAGTACTGTGAAAAAGGAAGAACTGGCTGTAAGAGTGCTTG 684
Query 668 AATTTTTGGTATGTCCCAAAGCAACAAGGGATATTCTACTTGCTGATAGTGAAAAGGAAA 727
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 AATTTTTGGTATGCCCCAAAGCAACAAGGGATATTCTACTTGCTGATAGTGAAAAGGAAA 744
Query 728 CTAAAAAGCGCAAGAAGAGCACATCGAAGAACGTGACCTCTGGAGAATCATCACATGTCC 787
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 745 CTAAAAAGCGCAAGAAGAGCACACCGAAGAACGTGACCTCTGGAGAATCATCAGATCTCC 804
Query 788 CAGCTAAGAGGAGAAGGCAGGCGAAGAA------A------CAAGAACAGCCAACTGAGA 835
| || ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 805 CTGCCAAGAGGAGAAGGCAGGCGAAGAATTCTGGAAAGAAACAAGAACAGCCAACTGAGA 864
Query 836 CTGAAGGAAATGGTGAGTCTGATGTTGGTTCCGAAGGAACAAATGACTCTAATGGAGAAG 895
|||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 865 CTGAAGGAAACGGTGAGGCTGATGTTGGTTCCGAAGGAACAAATGACTCTCATGGAGAAG 924
Query 896 ATGATGTAGCTCCAGAGGAAGAAAACAACAAAAGTGAAGATACTGAAACTGAAGATGAGA 955
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 925 ATGATGTAGCTCCAGAGGAAGAAAACAACAAAAATGAAGATACCGAAACTGAAGATGAGA 984
Query 956 AAGATAAAGCCAAGGAGAAGACTAAGTCAACCGATAAGAAACGCTTGTCAAAAAGGACTA 1015
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 985 AAGATAAAGCCAAGGAGAAGACTAAGTCAACCAATAAGAAAAGCTTGTCAAAAAGGACTA 1044
Query 1016 AGAAGGAGAAACCAGCAGCTGAAGAGGAGAAATCTATTAAAGGTTCTGCAAAATCTAGTC 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 AGAAGGAGAAACCAGCAGCTGAAGAGGAGAAATCTATTAAAGGTTCTGCAAAATCTAGTC 1104
Query 1076 GAAAGTCCTTCAGACAAGTCGATAAATCAACTACATCATCAAGCAAGAAGCAAAAGGTTG 1135
||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1105 GAAAGTCCTCCAGACAAATCGATAAATCAACTTCATCATCAAGCAAGAAGCAAAAGGTTG 1164
Query 1136 ATAAAGACGATTCCTCTAAAGAGAAAGGCAAGACACAGACAAGTAAACCACAGGCAAAAG 1195
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1165 ATAAAGACGATTCCTCTAAAGAGAAAGGCAAGACACAGACAAGTAAACCACAGGCAAAGG 1224
Query 1196 GATCCAAAGATCAAGGACAATCCCGAAAGAAAGGTAAAAAAGAACCCACAAGAAAAGAAC 1255
||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1225 GATCCAAAGATCAAGGAAAATCCCGTAAGAAAGGTAAAAAAGAACCCACAAAAAAAGAAC 1284
Query 1256 TGCATGTAGTGGTGACCAAAATTCTGAAGGAAGTAGACTTCAATACGGCAACTCTATCTG 1315
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 TGCATGTGGTGGTGGCCAAAATTCTGAAGGAAGTAGACTTCAATACGGCAACTCTATCTG 1344
Query 1316 ATATTCTACGGAAGCTTGGGAGCCATTTTGGAATTGATCTTATGCATAGAAAAGCAGAGG 1375
||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1345 ATATTTTGCGGAAGCTTGGGAGCCATTTTGGAGTTGATCTTATGCATAGAAAAGCAGAGG 1404
Query 1376 TGAAGGATATCATTACAGATGCCATTAACGAAATGAGTGATGATGATGATGAGAAAGAGG 1435
||||||||||||||||||||||||||||||||||||||||||||||||| || | | ||
Sbjct 1405 TGAAGGATATCATTACAGATGCCATTAACGAAATGAGTGATGATGATGA-GA-ATGG-GG 1461
