BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48770.1
Length=6125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937643 jgi|Araly1|937643|scaffold_501834.1 8107 0.0
> Ahg937643 jgi|Araly1|937643|scaffold_501834.1
Length=5750
Score = 8107 bits (4390), Expect = 0.0
Identities = 5282/5718 (92%), Gaps = 39/5718 (1%)
Strand=Plus/Plus
Query 3 GGAGAAGGCTTTTTCACCAAATACAAGCAATATAAAGCAAGAGAAATC-GTCG-AACCGT 60
||| || ||||||||||||||| ||||||||||||||||||||||||| || | || |||
Sbjct 39 GGAAAAAGCTTTTTCACCAAATGCAAGCAATATAAAGCAAGAGAAATCTGT-GCAA-CGT 96
Query 61 T-C-CA-GTCATCACAAACAAGATTTGGCTTGGAACTATGTTAGA-GAAGCTATTGATTC 116
| | || ||||||| |||||||||||||| ||||||||||||| | ||| ||||||||||
Sbjct 97 TCCACACGTCATCAGAAACAAGATTTGGCGTGGAACTATGTTA-ATGAAACTATTGATTC 155
Query 117 AAGACGGAGAAAAGTTATAACTTGTGGCTTTTGTGGTAAACAATACGTTGGAAGTGAAAT 176
|||| ||| |||||||||| |||||| |||||||||||||||||| ||||||||||||||
Sbjct 156 AAGAGGGAAAAAAGTTATAGCTTGTGACTTTTGTGGTAAACAATATGTTGGAAGTGAAAT 215
Query 177 AAATAGAATGAAACATCACTTGGCTGGATTGAATAATAGAAGTGCATGCCAAAAGGTTTC 236
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 216 AAATAGAATGAAACATCACTTGGCTGGATTGACTAACAGAAGTGCATGCCAAAAGGTTTC 275
Query 237 TTCCGAGGTTCAACATTCGATGAGAAAATCATTGGAAGAAAACAAAGAGAAACCGAAGAA 296
|||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 276 TTCCAAGGTTCAACATTCGATGAGAAAATCATTGGAAGAAAACGAAGAGAAATCGAAGAA 335
Query 297 AATAATCGTTGTGGATCTTGATATGCAAGACGATGAAGTAAATGTTGGTCAAAGTTCTCA 356
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 336 AATAATCATTGTGGATCTTGATATGCAAGACGATGAAGTAAAGGTTGGTCAAAGTTCTCA 395
Query 357 TCAATCTTGCAGTTCTTCAAGTCGAAAAAGAAAGGTTCAACATTCGATGAGAAAATCATT 416
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 396 TCAATCTTGCAGTTCTTCAAGTCGAAAAAGAAAGGTTCAACATTCCATGAGAAAATCATT 455
Query 417 GGAAGAAACCGAAGAGAAACTGAAGCAAATAATTGTTGTTGATCTTGATATGCAAGACAA 476
| |||||| |||||||||||||||| ||||||| ||||| |||||||||||||||||| |
Sbjct 456 GAAAGAAAACGAAGAGAAACTGAAGAAAATAATCGTTGTGGATCTTGATATGCAAGACGA 515
Query 477 TGAAGTAAATGTTGGTCAAAGTTCTCTTCAATCATTCAGTTCTTCAAATCGAAAAAGAAA 536
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 516 TGAAGTCCATGTTGGTCAAAGTTCTCATCAATCATTCAGTTCTTCAAATCGAAAAAGAAA 575
Query 537 GAGAGAAACCAAAACAAAACCAGTAATAATAGAGACAATGACGGAATCGGCTAAGCAACA 596
||||||||||||||| ||||||| ||| ||| |||||| |||||||||||||||||||
Sbjct 576 GAGAGAAACCAAAACCAAACCAG---TAAGAGAAACAATGGCGGAATCGGCTAAGCAACA 632
Query 597 CATTGAACGAATTCGTCGGACTAAGTTTTCAATCGGTGGAGCTGAGAATCCGTTGACGGA 656
| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 633 CGTTGAACGAATTCGTCGGACTAAGTTTTCAATCGGTGGTGCTGAAAATCCGTTGACGGA 692
Query 657 GGATCTTCATCAAGCTGTGAAGAATCTCTCCGCTGAGCTCTATGCAAAGGATGTTCACTT 716
