BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48730.1
Length=1654
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937638 jgi|Araly1|937638|scaffold_501829.1 2357 0.0
Ahg496546 jgi|Araly1|496546|fgenesh2_kg.8__2362__AT5G63570.1 1295 0.0
> Ahg937638 jgi|Araly1|937638|scaffold_501829.1
Length=1473
Score = 2357 bits (1276), Expect = 0.0
Identities = 1409/1472 (96%), Gaps = 14/1472 (1%)
Strand=Plus/Plus
Query 65 AACGTAGAGATATAGCAA-AATGGCTGCGACGCTTACTGGATCAGGGATTGCTCTAGGGT 123
|||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1 AACGTAGAGATATAGCAACAATGGCGGCGACGCTTACAGGATCAGGGATTGCTCTAGGGT 60
Query 124 TTTCGTGCTCCGCAAAGTTCTCTAAGAGAG---------CTTC-T--TCGTCGTCCAACC 171
||||||| ||||| |||||||||||||||| |||| | |||||||||||||
Sbjct 61 TTTCGTGTTCCGCTAAGTTCTCTAAGAGAGCCTCTTCTTCTTCTTCGTCGTCGTCCAACC 120
Query 172 GTCGCTGCATCAAGATGTCGGTTTCGGTAGAGGAGAAGACGAAGAAATTCACTCTTCAGA 231
||||||||||||||||||| ||||| ||||| ||||| |||||||| |||||||||||||
Sbjct 121 GTCGCTGCATCAAGATGTCAGTTTCAGTAGAAGAGAAAACGAAGAAGTTCACTCTTCAGA 180
Query 232 AATCTGAGGAAGCTTTCAATGCTGCGAAGAACTTAATGCCTGGAGGTGTGAACTCACCTG 291
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 AATCTGAGGAAGCTTTCAATGCTGCCAAGAACTTAATGCCTGGAGGTGTGAACTCACCTG 240
Query 292 TACGTGCTTTCAAATCTGTTGGTGGACAACCAGTGGTGATGGATTCTGCAAAGGGCTCAC 351
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 241 TACGTGCTTTCAAATCTGTTGGTGGACAACCAGTTGTGATGGATTCTGCAAAGGGTTCAC 300
Query 352 GAATAAGAGACATTGATGGAAATGAATACATTGACTATGTTGGATCTTGGGGACCTGCTA 411
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 301 GAATAAGAGACATTGATGGAAATGAATACATTGATTATGTTGGTTCTTGGGGACCAGCTA 360
Query 412 TAATTGGTCATGCTGATGATGAGGTTCTTGCTGCTTTGGCTGAGACAATGAAGAAAGGAA 471
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 TAATTGGTCATGCTGATGATGAGGTTCTTGCAGCTTTGGCTGAGACAATGAAGAAAGGAA 420
Query 472 CAAGCTTTGGTGCTCCTTGTCTCTTAGAGAATGTTCTTGCTGAGATGGTGATTTCAGCTG 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CAAGCTTTGGTGCTCCTTGTCTCTTAGAGAATGTTCTTGCTGAGATGGTGATTTCAGCTG 480
Query 532 TTCCAAGTATTGAAATGGTTCGGTTTGTTAACTCCGGTACAGAGGCATGTATGGGTGTGC 591
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 481 TTCCAAGTATTGAAATGGTTCGGTTTGTTAACTCGGGTACGGAGGCATGTATGGGCGTGC 540
Query 592 TACGTCTTGCTCGTGCCTTCACAGGGAAACAAAAGTTCATCAAGTTTGAAGGTTGTTATC 651
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 541 TACGTCTTGCTCGTGCCTTCACAGGGAAACAAAAGTTCATCAAGTTCGAAGGTTGTTATC 600
Query 652 ATGGTCATGCAAACTCTTTCCTTGTCAAAGCAGGTAGTGGTGTAGCTACTTTGGGTCTAC 711
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 601 ATGGTCATGCAAACTCTTTCCTTGTCAAAGCAGGTAGTGGTGTCGCTACTTTGGGTCTAC 660
Query 712 CTGACTCGCCTGGGGTCCCCAAAGCAGCTACTTCAGATACTTTAACAGCTCCATACAATG 771
