BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48720.1
Length=1665
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485226 jgi|Araly1|485226|fgenesh2_kg.5__1218__AT3G48720.1 2331 0.0
Ahg496545 jgi|Araly1|496545|fgenesh2_kg.8__2361__AT5G63560.1 721 0.0
> Ahg485226 jgi|Araly1|485226|fgenesh2_kg.5__1218__AT3G48720.1
Length=1615
Score = 2331 bits (1262), Expect = 0.0
Identities = 1524/1645 (93%), Gaps = 40/1645 (2%)
Strand=Plus/Plus
Query 31 TACCTTATCTCTCCAGCTATACACTTGCTACTCAAGATACCGCTAACCCTAATCTCTACT 90
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1 TACCTTATCTCTCCAGCTATACACTTGCTACTCAAGATACCACTAACCCTAATCTCCACT 60
Query 91 AGACCCCC-----TTAGGACTTAAAACCCTATATATCAAGGTCTACTCTCTGTTTTCTCG 145
|||||||| |||| | |||||||||||||||||||| || | |||||| ||||||
Sbjct 61 AGACCCCCTTTAATTAGAAGTTAAAACCCTATATATCAAGATCGATTCTCTG-TTTCTCA 119
Query 146 CTTTCTTTATTCGAGCCATTCCATACGTTTTTCGATTTCTTTCATTGAAAACCA-TTGAA 204
||||||| |||| |||||||||| | ||||||||||||||||||||||||| || |||||
Sbjct 120 CTTTCTTCATTCCAGCCATTCCACAAGTTTTTCGATTTCTTTCATTGAAAA-CACTTGAA 178
Query 205 ATGGTCGCCTCATCTGAGTTCATCGTCACAAGGAAAAACCCTGAACTCATCCCTCCCGTG 264
||||| ||||||| |||| || |||||||||||||||||||||||||||||||||| |||
Sbjct 179 ATGGTGGCCTCATTTGAGATCTTCGTCACAAGGAAAAACCCTGAACTCATCCCTCCTGTG 238
Query 265 TCCGAAACTCCGAATGGTCATTACTATCTCTCGAATCTCGATCAAAACATCGCCATCATC 324
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TCCGAAACTCCAAAGGGTCATTACTATCTCTCGAATCTCGATCAAAACATCGCCATCATC 298
Query 325 GTGAAAACATTATATTACTACAAATCGGAGTCAAGAACCAACCAAGAATCCTACAATGTG 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GTGAAAACATTATATTACTACAAATCGGAGTCAAGAACCAACCAAGAATCCTACAATGTG 358
Query 385 ATCAAGAAATCTCTCTCAGAGGTTCTTGTTCATTACTACCCTGTCGCCGGAAGGCTGACG 444
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ATAAAGAAATCTCTCTCTGAGGTTCTTGTTCATTACTACCCTGTCGCCGGAAGGCTGACG 418
Query 445 ATCAGTCCGGAAGGGAAGATCGCCGTCAATTGCACCGGAGAAGGTGTAGTGGTTGTGGAA 504
|||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 419 ATCAGTCCGGAAGGAAAGATCGCCGTGAATTGCACAGGAGAAGGAGTAGTGGTTGTGGAA 478
Query 505 GCTGAGGCTAACTGTGGGATAGATACGATCAAAGAGGCCATCTCAGAGAATAGAATGGAG 564
||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||
Sbjct 479 GCTGAGGCTAACTGTGGGATAGAGACGATCAAAGAGGCCATCTCTGTGAATAGAATGGAG 538
Query 565 ACGCTCGAGAAACTTGTTTACGACGTTCCAGGTGCCCGGAATATTCTTGAGATTCCACCG 624
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 539 ACGCTCGAGAAACTTGTTTACGACGTTCCAGGTGCCCGGAATATTCTTGAGATTCCGCCG 598
Query 625 GTAGTAGTTCAGGTGACAAATTTCAAATGTGGGGGTTTTGTCCTAGGACTAGGCATGAGC 684
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GTAGTAGCTCAGGTGACAAATTTCAAATGTGGGGGTTTTGTCCTAGGACTAGGCATGAGC 658
Query 685 CACAACATGTTCGATGGAGTCGCCGCTGCGGAGTTCCTCAACTCGTGGTGCGAGATGGCC 744