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 693 GGATCTTCATCAGGCTGTGAAGAATCTCTCCGCTGAGCTCTATGCTAAGGATGTTCACTT 752
Query 717 TCTTATGGAACTTATCCAAAATGCGGAAGATAACGAGTATCCAGAAGGTGTGGATCCATC 776
|| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 753 CCTCATGGAGCTTATCCAAAATGCTGAAGATAACGAGTATCCGGAAGGTGTGGATCCATC 812
Query 777 TCTTGAATTTGTGATAACATCTGAGGATATCACAAACACCGGAGCTCCAGCCACTCTTCT 836
|||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| ||
Sbjct 813 TCTTGAGTTTGTGATAACATCTGACGATATCACGGCCACCGGAGCTCCAGCCACTCTCCT 872
Query 837 TATTTTCAACAATGAGAAAGGTTTCTCTGAGAAAAACATTGAGTCCATCTGCAGTGTT-G 895
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
Sbjct 873 TATTTTCAACAATGAGAAAGGTTTCTCTGAGAAAAACATTGACTCCATTTGCAGTGTTGG 932
Query 896 GACGGTCTACAAAGAAAGGCAATCGAAAATGCGGTTACATCGGAGAGAAAGGAATCGGTT 955
|| ||||||| |||||||||||||||||| ||||||| || ||||||||||| |||||||
Sbjct 933 GA-GGTCTACCAAGAAAGGCAATCGAAAACGCGGTTATATTGGAGAGAAAGGTATCGGTT 991
Query 956 TCAAGAGTGTGTTTC-TGATTACGTCGCAGCCTTATATCTTCAGCAATGGCTATCAGATT 1014
||||||||||| ||| ||||||| || ||||| ||||| |||||||||||||||||||||
Sbjct 992 TCAAGAGTGTG-TTCTTGATTACCTCACAGCCCTATATTTTCAGCAATGGCTATCAGATT 1050
Query 1015 CGCTTCAATGAGGCACCTTGCAGCCACTGCAGCCTTGGCTACATTGTTCCTGAGTGGGTT 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 CGCTTCAATGAGGCACCTTGCAGCCACTGCAGCCTTGGCTACATTGTTCCTGAGTGGGTT 1110
Query 1075 GACCAACATCCTTCTCTTGTTGATATACAAAGGATGTATGGTTCGGGTTCTGCTCTTCCG 1134
|| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1111 GAGCAACATCCTTCTCTTGGTGATATACAAAGGATGTACGGTTCGGGTTCTGCTCTTCCG 1170
Query 1135 ACCACAACCATTATCTTGCCTTTGAAG-AGTGACAAAGTAAAGCCGGTGAAAGAACAGCT 1193
||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1171 ACCACGACCATTATCTTGCCTTTGAAGTA-TGACAAAGTAAAGCCGGTGAAAGAACAGCT 1229
Query 1194 TTCCAATGTTCATCCTGAGGTTCTGTTGTTTTTGTCAAAGATCAAACGTCTCTCTATCAG 1253
||||||||||||||||||||||||||||||| | ||||||||||| ||||| ||||||||
Sbjct 1230 TTCCAATGTTCATCCTGAGGTTCTGTTGTTTCTCTCAAAGATCAAGCGTCTTTCTATCAG 1289
Query 1254 AGAACATTGCCTAGATCCTAAGCTCAGTACTGTGAACTCAATAGGGATTGTTAGTGAGAC 1313
|||||||||||||||| | |||||||| || ||||||||||| |||||||||||||||||
Sbjct 1290 AGAACATTGCCTAGATGCAAAGCTCAGCACAGTGAACTCAATCGGGATTGTTAGTGAGAC 1349
Query 1314 TAACTTTGTGACGAGGAAGAGCATTGATGCGGAGTCATACACGATACATCTCTCAGCTTC 1373
||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 1350 TAATTTTGTGACGAGGAAGAGCATTGATGCTGAGTCTTACACAATACATCTCTCAGCTTC 1409
Query 1374 TGAGAAAGGGAAAAACTCTGAACAAGAATGCTCCTACTATATGTGGAGGCAAAAGTTTCC 1433
||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||
Sbjct 1410 TGAGAAAGGGAAAAACTCTGAACAAGAATGCAGCTACTACATGTGGAAGCAAAAGTTTCC 1469