||||||||||||| ||||| ||| ||||||||||||||||| |||||||||| |||||||
Sbjct 661 CTGACTCGCCTGGTGTCCCTAAATCAGCTACTTCAGATACTCTAACAGCTCCTTACAATG 720
Query 772 ATATTGCTGCTGTTGAGAAGCTTTTTGAGGCAAACAAAGGAGAGATTGCTGCCATCATTC 831
||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 721 ATATTGCTGCTGTTGAGCAGCTTTTTGAGGCAAACAAAGGCGAGATAGCTGCGATCATTC 780
Query 832 TTGAACCTGTTGTTGGTAACTCGGGTTTTATTACACCTAAACCAGAGTTCATTGAGGGAA 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TTGAACCTGTTGTTGGTAACTCGGGTTTTATTACACCTAAACCAGAGTTCATTGAGGGAA 840
Query 892 TACGCCGGATCACTAAAGACAATGGTGCTCTTCTTATTTTCGATGAAGTCATGACTGGTT 951
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 841 TACGCCGGATTACTAAAGACAATGGTGCTCTTCTTATTTTCGATGAAGTCATGACGGGTT 900
Query 952 TTCGTTTAGCCTATGGTGGAGCTCAAGAATACTTTGGAATCACACCTGACTTAACAACTC 1011
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCCGTTTAGCCTATGGTGGAGCTCAAGAATACTTTGGAATCACACCTGACTTAACAACTC 960
Query 1012 TTGGGAAAATCATCGGTGGTGGTCTTCCTGTGGGAGCATACGGTGGAAGAAGAGACATCA 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTGGGAAAATCATCGGTGGTGGTCTTCCTGTGGGAGCATACGGTGGAAGAAGAGACATCA 1020
Query 1072 TGGAAATGGTTGCACCCGCAGGACCGATGTATCAAGCTGGTACGCTAAGTGGTAATCCGT 1131
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TGGAAATGGTTGCACCCGCAGGACCGATGTATCAAGCTGGTACGCTAAGTGGTAATCCGC 1080
Query 1132 TGGCTATGACAGCGGGTATACACACGCTGAAGCGGTTAAGTCAGCCAGGGACATATGAAT 1191
||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 1081 TGGCTATGACAGCGGGTATTCACACACTGAAGCGGTTAAGTCAGCCTGGGACATATGAAT 1140
Query 1192 ACTTAGACAAGATCACAAAAGAGCTTACAAATGGGATACTAGAAGCCGGGAAGAAAACCG 1251
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1141 ACTTAGACAAGATCACAAAGGAGCTTACAAATGGGATACTAGAAGCCGGGAAGAAAACGG 1200
Query 1252 GGCATGCGATGTGTGGCGGTTACATAAGCGGGATGTTCGGTTTCTTCTTCACGGAAGGAC 1311
|||||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||
Sbjct 1201 GGCATGCGATGTGTGGTGGATACATAAGTGGGATGTTCGGTTTCTTCTTCACTGAAGGAC 1260
Query 1312 CCGTCTATGATTTCTCGGATGCAAAGAAGAGTGATACAGAGAAGTTTGGAAAGTTTTTCA 1371
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1261 CCGTCTACGATTTCTCGGATGCCAAGAAGAGCGATACAGAGAAGTTTGGAAAGTTTTTCA 1320
Query 1372 GAGGAATGTTGGAAGAAGGTGTCTACTTGGCACCTTCTCAATTCGAGGCCGGTTTTACTA 1431
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1321 GAGGAATGTTGGAAGAAGGTGTCTACTTGGCACCTTCTCAATTCGAGGCCGGTTTTACCA 1380
Query 1432 GCTTGGCTCACACTTCAGAAGACATCCAATTCACTATCGCAGCGGCCGAGAAGGTTCTAA 1491
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GCTTGGCTCATACTTCAGAAGACATCCAATTCACTATCGCAGCGGCCGAGAAGGTTCTAA 1440
Query 1492 GTCGGCTCTAAAATGTCTCTGGAAGCTTCCAG 1523
||||| |||||||||| |||||||||||||||
Sbjct 1441 GTCGGATCTAAAATGT-TCTGGAAGCTTCCAG 1471
> Ahg496546 jgi|Araly1|496546|fgenesh2_kg.8__2362__AT5G63570.1