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CACAACATGTTCGATGGAGTCGCCGCTGCGGAGTTCCTCAACTCGTGGTGCGAGATGGCT 718
Query 745 AAGGGTCTTCCTTTATCCGTCCCACCATTCTTGGACCGTACGATTCTCCGGTCACGAAAC 804
||||| ||||||||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct 719 AAGGGCCTTCCTTTATCCGTCCCGCCTTTCTTGGACCGTACGATTCTCCGGCCACGAAAC 778
Query 805 CCTCCCAAAATCGAGTTCCCACACAATGAATTCGACGAAATTGAAGATATTTCCGACACC 864
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 779 CCTCCCAAAATCGAGTTCCCACACAACGAATTCGACGAAATTGAAGACATCTCCGACACC 838
Query 865 GGAAAAATCTACGATGAAGAAAAACTCATCTACAAATCATTTCTTTTCGAACCCGAAAAG 924
||||| |||||||||||||||||||| ||||||||||||| || |||||||||||||||
Sbjct 839 CGAAAACTCTACGATGAAGAAAAACTCGTCTACAAATCATTCCTCTTCGAACCCGAAAAG 898
Query 925 CTTGAGAAGCTCAAGATCATGGC-GATTGAAGAAAATAACAATAATAAGGTATCAACATT 983
|||||||||||||||| |||||| | ||||||||| ||| |||| |||||||||||||||
Sbjct 899 CTTGAGAAGCTCAAGACCATGGCAG-TTGAAGAAAGTAATAATAGTAAGGTATCAACATT 957
Query 984 TCAAGCCTTAACCGGGTTTCTTTGGAAATCAAGATGCGAAGCTCTACGGTTTAAACCGGA 1043
|||||||||||||||||||||||||||||||||||| || |||||||||| |||||| ||
Sbjct 958 TCAAGCCTTAACCGGGTTTCTTTGGAAATCAAGATGTGAGGCTCTACGGTATAAACCAGA 1017
Query 1044 CCAACGGGTTAAGCTTCTGTTTGCGGCGGATGGACGGTCAAGATTCATCCCACGTCTCCC 1103
|||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 1018 CCAACGGGTTAAACTTCTGTTCGCGGCTGATGGACGGTCTAGATTCATCCCACGTCTCCC 1077
Query 1104 GCAAGGATATTGCGGGAACGGGATTGTGTTAACCGGTTTGGTGACATCATCGGGAGAATT 1163
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1078 ACAAGGATATTGCGGGAACGGGATTGTGTTAACCGGTTTGGTGACATCATCAGGAGAATT 1137
Query 1164 AGTTGGGAACCCTCTTTCTCACTCGGTGGGTTTGGTCAAGAGACTGGTGGAGCTGGTTAC 1223
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1138 AGTTGGGAACCCTCTTTCTCACTCGGTGGGTTTGGTCAAGAGACTGGTCGAGTTGGTTAC 1197
Query 1224 GGACGGCTTCATGCGGTCGGCTATGGACTACTTCGAGGTGAACCGGACACGGCCGAGTAT 1283
||||| |||||| ||||||||||||| ||| |||||||||||||||| |||||||||||
Sbjct 1198 AGACGGTTTCATGAGGTCGGCTATGGATTACGTCGAGGTGAACCGGACCCGGCCGAGTAT 1257
Query 1284 GAACGCGACACTTTTGATTACATCCTGGTCAAAATTGACATTGCATAAACTGGATTTCGG 1343
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GAATGCGACGCTTTTGATTACATCCTGGTCAAAATTGACATTGCATAAACTGGATTTCGG 1317
Query 1344 TTGGGGAGAACCGGTTTTCTCTGGACCGGTTGGTTTACCAGGGAGGGAAGTGATCTTGTT 1403
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1318 TTGGGGAGAACCGGTTTTCTCTGGACCGGTTGGTTTACCAGGGAGGGAAGTGATTTTGTT 1377
Query 1404 CTTACCAAGTGGTGATGATATGAAGAGTATCAATGTGTTTCTTGGCCTTCCTACTTCAGC 1463
|||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1378 CTTACCAAGTGGAAATGACATGAAGAGTATCAATGTGTTTCTTGGCCTTCCTGCTTCAGC 1437
Query 1464 TATGGAAGTGTTTGAAGAGCTTATGAAGA---TCTGAAAAAGAACATACATTTTCATAAT 1520
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1438 TATGGAAGTGTTTGAAGAGCTTATGAAGAAGATCTGAAAAAGAACATACATTTTCATAAT 1497