Query 1434 AGTGAAACATGAGAACCGTGTGGACAGGAGAAGCGAAGTTGAGGAGTGGGTGATCACTTT 1493
|||||||||||||||||||||||||||||||| ||||| || || ||||| ||||||||
Sbjct 1470 TGTGAAACATGAGAACCGTGTGGACAGGAGAAGTGAAGTCGATGATTGGGTCATCACTTT 1529
Query 1494 AGCGTTTCCATTCGGAGAGCGTCTTGGCC-ATGGAAATAACTCTCCTGGTATCTATGCGT 1552
|| |||||||| |||||||||||||||| | ||||||| ||||||||||||||||||||
Sbjct 1530 GGCATTTCCATTTGGAGAGCGTCTTGGCCGA-GGAAATAGCTCTCCTGGTATCTATGCGT 1588
Query 1553 TTCTTCCCACAGAAATGGTAACAAACTTTCCCTTCATCATTCAAGCCGATTTCATTCTAG 1612
||||||||||||||||||||||||||||||||||||| ||||| || ||||| || || |
Sbjct 1589 TTCTTCCCACAGAAATGGTAACAAACTTTCCCTTCATAATTCAGGCAGATTTTATCCTTG 1648
Query 1613 CATCGTCTAGAGAAA-TGATCCTTTTAGATGATATATGGAACCAAGGGATTCTCAACTGT 1671
| ||||| || || | | || || || |||||||||||||||||||||||||||| ||||
Sbjct 1649 CTTCGTCCAGGGAGACT-ATTCTATTGGATGATATATGGAACCAAGGGATTCTCAGCTGT 1707
Query 1672 GTACCTCTAGCATTTTTGAATGCATTCACGTCTTTGGTCAAAACGACTGATGCTCCAGTG 1731
|| ||| ||||||||||||||||||||||| | |||||||||| |||||||||||| |||
Sbjct 1708 GTCCCTATAGCATTTTTGAATGCATTCACGACCTTGGTCAAAAAGACTGATGCTCCGGTG 1767
Query 1732 TCTAGTTTGCTGCCTGCTTTTAGGTTCTTGCCTGTAAAAGAATCTAACTATGCAAAGCTG 1791
||||| | || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1768 TCTAGCGTCCTCCCTGCTTTTAGGTTCTTGCCTGTAAAAGAATCTAATTATGCAAAGCTG 1827
Query 1792 AATGTGGTCCGAGAATCTATCAGGGCAAGGGTTTGTGCAGAGGAAATTGTACCAAGCATA 1851
|||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1828 AATGTGGTGCGAGAATCTATCAAGGCAAGGGTTTGTGCAGAGGAAATTGTGCCAAGCATA 1887
Query 1852 TCTCATCAAGGACAGAAGTTCTTTTACAAGCCGTGTGAAGTTGGTCGTCTCATACCTACT 1911
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1888 TCTCATTTAGGACAGAAGTTCTTCCACAAGCCGTGTGAAGTTGGTCGTCTCATACCTACA 1947
Query 1912 TTCTGGGACATCTTAGAGAAAGCAGGAAGTGAAGGTGCGAGTCT-GCAGAACATATCATC 1970
|||||||||||||| ||||||||| ||||||||||||| || || |||||| ||||||||
Sbjct 1948 TTCTGGGACATCTTGGAGAAAGCAAGAAGTGAAGGTGCAAG-CTTGCAGAATATATCATC 2006
Query 1971 ACATGGCATCTACATTTTGAATTCCGCTTTTGACAGAACAGAATATGACAACGTTTTGAA 2030
||||| |||||||||||||||||||| ||||||||||| ||||||||||||||| ||||
Sbjct 2007 TCATGGGATCTACATTTTGAATTCCGCGTTTGACAGAACCGAATATGACAACGTTCTGAA 2066
Query 2031 CTTCTTGGGTCTGAAGCAAGTAAGCAACGAATGGTATGTAAAATGCATTCAGGGCTGTGA 2090
|||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||||| |
Sbjct 2067 CTTCTTGGGTCTAAAGCAAGTCAGCAACGAGTGGTATGTAAAATGCATGCAGGGCTGTTA 2126
Query 2091 TCTCGTGACAAGTGTGTCAGAAGCTACGTATGTGGAGGTTCTACTCTTCATCGCTGAGAA 2150
||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 2127 TCTCGTGGCAAGTGTGTCAGAAGGTACGTATATGGAGGTTCTACTCTTCATCGCTGAGAA 2186
Query 2151 TTGGCAGTGC-AGGTTTCAGAATACAAATATGGGGAAAGTTCCCCTTATCAAGTATGTTG 2209
|||||||| | |||||||||| ||| ||||||||||||||||| ||||||||||||||||