Length=1681
Score = 1295 bits (701), Expect = 0.0
Identities = 1211/1455 (83%), Gaps = 43/1455 (3%)
Strand=Plus/Plus
Query 78 AGCAA-AATGGCTGCGACGCTTACTGGATCAGGG-ATTGCTCTAGGGTTTTCGTGCTCCG 135
||||| ||| | ||||||||||| ||||| ||| | |||| | ||||||||||| |||
Sbjct 60 AGCAACGATGTCGGCGACGCTTACAGGATC-GGGAACTGCTTTGGGGTTTTCGTGTTCCT 118
Query 136 CAAAGTTCTCTAAGAG-A--GCTTCTTCGTCGTC--C-AACCG-TCGCTGCATCAAGATG 188
||||| |||| || || | |||||||| |||| | || || | ||||||||||||||
Sbjct 119 CAAAGATCTCGAAAAGAATTTCTTCTTCGCCGTCTTCTAATCGAT-GCTGCATCAAGATG 177
Query 189 TCGGTTTCGGTAGAGGAGAAGACGAAGAA-ATTCACTCTTCAGAAATCTGAGGAAGCTTT 247
|| ||||| || || ||||||| ||| || ||||||||||||||||| |||||||||||
Sbjct 178 TCTGTTTCCGTCGACGAGAAGAAGAA-AAGTTTCACTCTTCAGAAATCCGAGGAAGCTTT 236
Query 248 CAATGCTGCGAAGAACT-TAATGCCTGGAGGTGTGAACTCACCTGTACGTGCTTTCAAAT 306
||||||||| ||||| | ||||||||||||||||||| || ||||| || || |||||||
Sbjct 237 CAATGCTGCTAAGAA-TCTAATGCCTGGAGGTGTGAATTCCCCTGTTCGAGCCTTCAAAT 295
Query 307 CTGTTGGTGGACAACCAGTGGTGATGGATTCTG-CAAAGGGCTCACGAATAAGAGACATT 365
| |||||||||||||| || |||| ||||| | ||| |||||| ||| | ||||||
Sbjct 296 CCGTTGGTGGACAACCTGTTTTGATTGATTCCGTTAAA-GGCTCAAAAATGTGGGACATT 354
Query 366 GATGGAAATGAATACATTGACTATGTTGGATCTTGGGGACCTGCTATAATTGGTCATGCT 425
||||||||||| ||||||||||| ||||| ||||||||||| ||||| ||||| |||||
Sbjct 355 GATGGAAATGAGTACATTGACTACGTTGGCTCTTGGGGACCAGCTATTATTGGCCATGCC 414
Query 426 GATGATGAGGTTCTTGCTGCTTTGGCTGAGACAATGAAGAAAGGAACAAGCTTTGGTGCT 485
||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 415 GATGACGAGGTTCTTGCAGCTTTAGCTGAGACGATGAAGAAAGGAACAAGCTTTGGTGCT 474
Query 486 CCTTGTCTCTTAGAGAATGTTCTT-GCTGAGATGGTGATTTCAGCTGTTCCAAGTATTGA 544
||||||||||||||||||||| || ||||||||||| || ||||||||||| || |||||
Sbjct 475 CCTTGTCTCTTAGAGAATGTT-TTAGCTGAGATGGTTATATCAGCTGTTCCCAGCATTGA 533
Query 545 AATGGTTCGGTTTGTTAACTCCGGTACAGAGGCATGTATGGGTGTGCTACGTCTTGCTC- 603
||||||||||||||| ||||| ||||| || || |||||||||||||| ||||| || |
Sbjct 534 AATGGTTCGGTTTGTCAACTCTGGTACTGAAGCGTGTATGGGTGTGCTCCGTCTCGC-CA 592
Query 604 GTGCCTTCAC-AGGGAAACA-AAAGTTCATCAAGTTTGAAGGTTGTTATCATGGTCATGC 661
| || ||||| | ||| | ||| ||||||||||||||||| |||||||| ||||||||
Sbjct 593 GAGCTTTCACTAAC-AAAGAGAAA-TTCATCAAGTTTGAAGGGTGTTATCACGGTCATGC 650
Query 662 AAACTC-TTTCCTTGTCAAAGCAGGTAGTGGTGTAGCTACTTT-GGGTCTACCTGACTCG 719
||| | |||| |||| ||||| ||||| |||||||| ||| | ||| ||||| |||||
Sbjct 651 TAACGCCTTTC-TTGTTAAAGCTGGTAGCGGTGTAGCCACTCTAGGG-CTACCGGACTCA 708
Query 720 CCTGGGGTCCCCAAAGCAGCTACTTCAGATACTTTAACAGCTCCATACAATGATATTGCT 779
|| || ||||| |||||||||||||| ||||||||||||||||| ||||| ||| | |
Sbjct 709 CCAGGTGTCCCTAAAGCAGCTACTTCTGATACTTTAACAGCTCCGTACAACGATCTCGAA 768
Query 780 GCTGTTGAGAAGCTTTTTG-AG-GCAAACAAAGGAGAGATTGCTGCCATCATTCTTGAAC 837