Query 1521 CAAATTATGATATATTCTACCAAATTATAAGCAAAGGAAAATTATAATCTAGTCATTATT 1580
||||||||||| |||| | | |||| | | | | || | | | |||
Sbjct 1498 CAAATTATGATTTATT-T------T-ATAATC---------T-A-A-TC-A-T--T-ATT 1532
Query 1581 TATACATGTTATATTTGAATTCACGTTTGTATCCATTACAAAAATTTATGTAATTCGCAG 1640
||||||||| | ||||||||| |||||||||| |||||||||| ||||||||||||||
Sbjct 1533 TATACATGTAAG-TTTGAATTCTCGTTTGTATCAATTACAAAAAATTATGTAATTCGCAT 1591
Query 1641 AAAATATATATATGTCAAATTAAGT 1665
|||| |||||||||||||| |||||
Sbjct 1592 AAAA-ATATATATGTCAAAGTAAGT 1615
> Ahg496545 jgi|Araly1|496545|fgenesh2_kg.8__2361__AT5G63560.1
Length=1494
Score = 721 bits (390), Expect = 0.0
Identities = 1028/1328 (77%), Gaps = 76/1328 (6%)
Strand=Plus/Plus
Query 203 AAATGGTCGCCTCA-TCTGAGTTCATCGTCACAAGGAAAA-ACCCTGAACTCATCCCTCC 260
|||||| || |||| || ||| ||||||| || ||||| | |||| ||| || ||||
Sbjct 35 AAATGGCCGACTCATTC-GAGCTCATCGTAAC-CCGAAAAGAACCTGTTCTCGTCTCTCC 92
Query 261 CGTGTCCGAAACTCCGAATGGTCAT-TACTATCTCTCGAATCTCGATCAAAACATCGCCA 319
| |||| |||||| || |||| | | ||||| || ||||||||||||||||||||||
Sbjct 93 AGCCTCCGGAACTCCAAAAGGTC-TCCATTATCTATCAAATCTCGATCAAAACATCGCCA 151
Query 320 TCATCGTGAAAACATTATATTACTACAAATCGGAGTCAAGAACCAACCAAGAATCCTAC- 378
||||||| |||||||| || |||| |||||| | |||||| ||||| | |||||||
Sbjct 152 TCATCGTCAAAACATTCTACTACTTCAAATCAAACTCAAGATCCAACGAGGAATCCTGTG 211
Query 379 AATGTGATCAAGAAATCTCTCTCAGAGGTTCTTGTTCATTACTACCCTG-TCGCCGGAAG 437
|| || |||||||| || ||||| |||||||||||||| ||||| |||| | ||||| ||
Sbjct 212 AA-GTCATCAAGAAGTCACTCTCCGAGGTTCTTGTTCACTACTATCCTGCT-GCCGGGAG 269
Query 438 GCTGACGATCAGTCCGGAAGGGAAGATCGCCGTCAATTGCACCGGAGAAGGTGTAGTGGT 497
|| |||||||| || ||||| ||||| || || |||||||||||||||| || || ||
Sbjct 270 ACTCACGATCAGCCCCGAAGGCAAGATTGCTGTGGATTGCACCGGAGAAGGAGTTGTCGT 329
Query 498 TGTGGAAGCTGAGGCTAACTGTGGGATAGATACGATCAAAGA-GGCCATCTCAGAGAAT- 555
|||||||||||||| || ||||||||||| | |||||| || ||| || || |||| |
Sbjct 330 GGTGGAAGCTGAGGCCAATTGTGGGATAGAGAAGATCAA-GAAGGCTATATCGGAGATTG 388
Query 556 AG-AAT-GGAGACGCTCGAGAAA-CTTGTTTACGACGTTCCAGGTGCCCGGAATATTCTT 612
| || |||||| || || ||| || |||| |||||||| ||||| ||||||||||||
Sbjct 389 ATCAACCGGAGACTCTTGA-AAAGCTGGTTTTTGACGTTCCCGGTGCTCGGAATATTCTT 447
Query 613 GAGATTCCACCGGTAGTAGTTCAGGTGACAAATTTCAAATGTGGGGGTTTTGTCCTAGGA 672
|||||||| || || || |||||||||||||||||||||||||| || || || ||||||
Sbjct 448 GAGATTCCGCCAGTGGTTGTTCAGGTGACAAATTTCAAATGTGGAGGATTCGTGCTAGGA 507
Query 673 CTAGGCATGAGCCACAACATGTTCGATGG-AGTCGCCGCTGCGGAGTTCCTCAACTCGTG 731
|||||||||| |||||| ||||||||||| | | || ||| ||||||||||||||| ||
Sbjct 508 CTAGGCATGAACCACAATATGTTCGATGGTATT-GCAGCTATGGAGTTCCTCAACTCTTG 566
Query 732 GTGC-GAGATGGC-CAAGGGTCTTCCTTTATCCGTCCCACCATTCTTGGACCGTACGA-T 788
| || |||| ||| | || || ||| | ||| | ||||| ||||||||||| || | |