Sbjct 2187 TTGGCAGT-CTAGGTTTCAGAGTACTAATATGGGGAAAGTTCCTCTTATCAAGTATGTTG 2245
Query 2210 TCCAAAAGGGAGTGAGTTCTCTCAGCAGTTTGGGTGGTTTCAGTCCTAGGACTTTATGCT 2269
|||| ||||||||||||||||| ||||||||||||| |||||||||| |||| ||||||
Sbjct 2246 TCCAGAAGGGAGTGAGTTCTCTTAGCAGTTTGGGTGATTTCAGTCCTCGGACACTATGCT 2305
Query 2270 TGTCCACAGAGAAGAACCAGGCATGGCTACTTGATTGGAACGATGAGTTCAGATGTATGT 2329
||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 2306 TGTCCACTGAGAAGAACCAGGCATGGCTACTTGATTGGAGTGATGAGTTCAGATGCATGT 2365
Query 2330 CTAACTTCGTCTTCATGCCACCAACAACCCGGACAGCGTTGAAAGTGTGCTCCAAGAAGG 2389
|||| || || |||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 2366 CTAAGTTTGTTTTCATGCCACCAACAACCCGGACAGCGTTGAAAGCGTGCTCCAAGAAAG 2425
Query 2390 AGATAATTCATACTTGGCTCAAAGAGAACGTTAAAGTCATTACTCTTAGTGTCTCTGACT 2449
||| ||| || | |||| | ||||||||| ||||||||| | |||||||||||||||||
Sbjct 2426 AGACAATACACAATTGGTTGAAAGAGAACCTTAAAGTCACCAATCTTAGTGTCTCTGACT 2485
Query 2450 ATGCAAAACATCTCCGTGAGAATCTTAATGGAGATAAGAGGCTTGTTGTTGCATATGCAC 2509
||||||||| |||| | ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2486 ATGCAAAACGTCTCGGGGAGAATCTTAATGGAGATAAGAGGCTTGTAGTTGCATATGCAC 2545
Query 2510 ACTTTCTGCATCACTCAATCTCAAAGGATTTTTTATCAAAAGAAGAAGCGGGTAAATGCT 2569
||||| |||||||||| |||||||| || |||||||| |||||||||| ||||||||||
Sbjct 2546 ACTTTTTGCATCACTCTATCTCAAAAGAGGTTTTATCAGAAGAAGAAGCTGGTAAATGCT 2605
Query 2570 GCAAAGACATGCCGCTTGTGGACAACTATGGGAATGTAAACATAAGCAGGAATGGGGTTC 2629
||||||||||||||||||||||||||||| | ||||| |||| |||||||| ||||||||
Sbjct 2606 GCAAAGACATGCCGCTTGTGGACAACTATAGTAATGTCAACACAAGCAGGAGTGGGGTTC 2665
Query 2630 TTGTTCCAGCTAGTGCAGGTAAATGGGTTAGCTTAGTTGGTTCCAATCCGTGGAGACATA 2689
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 2666 TTGTTCCAGCTAGTGCAGGTAAATGGGTTAGCTTAGTTGGTTCTAACCCGTGGAGACATA 2725
Query 2690 GTGGCTACATTGAACTTTCAGAAGAGTATTTGTTGTCGAACAGGTTCGCTGGTCTTCGGT 2749
||||||| ||||||||||||||||||||||||| ||| |||||||| |||||||||||||
Sbjct 2726 GTGGCTATATTGAACTTTCAGAAGAGTATTTGTCGTCCAACAGGTTTGCTGGTCTTCGGT 2785
Query 2750 CTAACAAGAAAGACCTTCTCGGGTTCTTGAAATCTTCTGTTGAGGCTGGAGATATACCTG 2809
||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||
Sbjct 2786 CTAACAAGAAAGACCTTCTCGTGTTCTTGAAATCTTATGTTAAGGCTGGAGATATACCTG 2845
Query 2810 ACATAGAACCTCCTAATGTTGCTATACCTGCATTGTCAGGGCCTCTTACAAAGGAGAATG 2869
||||||||||||| |||| |||||||||||| ||||| ||| |||||| |||||||||||
Sbjct 2846 ACATAGAACCTCCAAATGCTGCTATACCTGCGTTGTCCGGGGCTCTTAAAAAGGAGAATG 2905
Query 2870 TTTTGTTGCTGTTAGAGTGGATTAATAAGTGTAACAGACATTCTCTTCGTTCCAACTTTT 2929
|||| |||||||| || |||||||| | ||| | ||| |||||||||||||||||||||
Sbjct 2906 TTTTTTTGCTGTTGGATTGGATTAA-A--TGTCATAGATATTCTCTTCGTTCCAACTTTT 2962