Query 1436 AAGACACAGAGGATGAAGGTGAGAAAGAGGGAAAGGACTAGTTTTGTCTTTCTTCTCTTT 1495
|| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1462 AAAACACAGAGGATGAAGGTGAGAAAGAGAGAAAGGACTAGTTTTATCTTTCTTCTCTTT 1521
Query 1496 CCTACAATAAGAAAAAGAAAACATAACC-GAAGAGACGGTTTAACTTAACCTTCCATGTG 1554
|| |||||||||||| | ||||||| ||| |||||||||||||||||||| |||||
Sbjct 1522 TCTGCAATAAGAAAAA-A---CATAACCCGAACAGACGGTTTAACTTAACCTTG-ATGTG 1576
Query 1555 TGAATC-A-T-A--GGATTGTTTGTATGTTTGGTGTAATGTGTAATCTGTTAGGCTCATG 1609
|||||| | | | |||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1577 TGAATCGAATCATAGGATTGTTTGTATGTT-GGTGTATTGTGTAATCTGTTAGGCTCATC 1635
Query 1610 TAGTATCAGGTAATGTGGTTGGATACTTTCTGGATTAGAAT-TA-ATTTGAGATGTATTT 1667
||||||||||| | || ||| || ||| |||| | | | ||||||| |||||||
Sbjct 1636 TAGTATCAGGTTA-GTC-TTG--TA-TTT--GGAT-ACTTTGTGGATTTGAGCTGTATTT 1687
Query 1668 GTAAGGACTTG 1678
|||||||||||
Sbjct 1688 GTAAGGACTTG 1698
> Ahg332577 jgi|Araly1|332577|fgenesh1_pm.C_scaffold_8001920
Length=1620
Score = 638 bits (345), Expect = 0.0
Identities = 901/1156 (78%), Gaps = 91/1156 (8%)
Strand=Plus/Plus
Query 343 TCAATT-ACACAGGGTCGTGGAACACGGCT-TAAG-GAAATTCCAAATGTTGCTTATAAA 399
|||||| | | ||||||||||||||| || | || |||||||||||||| ||| |||||
Sbjct 376 TCAATTGA-AAAGGGTCGTGGAACAC--CTCTCAGAGAAATTCCAAATGTGGCTCATAAA 432
Query 400 CTGTCCAAGAGAAAACCTGATGACAACCTCTTCTTACTTCACACCATTCTTTACGGCAAA 459
|| |||||||| ||| ||||||||||||| | ||||| |||||||||||||| || ||
Sbjct 433 CTATCCAAGAGGAAAGCTGATGACAACCTGATGTTACTACACACCATTCTTTATGGGAAG 492
Query 460 AAAGCAAAGGCACAGATGCTAAAGAAAAACATTGGTCAGTTTTCGGGTTTTGTATGGTCA 519
|||||||||||||||||| | |||| |||||||||||| ||||| || |||| |||||||
Sbjct 493 AAAGCAAAGGCACAGATGGTTAAGAGAAACATTGGTCAATTTTCTGGCTTTGCATGGTCA 552
Query 520 GAGCAA-GAGGAGGAGAAGCAAAGAGCAAAAGC-T-AAAGAGAAGCTTGATAAATGTATC 576
||| || |||||||||||||| ||||| | || | ||||||||| |||| ||||| ||
Sbjct 553 GAG-AATGAGGAGGAGAAGCAGAGAGC--ACGCATAAAAGAGAAGATTGACAAATGCATA 609
Query 577 AAAGAAAAGTTGATTGATTTCTGTGATGTGCTTGATATACC-AGTAAACAAAAGT-ACTG 634
|||||||| ||||||| ||| |||||||||||||||||||| | ||| | |||| ||
Sbjct 610 AAAGAAAAATTGATTGTTTTTTGTGATGTGCTTGATATACCTA-TAAGTAGAAGTAAC-A 667
Query 635 TGAAAAAGGAAGAACTGGCTGT-AAGAGTGCTTGAATTTTTGGTATGTCCCAAAGCAACA 693
||||||| |||||||| ||||| || ||||||||||||||||| || |||||| | ||||
Sbjct 668 TGAAAAAAGAAGAACTTGCTGTCAA-AGTGCTTGAATTTTTGGAATCTCCCAAGGAAACA 726
Query 694 AGGGATATTCTACTTGCTGAT-AGTGAAAAGGAAACTAAAAAGCGCAAGAAGAGCACATC 752
|| ||| || || |||||||| | |||||| | | ||||||||| ||||| ||| |
Sbjct 727 AGAGATGTTGTAATTGCTGATCA-AGAAAAGCAGGCGAAAAAGCGC---AAGAGTACA-C 781
Query 753 GAAGAA-CGTGACCTCTGGAGAATCATC--ACATGTCCCAGCTAAGAGGAGAAGGCAGGC 809
