BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48760.1
Length=1746
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937642 jgi|Araly1|937642|scaffold_501833.1 2492 0.0
> Ahg937642 jgi|Araly1|937642|scaffold_501833.1
Length=1480
Score = 2492 bits (1349), Expect = 0.0
Identities = 1434/1476 (97%), Gaps = 1/1476 (0%)
Strand=Plus/Plus
Query 90 tttttCTGGGTTTCTTCCGATGTTAGATTTGCAGCCGTCAGATCGGCGTCATGGAGCTCC 149
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 TTTTTCT-GGTTTCTTCCGATGTTAGATTTGCAGCCGTCAGATCGGCGTCATGGAGCTCC 64
Query 150 GAGTAGTAGCGGCGGTGTTAGTGGTGGTGATGAGCTGATCAGAACTTATAAAGGCTGGAA 209
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 GAGTAGTAGCGGCGGTGGTAGTGGTGGTGATGAGCTGATCAGAACTTATAAAGGCTGGAA 124
Query 210 AGGCAATAACGTGTTCTTCCTTGGAGGAAGGCTCGTGTTTGGACCTGATGCTCGATCTAT 269
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 125 AGGAAATAACGTGTTCTTCCTTGGAGGAAGGCTCGTGTTTGGACCCGATGCTCGATCTAT 184
Query 270 TCTCATCACCGTCTTCTTAATTACAGCTCCTGTCATTGTATTCTGTATTTTTGTTGGCAG 329
||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 185 TCTGATCACCATCTTCTTGATTACAGCTCCTGTCATTGTATTCTGTATTTTTGTTGGCAG 244
Query 330 AAAATTTATCGATGATTTTCCTCACCATAGAGGAGTATCAGTTTTAGCTGTTGCTGTTGG 389
|||||| ||||||||||| ||||||||||||||||||||| |||||||||| ||||||||
Sbjct 245 AAAATTCATCGATGATTTCCCTCACCATAGAGGAGTATCAATTTTAGCTGTCGCTGTTGG 304
Query 390 TCTGATTTTATTAGATCTAGTATTTCTTCTTCTAACCTCCGCGAGAGACCCAGGGATAAT 449
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 305 TCTGATTTTATTAGATCTAATATTTCTTCTTCTAACCTCCGCGAGAGACCCAGGAATAAT 364
Query 450 ACCACGTAATCTGTATCCTCCTGAACCAGAGAGTAATGAAGGCAATGGAGAACCACGTCT 509
|||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 365 ACCACGTAATCTATATCCTCCTGAACCAGAGGGTAATGAAGGCAATGGAGAACCGCGTCT 424
Query 510 TGCTCATACTCCTCAGAGTCGGTTGCCTCGGACAAAGGATATGATTGTAAATGGAATTAC 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 TGCTCATACTCCTCAGAGTCGGTTGCCTCGGACAAAGGATATGATTGTAAATGGAATTAC 484
Query 570 TGTCAAGATCAAATACTGTGACACATGCATGCTTTACAGACCGCCCCGTGCTTCTCATTG 629
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 485 TGTGAAGATCAAATACTGTGACACATGCATGCTTTACAGACCACCCCGTGCTTCTCATTG 544
Query 630 TTCGATTTGCAACAACTGCGTCGAGAAGTTTGATCACCACTGTCCTTGGCTTGGTCAGTG 689
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 545 TTCGATTTGCAACAACTGCGTTGAGAAGTTTGATCACCACTGTCCTTGGCTTGGTCAGTG 604
Query 690 CATTGGATTGAGAAACTATAGGTTCTACTTCATGTTTGTGTTGTGCTCAACTCTTCTCTG 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 CATTGGATTGAGAAACTATAGGTTCTACTTCATGTTTGTGTTGTGCTCAACTCTTCTCTG 664
Query 750 CATTTATGTCCATGTGTTCTGCTGGATCTACGTCAAGCGGATAATGGATAGTGAGAACAT 809
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 665 CATTTATGTCCATGTGTTCTGCTGGATCTACGTCAAGCGTATAATGGATAGTGAAAACAT 724