Query 2930 TGAATTCTGTTAGAGGAGGAAGTTGGCTGAGAACAACAATGAATGGGGTTTCTGATTATC 2989
|| |||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||
Sbjct 2963 TGCATTCTGTTAGAGGAGGCAGTTGGTTGAGAACAACAATGAATGGGATTTCTGATTATC 3022
Query 2990 GGCCGCCTTCTCAGTCGTTTTATCATACTTCATCATGGGGAAGTATTCTTCAGAACGGTT 3049
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 3023 GGCCGCCTTCTCAGTCGTTTTATCATACTTCATCATGGGGAAGTATTCTGCAGAACGGAT 3082
Query 3050 CAATTCTTGTTGATATTCCGCTCGTTGATCGAAGCTACTATGGCAACGAGATTGAGAAG- 3108
|||||||||||||||||||||| |||||||||||||||||||| || |||||||| | |
Sbjct 3083 CAATTCTTGTTGATATTCCGCTGGTTGATCGAAGCTACTATGGGAAAGAGATTGACA-GC 3141
Query 3109 TACAAAGAAGAGTTGAAAATTGCTGGTGTCATGTTTGAGTTCAGTGAAGTATGTAGATTT 3168
||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||| ||||
Sbjct 3142 TACAAAGAAGAGTTGAAAACTGCTGGTGTTATGTTTGAGTTCAGTGAAGCATGTACATTT 3201
Query 3169 GTTGGCAACCACCTGATGAGTTTAGCTGAGACGTCAACACAGTCAAGCGCAAACGTGTTC 3228
|||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 3202 GTTGGCAACCACCTAATGAGTTTAGCTGAGACTTCAACACTTTCAAGCGCAAACGTGTTC 3261
Query 3229 TCAATACTGAAATTCATCAGGTACTTGAGAGAGAAGCGCCTCTCACCAGCTGATTTCATC 3288
|| |||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||
Sbjct 3262 TCGATACTGAAATTCATTAGGTACTTAAGAGAGAAGCGCCTCCCACCAGCTGATTTCATC 3321
Query 3289 ACTGCTGTCAAAAATGGTCCTTGGCTGAAGACTATTTCTGGTTACCGATCTCCAGATGGA 3348
||||| |||||| ||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 3322 ACTGCAGTCAAAGATGGTCCTTGGCTGAAGACTAGTTCTGGTTACAAATCTCCAGATGGA 3381
Query 3349 GCTGTTTTGTTCAGCGAGGAATGGAAAGCTGCGTCGTTGATCAGTGACATCCCATTCATT 3408
||||||||||||||| | || ||||||||||||| ||||||||| || || ||| |||||
Sbjct 3382 GCTGTTTTGTTCAGCCAAGACTGGAAAGCTGCGTTGTTGATCAGCGATATTCCAATCATT 3441
Query 3409 GACAGAGGTTTCTATGGTGTAGTTAGCCTCAATGGTTATAAGGAAGAGCTTGAGTTGCTT 3468
|||| || ||||||||||| ||||||||||||| ||||||||||||| ||||||||||||
Sbjct 3442 GACAAAGATTTCTATGGTGAAGTTAGCCTCAATAGTTATAAGGAAGAACTTGAGTTGCTT 3501
Query 3469 GGCGTTGTAGTTAAGTTTCCTGATAACTACAGCCTCATCGTTTCACATTTGAATACTGCA 3528
||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct 3502 GGCGTTGTAGTTAAGTTTCCTAATAACCACAGCCTCATCGTTTCTCATTTGAATACTGCA 3561
Query 3529 AAGCTGACTTACTTGACACCTGATGCAATGTTCCTAGTACTTGACTGCATGCGTCAACTG 3588
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3562 AAGCTGACTTACTTGACACCCGATGCAATGTTCCTAGTACTTGACTGCATGCGTCAACTG 3621
Query 3589 AGTCCACATAGGCTGATCAATGCCCTGTGGAATTCTTCTCAGTGCTTCAAGACAAAGAAG 3648
||||| ||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct 3622 AGTCCGCATAGGCTGATCAATGCCCTGAGGAATTCTTATCAATGCTTCAAGACAAAGAAG 3681
Query 3649 AATGGCTATAAATCTCCTGCTGAATGTTTCATACCTGATCCAGAGTGGACTTGTCTTCTT 3708