||||| | || ||||||||||| || ||| |||||| ||||||| |||||| |
Sbjct 782 AAAGAAGGGGGAAATCTGGAGAATCTTCGGACA--CCCCAGCCAAGAGGAAAAGGCAAAC 839
Query 810 GAAGAAACA-AGAACAGCCAACTGAGACTG-A-A-GGAAATGG-TG-AGTCTGATGTTGG 863
|| ||| | ||| |||||| |||| |||| | | || || || || || |||| ||
Sbjct 840 -AAAAAAGAGAGATCAGCCATCTGACACTGAAGAGGGCAA-GGATGAAG-GAGATGCTGA 896
Query 864 TTCCGAAGGAACAAATGACT-CTAATGGAGAAGATGATGTAGCTCCAGAGGAAGAAAACA 922
||| |||||||| ||||| | || ||| ||||||||| | | |||||||||||||||
Sbjct 897 TTCTGAAGGAACTAATGA-TCCTCATGAAGAAGATGAGGCAACTCCAGAGGAAGAAAGTG 955
Query 923 ACAAAAGTGAAGATACTGAAACTGAAGATGAGAAAGATAAAGCCAAGG-AGAAGACTAAG 981
|| | |||| | ||||| ||||||||||| ||||| ||||| ||| | ||| ||
Sbjct 956 AC--CA-TGAAAAGACTGACACTGAAGATGAAAAAGACAAAGCTGAGGTTG-AGA--AA- 1008
Query 982 TCAACCGATAAGAAACGCTTGTC-AAAAAGGACT-AAGAAGGAGAAAC-CA--G--C--A 1032
|| || |||||||| | | || ||||| |||| || ||||| | | || | | |
Sbjct 1009 CCATCCAATAAGAAAAGATCATCGAAAAA-GACTGTAG-AGGAG-AGCTCAGGGTCCAAA 1065
Query 1033 GCTGAA-GAGGAG-AA--ATCTATTAAAGGTTCTGCAAAATCTAGTCG-AAAGTCCTTCA 1087
| | || || || || ||| |||||||||||||||||| || | ||||| || ||
Sbjct 1066 GGT-AAGGATAAGCAAGCTTCTGCCAAAGGTTCTGCAAAATCTGGT-GAAAAGTTCTCCA 1123
Query 1088 GACAAGTCGATAAATCAACTACATCATCAAGC-AAGAAGCAAAAGGTTGATAAAGACGAT 1146
|||| | | ||| |||||| |||| | ||| ||||||||||| |||||| | | |||
Sbjct 1124 AACAAATTGCTAAGTCAACTTCATC-CCCAGCTAAGAAGCAAAAAGTTGATCATGTCGAG 1182
Query 1147 TCCTCTAAAGAGAAAGGCAAGACACAGACAAGTAAACCACAGGCAAAAGG-ATCCAAAGA 1205
|| |||||||||||| |||||| |||| | ||||| |||||||| |||| ||| |||||
Sbjct 1183 TCTTCTAAAGAGAAAAGCAAGAAACAGCCGAGTAAGCCACAGGC-TAAGGCATCTAAAGA 1241
Query 1206 TCAAGG-ACAATCC-CGAAAGAAAGGTAAA---AAAG-A-A-CCCACAAGAAAAGA-ACT 1256
|||| | || || | |||||||| ||| |||| | | ||||| ||| |||| | |
Sbjct 1242 GAAAGGTA-AAGCCAC-TAAGAAAGGCAAAGCCAAAGCAGAGCCCACCAGAGAAGAGA-T 1298
Query 1257 GCATGTAGTGGTGACCAAAATTCTGAAGGAAGTAGACTTCAATACGGCAACTCTATCTGA 1316
|| || ||||||| |||||||||||||||||||||||||||||||||| || || || ||
Sbjct 1299 GCTTGAAGTGGTGTCCAAAATTCTGAAGGAAGTAGACTTCAATACGGCTACACTGTCAGA 1358
Query 1317 TATTCTACGGAAGCTTGG-GAGCCATTTTGGAATTGATCT-TATGCATAGAAAAGCAGAG 1374
|||||| | |||||| | || ||||||||| | || || | |||||||||| |||||
Sbjct 1359 TATTCTGCAGAAGCTAAGCGA-CCATTTTGGTGTCGAACTGTC-GCATAGAAAACCAGAG 1416
Query 1375 GTGAAGGATATCATTACAGATGCCATTAACGAAATGAGTGATGATGATGATGA-GAAAGA 1433
||||||||| | || ||||||||||| || | ||||| |||||| || ||||| ||| ||
Sbjct 1417 GTGAAGGATGTTATCACAGATGCCATAAATGCAATGACTGATGACGAAGATGATGAA-GA 1475
Query 1434 GGAAGAC-ACAGAGGA 1448
|||||| | ||||||
Sbjct 1476 AGAAGACGA-AGAGGA 1490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64029701845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5