Query 810 AAACATCTGGAAATCGTTTCTCAAGACTCCTGCTTCCATTGCACTAATAATCTACACTTT 869
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 725 AAACATCTGGAAATCGTTTATCAAGACTCCTGCTTCCATCGCACTAATAATCTACACTTT 784
Query 870 CATTTGCGTCTGGTTTGTTGGTGGGCTTACCTGTTTCCACTTGTACCTAATGAGTACCAA 929
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 785 CATTTGCGTCTGGTTTGACGGTGGGCTTACCTGTTTCCACTTGTACCTAATGAGTACCAA 844
Query 930 TCAGTCAACTTACGAAAACTTTAGGTATCGGTATGATAGACATGAGAACCCCTTCAACAA 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 TCAGTCAACTTACGAAAACTTTAGGTATCGGTATGATAGACATGAGAACCCCTTCAACAA 904
Query 990 AGGAATAGTGGGGAACTTTATGGAAGTTTTCTGCACAAATGTTGCCGTATCTCAGAACAG 1049
||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||
Sbjct 905 AGGAATAGTGGGGAACTTTATGGAAGTATTCTGCACAAACGTTGCCATATCTCAGAACAG 964
Query 1050 TTTCAGAGAAAAGGTTTCAAAGGAGCCAGCAATACCACCAAGGACAGTAAATGGAGGGAT 1109
|||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 965 TTTCAGAGCAAAGGTTTCAAAGGAGCCTGCAATACCACCAAGGACAGTAAACGGAGGGAT 1024
Query 1110 GTCAAGCCCGAGCTTACAGAAAGTTTCCAACGACATAGAGATGGGGAGAAAACCAGTGTG 1169
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1025 GTCAAGCCCGAGCTTACAGAAAGTTTCCCACGACATAGAGATGGGAAGAAAACCAGTGTG 1084
Query 1170 GCACGAGACAGTAGAAGAAGAGCTCGGTGACATCGAAAAGGACATGGAAGCAGGGGTTGC 1229
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1085 GCACGAGACAGTAGAAGAAGAGCTCGGTGACATGGAAAAGGACATGGAAGCAGGGGTTGC 1144
Query 1230 ATCACGGGATTTGAGCAGAATGCTTCCTCCAGAAGAATCTGAAGGACGAGGGATTATGCA 1289
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1145 ATCACGGGATTTGAGCAGAATGCTTCCTCCAGAAGAATCTGAAGGACGCGGGATAATGCA 1204
Query 1290 TTCAAGAGAGTCAAGCAGGGGACGCGGGATTATGCATTCAAGAGAGTCAAGCAGGGGAAG 1349
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1205 TTCAAGAGAGTCAAGCAGGGGACGTGGGATTATGCATTCGAGAGAGTCAAGCAGGGGAAG 1264
Query 1350 AAGAGGAGGGAGCTGGGAATTGTCAAGCCGTGTAAACGAAGATTTAAGAACCAGAGATGA 1409
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1265 AAGAGGAGGGAGCTGGGAATTGTCAAGCCGTGTTAACGAAGATTTAAGAACCAGAGATGA 1324
Query 1410 GTCTGTGTCAAGAGTCGGTGAAGACAGCTCAGAGTCTTCAGACAATGATGCTTCAAGAGA 1469
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1325 ATCTGTGTCAAGAGTCGGTGAAGACAGCTCAGAGTCTTCAGACAATGATGCTTCCAGAGA 1384
Query 1470 TTTACATGTTGAGATATATGATGCAGTAACAAGTAGAGGAAGAACCGGAACTGGTATAGG 1529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 TTTACATGTTGAGATATATGATGCAGTAACAAGTAGAGGAAGAACCGGAACTGGTATAGG 1444
Query 1530 GCGGTTATAGTCTCCGGTTTAAAGCCAATTACACTA 1565
|||||||||||||||||||| |||||||||||||||
Sbjct 1445 GCGGTTATAGTCTCCGGTTTTAAGCCAATTACACTA 1480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65515221400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5