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3682 AATGGCTATAAATCTCCTGCTGAATGTTTCATACCTGATCCAGAGTGGAGTTGTCTTCTT 3741
Query 3709 TCTGTTTTTGATTGCTTCCCTTTGATCGATGATGATTTCTATGGCAGCAGAATCTTTGCC 3768
||||||||||||||||| ||| ||||| |||||||||||||||| |||||||| ||| ||
Sbjct 3742 TCTGTTTTTGATTGCTTTCCTGTGATCAATGATGATTTCTATGGAAGCAGAATATTTTCC 3801
Query 3769 TACAAAGGAGAACTGAAGCAGATTGGTGTTAAGCTTCAGCTTGAAGAAGCTGTGAAAATG 3828
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3802 TACAAAGAAGAACTGAAGCAGATTGGTGTTAAGCTTCAGCTTGAAGAAGCTGTGAAAGTG 3861
Query 3829 TTTGTGAGTACATTTAAACAGAAAGCTATCTCCTCTGGGCTAACACGATGTACCGCATCG 3888
||||| || ||||| ||||||||||| | ||||||||||||||| ||||||||||||| |
Sbjct 3862 TTTGTCAGCACATTCAAACAGAAAGCCACCTCCTCTGGGCTAACCCGATGTACCGCATTG 3921
Query 3889 TCTCTTTTATCTTGCTACAAGAAGCTGATGGGAAGTTTGT-ACAAATATCCTGAAGAACT 3947
||||||||||||||||||| |||||||||||||||| || ||| || |||||| |||||
Sbjct 3922 TCTCTTTTATCTTGCTACAGGAAGCTGATGGGAAGTA-GTTACAGATTTCCTGATGAACT 3980
Query 3948 TATGAAAAGCTTCAAACAGTTTCAATGGCTGCATACCAAACTTGGTGATTTTCGTGCACC 4007
|||||||||||||||| |||||||||||||||||||||||||||| ||||| || |||||
Sbjct 3981 TATGAAAAGCTTCAAAGAGTTTCAATGGCTGCATACCAAACTTGGCGATTTCCGAGCACC 4040
Query 4008 AAAGGACTGTATTCTCTTTGATTCAGAATGGGAACCTCTCCGCCTCATAGCGAATCTTCC 4067
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 4041 AAAGGACTGCATTCTCTTTGATTCAGACTGGGAACCCCTCCGCCTCATAGCGAATCTTCC 4100
Query 4068 CTTTATCGATGATGGTCCGAACTGGTATGGCAAGAGCATACACGAGTTCAGAAAAGAGCT 4127
|||||||||||||||||| ||||||||||| ||||||||||| || |||| |||||||||
Sbjct 4101 CTTTATCGATGATGGTCCAAACTGGTATGGTAAGAGCATACATGAATTCAAAAAAGAGCT 4160
Query 4128 CGAGAGTTTGGGAGTTACAGTTGAGCTGAGGAAAGGCATGAGCCATGTGATCAGCTCCTT 4187
|||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||| |
Sbjct 4161 CGAGAGCTTGGGAGTTACAGTTGAGCTGAGGAATGGCATGAGCCATGTGATTAGCTCCCT 4220
Query 4188 AAGTCTCCCTGATCCATCTCGCATCGCTCCTTCAAGCGCCTTGTCTCTTTTTAGGTGCAT 4247
|||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||
Sbjct 4221 AAGTCTCCCTGATCCATCTCGCATCGCTCCTTCAAGCGCCCTGTCTCTTTTGAAGTGCAT 4280
Query 4248 CAAGTTCTTGCGTGAAGACAGATTTCAGCAACTCCCTAAAGAGCTTCTTGATAAGGTCTC 4307
|| |||||||| ||||||||||||||||||||| |||| |||| ||| ||||||||| ||
Sbjct 4281 CACGTTCTTGCTTGAAGACAGATTTCAGCAACTTCCTACAGAGTTTCGTGATAAGGTTTC 4340
Query 4308 AGTAAAATGGTTGAAGACACATGCAGGTTACCGCAGTCCCGAGGAGTGTCTCTTGTTTGA 4367
|| |||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct 4341 TGTGAAATGGTTGAAGACTCATGCTGGTTACCGCTGTCCCGAGGAGTGTCTCTTGTTTGA 4400
Query 4368 TAGGACCTGGAAGTTAGAGCCGTGTGATGGTCCCTTCATCGACGAAGAGTATTATGGCTC 4427
||| | ||||||||||||||||||||||||||| |||||||||||||||| |||||| ||
Sbjct 4401 TAGCAGCTGGAAGTTAGAGCCGTGTGATGGTCCGTTCATCGACGAAGAGTTTTATGGTTC 4460