Sbjct 567 G-GCCGAGACGGCTCGTGGC-CTCCCTCTCTCCCTTCCACCTTTCTTGGACCGCAC-ACT 623
Query 789 TCTCCGGTCACGAAACCCTCCCAAAATCGAGTTCCCACACAATGAATTCGACGAAATTGA 848
||| || |||||| ||| || || ||||| ||||||||||| || || || || | ||
Sbjct 624 TCTACGACCACGAATCCCACCGAAGATCGAATTCCCACACAACGAGTTTGAGGACCTCGA 683
Query 849 AGATATTTCCGACACCGGAAAAATCTACGATGAAGAAAAACTCATCTACAAATCATTTCT 908
||| || |||| |||||||||| ||||| || || |||||| |||||||||| || ||
Sbjct 684 AGACATCTCCGGCACCGGAAAACTCTACTCCGACGAGAAACTCGTCTACAAATCCTTCCT 743
Query 909 TTTCGAACCCGAAAAGCTTGAGAAGCTCAAGATCATGGCGATTGAAGAAAATAACAATAA 968
|||| ||||||||| || |||| ||||||||||||||| | || || ||| |
Sbjct 744 CTTCGGACCCGAAAAACTCGAGAGGCTCAAGATCATGGC-A--GA-GA------CAA-AG 792
Query 969 TAAGGTATCAACATTTCAAGCCTTAACCGGGTTTCTTTGGAAATCAAGATG-CGAAGCTC 1027
| | | || |||||| || |||| || ||||| |||| | | | || | |||| |
Sbjct 793 TCC---A-CGACTTTTCAAACCCTAACTGGATTTCTATGGAGAGCTCGTTGTC-AAGC-C 846
Query 1028 T-ACGGTTTAAACCGGACCAACGGGTTAAGCTTCTGTTTGCGGCGGATGGACGGTCAAGA 1086
| | || ||||||| || |||||| | || ||||| ||||| || ||||||||||| |||
Sbjct 847 TTAGGGCTTAAACCAGATCAACGGATCAAACTTCTCTTTGCTGCAGATGGACGGTCGAGA 906
Query 1087 TTCATCCCACGT--CTCCCGCAAGGATATTGCGGGAACGGGATTGTGTTAACCGGTTTG- 1143
|| |||| || || || ||||||||| ||| |||||||||||||| || || |
Sbjct 907 TTT-TCCC-CGGAACTTCCTAAAGGATATTCCGGTAACGGGATTGTGTTCACTTATT-GC 963
Query 1144 GTGACATCATCGGGAGAATT-AGTTGGGAACCCTCTTTCTCACTCGGTGGGTTTGGTCAA 1202
|| ||| | | || ||| | | || |||||||||||||| |||||||||||||||||
Sbjct 964 GTTACAACGGCTGGTGAAGTGACTTTA-AACCCTCTTTCTCATTCGGTGGGTTTGGTCAA 1022
Query 1203 GAGA-CTGGTGGAGCTGGTTA-CGGACGGCTTCATGCGGTCGGCTATGGACTACTTCGAG 1260
||| | | || | |||| | || |||| |||||| |||| || || || ||||| |||
Sbjct 1023 AAGAGCCGTTGAAA-TGGTCAACG-ACGGTTTCATGAGGTCAGCGATTGATTACTTTGAG 1080
Query 1261 GTGAAC-CG-GAC-ACGGCCGAGTATGAACG-CGACACTTTTGATTACATCCTGGTCAAA 1316
|||| | || | | | |||||||| | |||| | |||||| |||| || || ||| ||||
Sbjct 1081 GTGA-CTCGAG-CTA-GGCCGAGTCT-AACGGCAACACTTCTGATCACGTCGTGGGCAAA 1136
Query 1317 ATTGACATTGCATA--AACTGGATTTCGGTTGGGGAGAACCGGTTTTCTCTGGACCGGTT 1374
| || | || |||| || ||||||||||||||| ||||||||| | |||||||||||
Sbjct 1137 ACTGTCGTTTCATACTAA--GGATTTCGGTTGGGGTGAACCGGTTGTGTCTGGACCGGTC 1194
Query 1375 GGTTTACCAGGGAGGGAAGTGAT-CTTGTT-CTTACCAAGTGGT-GATGATATGAAGAGT 1431
|||||||| | || ||||||||| || ||| || ||| |||| | ||| | |||||||
Sbjct 1195 GGTTTACCTGAGAAGGAAGTGATTCT-GTTTCTG-CCATGTGGCAG-TGACACGAAGAGT 1251
Query 1432 ATCAATGTGTTTCTTGGCCTTCCTA-CTTCAGCTATGGAAGTGTTTGAAGAGCTTATGAA 1490
||||||||| | ||||| |||||| || | |||||| ||||||| ||| ||||||| |
Sbjct 1252 ATCAATGTGCTGCTTGGACTTCCTGGCT-CGGCTATGAAAGTGTTCCAAGGGCTTATGGA 1310
Query 1491 GATCTGAA 1498
|| ||||
Sbjct 1311 TATATGAA 1318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62429911555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5