BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48750.1
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485229 jgi|Araly1|485229|fgenesh2_kg.5__1221__AT3G48750.1 1701 0.0
> Ahg485229 jgi|Araly1|485229|fgenesh2_kg.5__1221__AT3G48750.1
Length=1262
Score = 1701 bits (921), Expect = 0.0
Identities = 1064/1127 (94%), Gaps = 33/1127 (3%)
Strand=Plus/Plus
Query 1 CCTTCCCTAGTCCTCCTCTCTTCAAGCTTTTCACAGAAAACCACCACCCTTCTCTCTCTA 60
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1 CCTTCCCTAGTCCTCCTCTCTTCAAGCTTTTCACAG--AA--ACCACCCTTCTCTCTCTA 56
Query 61 CTGCCTTTTTACCAC-------AGAGA-AGAGAGAGGATCCGTCGGTGTG--CTAGTCTC 110
||||| ||||||||| ||||| |||||||||||||||||||||| ||| ||||
Sbjct 57 CTGCC-TTTTACCACTGAGAAGAGAGAGAGAGAGAGGATCCGTCGGTGTGTACTAATCTC 115
Query 111 ACTGACACTACATCCGATCGTCGCCGGTGACATTTTATAAGTGTGGAGTTTACTTCAGCT 170
||||||||||||||||||||||||||||||||||||| |||||||||| || ||
Sbjct 116 ACTGACACTACATCCGATCGTCGCCGGTGACATTTTACAAGTGTGGAG-----TT--GC- 167
Query 171 TTATTATTCAGGAATTGATGGATCAGTACGAGAAAGTTGAGAAGATTGGTGAAGGAACTT 230
| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 ----T-TT-----ATTGATGGATCAGTACGAGAAAGTTGAGAAGATTGGTGAAGGAACTT 217
Query 231 ACGGTGTGGTTTATAAGGCACGTGACAAAGTGACTAATGAGACAATTGCTTTGAAGAAGA 290
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 218 ACGGTGTGGTTTATAAGGCACGAGACAAAGTCACTAATGAGACAATAGCTTTGAAGAAGA 277
Query 291 TCAGGCTAGAGCAGGAGGATGAAGGTGTTCCTAGCACAGCAATCAGAGAAATCTCCCTCT 350
|| |||| |||||||||||||||||||| ||||| ||||| || ||||||||||||||||
Sbjct 278 TCCGGCTGGAGCAGGAGGATGAAGGTGTACCTAGTACAGCCATTAGAGAAATCTCCCTCT 337
Query 351 TGAAAGAAATGCAGCACAGCAACATTGTCAAATTGCAGGATGTGGTGCACAGCGAGAAAC 410
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 338 TGAAAGAAATGCAGCACAGTAACATTGTCAAATTGCAGGATGTGGTGCACAGCGAGAAAC 397
Query 411 GTTTGTATCTGGTTTTTGAGTATCTTGACTTGGATCTCAAAAAGCACATGGATTCTACTC 470
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 398 GTTTGTATCTGGTATTTGAGTATCTTGACTTGGATCTCAAAAAGCACATGGATTCAACTC 457
Query 471 CTGATTTCTCCAAGGATCTACATATGATCAAAACATATCTTTACCAGATTCTCCGTGGAA 530
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 CTGATTTCTCTAAGGATCTACATATGATCAAAACATATCTTTACCAGATTCTCCGTGGAA 517
Query 531 TTGCGTATTGCCACTCTCATAGGGTTCTCCATCGTGATCTGAAGCCACAGAATTTGTTGA 590
||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||
Sbjct 518 TTGCGTATTGCCACTCTCACAGGGTTCTCCATCGTGATTTAAAGCCACAGAATTTGTTGA 577
Query 591 TTGATCGCCGCACAAACTCACTGAAGCTTGCTGATTTTGGACTGGCCAGAGCATTCGGTA 650
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 578 TTGATCGCCGCACAAACTCACTAAAGCTTGCAGATTTTGGACTGGCCAGAGCATTCGGTA 637
Query 651 TCCCTGTCAGGACATTTACTCATGAGGTTGTTACTCTCTGGTACCGAGCACCAGAGATAC 710
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 638 TCCCTGTCAGGACATTTACTCATGAGGTGGTTACTCTCTGGTACCGAGCACCAGAGATAC 697
Query 711 TCCTAGGATCTCATCATTACTCTACACCTGTTGATATTTGGTCTGTGGGGTGCATATTTG 770
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 698 TCCTAGGATCTCATCATTACTCTACACCTGTTGATATTTGGTCTGTGGGATGCATATTTG 757
Query 771 CTGAGATGATCAGCCAAAAGCCCTTATTTCCTGGAGACTCCGAGATTGATCAACTCTTCA 830
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 758 CTGAGATGATCAGCCAAAAGCCCTTATTTCCTGGAGACTCTGAGATTGATCAACTCTTCA 817
Query 831 AGATTTTCAGAATCATGGGAACTCCGTACGAGGATACATGGCGTGGGGTAACTTCTCTAC 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 818 AGATTTTCAGAATCATGGGAACTCCGTACGAGGATACATGGCGTGGGGTAACTTCGCTGC 877
Query 891 CGGATTATAAATCTGCTTTCCCTAAATGGAAACCAACGGACCTAGAAACTTTTGTCCCCA 950
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 878 CGGATTATAAATCTGCTTTCCCTAAATGGAAACCAACGGACCTAGAAAGTTTTGTCCCCA 937
Query 951 ATCTAGATCCCGATGGAGTCGATCTCCTTTCTAAAATGCTGTTAATGGATCCGACCAAAA 1010
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 938 ATCTAGATCCCGATGGAGTAGATCTCCTTTCTAAAATGCTGTTAATGGATCCGACCAAAA 997
Query 1011 GAATCAACGCAAGAGCCGCCCTGGAGCATGAATACTTCAAGGATCTTGGAGGCATGCCTT 1070
|||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||
Sbjct 998 GAATCAACGCAAGAGCTGCCCTGGAGCATGAATACTTCAAGGATCTTGGCGTCATGCCTT 1057
Query 1071 AGAAAGGCATAAAACCAGTAATCTCCTTCATTCTATATATAATTATC 1117
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 AGAAAGGCATAAAACCAGTAATCTCCTTCATTCTATATATAATTATC 1104
Score = 193 bits (104), Expect = 4e-48
Identities = 118/124 (95%), Gaps = 3/124 (2%)
Strand=Plus/Plus
Query 1201 aaaaaaaGAAAGAAGAAGATTTCGAGTGTGtttttttttACTTCTAAGCTTTTGAGATCA 1260
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AAAAAAA-AAAGAAGAAGATTTCGAGTGTGTTTTTTTTTACTTCTAAGCTTTTGAGATCA 1199
Query 1261 GTTTCTTGTATCTTATTTTACCCAGAATAT-AGTATTTCCCTATATGAAATATGGTTTTT 1319
|||||||||||||| |||||| |||||||| | |||| ||||||||||||||||||||||
Sbjct 1200 GTTTCTTGTATCTTCTTTTACGCAGAATATTA-TATTCCCCTATATGAAATATGGTTTTT 1258
Query 1320 GTTT 1323
||||
Sbjct 1259 GTTT 1262
Score = 62.1 bits (33), Expect = 1e-08
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 1132 GAAGAACAATATTAATGGGTTTTGTTTATTCTTTTT 1167
||| ||||||||||||||||||||||||||||||||
Sbjct 1105 GAACAACAATATTAATGGGTTTTGTTTATTCTTTTT 1140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52983530795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5