Query 4428 AGATATTAATTCGTTTAGAGAAGAGCTTATTGCGATAGGAGTTGGTCATGATTCAGACAA 4487
||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 4461 AGAGATTAAATCGTTTAAAGAAGAGCTTATTGCGATAGGAGTTGGTCATGATTCAGACAA 4520
Query 4488 AGCTTGCCAGTTGCTTGCAAGAAATGTCTATAAACTCTCAGAAACTGATGCTATTTCCCG 4547
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 4521 AGCTTGCCAGTTGCTTGCAAGCAACGTCTATAAACTTTCAGAAACTGATGCTATTTCCCG 4580
Query 4548 GGTTTATAGATTTCTTAGTGAAGCTGAATGGAAACCTGAGAAAGGTGCCTCTTCAGGTCG 4607
||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 4581 GGTTTATAGATTTCTCAGTGAAGCTGAATGGAAACCTGAGAGAGGTGCATCTTCAGGTCG 4640
Query 4608 GATTTGGATACCAAGTGATGAGAAATGGGCTGATATTTCTAGTTGTGTGCTCTTTGACAA 4667
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 4641 AATTTGGATACCAAGTGATGAGAAATGGGCTGATGTTTCTAGTTGCGTGCTCTTTGACAA 4700
Query 4668 AGATAAGCTCTTTGGATCAAAGTTTAACGTTCTTGAAAACCACTATTGTAGTGGTAAGGA 4727
|||||||||||||||||||||||| ||||||||||||||| ||||| | |||||||||||
Sbjct 4701 AGATAAGCTCTTTGGATCAAAGTTAAACGTTCTTGAAAACTACTATGGGAGTGGTAAGGA 4760
Query 4728 TCATAACCTTCTTGGTTTCTTCTCATCTGCATTTGGCGTGAGAATTAATCCGTCTATTGA 4787
|||| |||||||||| |||||||||| ||||||||||||||||| || |||||||||||
Sbjct 4761 TCATGACCTTCTTGGCTTCTTCTCATTTGCATTTGGCGTGAGAACCAACCCGTCTATTGA 4820
Query 4788 AGATTACTGCGAGTTGTGGAAATATTGGGAGAAAACTAAGAACAGATTGTCTAGTCATGA 4847
||||||||| |||||||||||| ||||||||||||| |||||||||||||||| | ||||
Sbjct 4821 AGATTACTGTGAGTTGTGGAAAGATTGGGAGAAAACGAAGAACAGATTGTCTAATGATGA 4880
Query 4848 GTGTTGTGCGTTCTGGAGCTTTGTTGTGCGACATGGTGACACGGTGAAAGCAGAGAAGCT 4907
||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 4881 GTGTTGTGCGTTCTGGAGCTTTGTTGTCCGACACAGTGACACTATGAAAGCAGAGAAGCT 4940
Query 4908 CCTCTCTGAGTCCTTTTCGCGTTTGCCTGTACACTCACCGGATTGCAACAACAACGACGG 4967
||| ||||||||||||||| ||||||| ||| | |||| |||||||||||||| || ||
Sbjct 4941 CCTTTCTGAGTCCTTTTCGTGTTTGCCCGTAAAAGCACCAGATTGCAACAACAATGAAGG 5000
Query 4968 AGTCATGTTATCTAGCATAAGCGACGTGTTCATAGCTGATGACTTGCTCTTGAAAGATAT 5027
||||||||| |||| ||| |||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 5001 AGTCATGTTGTCTAACATCAGCGACGTTTTCATCGCTGATGACTTGCTCTTGAAAGACAT 5060
Query 5028 GTTTATTGATTCTCCTGTTTTCGTTTGGTATCCAACTCCAAGCATTCCTACATTGTCCCG 5087
||| |||||||||| ||||||||| ||||||||| |||||||||| ||||||||||||||
Sbjct 5061 GTTCATTGATTCTCATGTTTTCGTCTGGTATCCATCTCCAAGCATACCTACATTGTCCCG 5120
Query 5088 AACCAGACTTATTGAGATTTATCGAA-ACATCGGTGTCAAAGAGGTCTCCAAATGCGTCG 5146
|||||| ||||||||| ||||||||| | ||||||||||||||||||||||||||||| |
Sbjct 5121 AACCAGGCTTATTGAGCTTTATCGAAGA-ATCGGTGTCAAAGAGGTCTCCAAATGCGTGG 5179
Query 5147 AGATCGCAGAAGCTGATCTAACCGGATTCAAAACCGAGCTGCAAGAGGTTGTTGATCCAA 5206
|||||||||||||||| ||||||||| ||||| ||||| ||||||||| || |||||||