|||||||||||||| |||| || ||| | || || |||||| |||| | ||||| ||||
Sbjct 769 GCTGTTGAGAAGCTCTTTGCAGCGCATA-AAGGG-GAGATTTCTGCGGTTATTCTCGAAC 826
Query 838 CTGTTGTTGGTAACTCGGGTTTTATTACACCTAAACCAGAGTTCATTGAGGGAATACGCC 897
| |||||||||||||| || || || | |||| ||| || ||||| | || ||||||
Sbjct 827 CCGTTGTTGGTAACTCTGGATTCATCCCTCCTACACCGGAATTCATCAACGGTTTACGCC 886
Query 898 GGATCACTAAAGACAATGGTGCTCTTCTTATTTTCGATGAAGTCATGACTGGTTTTCGTT 957
| | |||||||||||||||| |||||| || ||||||||||||||||| || ||||||
Sbjct 887 AGCTTACTAAAGACAATGGTGTTCTTCTCATCTTCGATGAAGTCATGACCGGATTTCGTC 946
Query 958 TAGCCTATGGTGGAGCTCAAGAATACTTTGGAATCACACCTGA-CTTAACAACTCTTGGG 1016
|||||||||||||||| ||||||||||| |||||||| ||||| || ||| ||||||||
Sbjct 947 TAGCCTATGGTGGAGCCCAAGAATACTTCGGAATCACGCCTGATCT-AACTACTCTTGGT 1005
Query 1017 AAAATCATCGGTGGTGGTCTTCCTGTGGGAGCATACGGTGGAAGAAGAGACATCATGGAA 1076
||||| || || || |||||||| ||||||||||||||||| ||| | || || |||||
Sbjct 1006 AAAATTATTGGCGGGGGTCTTCCCGTGGGAGCATACGGTGGGAGACGTGATATTATGGAG 1065
Query 1077 ATGGTTGCACCCGCAGGACCGATGTATCAAGCTGGTACGCTAAGTGGTAATCCGTTGGCT 1136
|||||||| ||||||||||| ||||| |||||||| || ||||||||||||||| ||||
Sbjct 1066 ATGGTTGCGCCCGCAGGACCAATGTACCAAGCTGGGACTCTAAGTGGTAATCCGCTGGCA 1125
Query 1137 ATGACAGC-GGGTATACACACGCTGAAGCGGTTAA-GTCAGCCAGGGACATATGAATACT 1194
||||| || ||| || ||||||||||||||| ||| | ||| |||| |||||||| || |
Sbjct 1126 ATGACTGCAGGG-ATTCACACGCTGAAGCGGCTAAAG-CAGGCAGGAACATATGAGTATT 1183
Query 1195 TAGACAAGATCACAAAAGAGCTTACAAATGGGATACT-AGAAGCCGGGAAGAAAACCGGG 1253
|||||||||||||||| || || || || || || || |||||| || ||||||||||||
Sbjct 1184 TAGACAAGATCACAAAGGAACTAACCAACGGAAT-CTTAGAAGCTGGAAAGAAAACCGGG 1242
Query 1254 CATGCGATGTGTGGCGGTTACATAAGCGGGATGTTCGGTTTCTTCTTCACGGAAGGACCC 1313
||| | ||||| |||||||| |||||||| ||||| |||||||| ||| | ||||||||
Sbjct 1243 CATCCAATGTGCGGCGGTTATATAAGCGGTATGTTTGGTTTCTTTTTCGCAGAAGGACCG 1302
Query 1314 GTCTATGA-TTTCTCGGATGCAAAGAAGAGTGATACAGAGAAGTTTGGAAAGTTTTTCAG 1372
||||| | ||| | |||||||||||||| || || ||||||||||| | |||||||||
Sbjct 1303 GTCTACAACTTTG-CAGATGCAAAGAAGAGCGACACCGAGAAGTTTGGTAGGTTTTTCAG 1361
Query 1373 AGGAATGTTGGAAGAAGGTGTCTACTTGGCACCTTCTCAATTCGAGGCCGGTTTTACTAG 1432
|||||||||||||||||||| ||||| ||||| ||||| || |||||||| ||||| ||
Sbjct 1362 GGGAATGTTGGAAGAAGGTGTTTACTTTGCACCGTCTCAGTTTGAGGCCGGGTTTACGAG 1421
Query 1433 CTTGGCTCACACTTCAGAAGACATCCAATTCACTATCGCAGCGGCCGAGAAGGTTCTAAG 1492
||||||||||||| | || || || || ||||| || || ||||| |||| ||| || ||
Sbjct 1422 CTTGGCTCACACTCCCGAGGATATACAGTTCACGATTGCTGCGGCTGAGAGGGTACTCAG 1481
Query 1493 TCGGCTCTAAAATGT 1507
| || |||| |||||
Sbjct 1482 TAGGATCTAGAATGT 1496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62010918860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5