Sbjct 5180 AGATCGCAGAAGCTGACCTAACCGGAGTCAAAGTCGAGCAGCAAGAGGTCGTCGATCCAA 5239
Query 5207 AGAAGAACCTGATTGGACCGGGGCTAGTGAAGCTCATTCTCGCGTTCCTCTCTGATCCAT 5266
|||| |||||||| ||||||||||||||||| |||||||||| ||||||||||||||| |
Sbjct 5240 AGAATAACCTGATCGGACCGGGGCTAGTGAATCTCATTCTCGGGTTCCTCTCTGATCCGT 5299
Query 5267 CTCTCAAGGTAGAAACTGCTGAACGTTTAAGAATCATACATAGCCTTGTTGACATCGACG 5326
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 5300 CTCTCAAGGTAGAAGCTGCTGAACGTTTAAGAATCATACATAGCCTTGTTGACCTCGACG 5359
Query 5327 TTAAAGAAACTTCGGAGACTATCACAACGGAGTATACTCTG-AGTCTACCTTCAAAGGGA 5385
||| |||||| |||||||| |||||||| |||||||||||| | | |||| |||||||||
Sbjct 5360 TTATAGAAACATCGGAGACAATCACAACAGAGTATACTCTGGATT-TACCGTCAAAGGGA 5418
Query 5386 GAGAAGCTGATTGCAAAGGCTAAGAGGATGATAAGATGGGAAAGGGAGAAAGGAGTGGTT 5445
||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 5419 GAGAAGCTGATAGCAAAAGCTAAGAGGATGATAAGATGGGAGAGAGAGAAAGGAGTGGTT 5478
Query 5446 TATGCAGAGAAGATGGAGAAAACTTGTGGTAAAAGAAAGCTTTTGGAGTACGCCACGTGT 5505
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 5479 TATGCAGAGAAGATGGAGAAAACTTGTGGTAAAAGAAAGCTTTTGGAGTATGCCACGTGT 5538
Query 5506 TTCGCTGAGGTGATTGCTAAGGGTGTGATGTGGGAGAGAGAGGATCTGATCGGACGGTTA 5565
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 5539 TTCGCTGAGGTGATTGCTAAGGGTGTGATGTGGGAGAGAGAGGATCTGATTGGACGGTTA 5598
Query 5566 TCAGAGCTTGTGAAGATGGCTTACTTGGTTGAGTTTGATGAAGAGGCTTTAGAGTTTCTT 5625
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 5599 TCAGAGCTTGTGAAGATGGCTTACTTGGTGGAGTTTGATGAAGAGGCTTTAGAGTTTCTT 5658
Query 5626 ATGAAGTCTAAGAACCTTCAGGTCTATGAAGAAGATGAGAAACTAATCTCAGATGAGTTC 5685
|||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 5659 ATGAAGTCCAAGAACCTTCAGGTTTATGAAGAAGATGAGAAACTTATCTCAGATGAATTC 5718
Query 5686 TC--TCAAGTAAACTAAG 5701
|| |||||||| |||||
Sbjct 5719 TCCCTCAAGTAACCTAAG 5736
Score = 226 bits (122), Expect = 2e-57
Identities = 141/150 (94%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 242 AGGTTCAACATTCGATGAGAAAATCATTGGAAGAAAACAAAGAGAAACCGAAGAAAATAA 301
||||||||||||| ||||||||||||||| |||||||| ||||||||| |||||||||||
Sbjct 428 AGGTTCAACATTCCATGAGAAAATCATTGAAAGAAAACGAAGAGAAACTGAAGAAAATAA 487
Query 302 TCGTTGTGGATCTTGATATGCAAGACGATGAAGTAAATGTTGGTCAAAGTTCTCATCAAT 361
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 488 TCGTTGTGGATCTTGATATGCAAGACGATGAAGTCCATGTTGGTCAAAGTTCTCATCAAT 547
Query 362 C-TTGCAGTTCTTCAAGTCGAAAAAGAAAG 390
| || ||||||||||| |||||||||||||
Sbjct 548 CATT-CAGTTCTTCAAATCGAAAAAGAAAG 576
Score = 206 bits (111), Expect = 2e-51
Identities = 139/152 (91%), Gaps = 4/152 (3%)
Strand=Plus/Plus
Query 388 AAGGTTCAACATTCGATGAGAAAATCATTGGAAGAAACCGAAGAGAAA-CTGAAGCAAAT 446
||||||||||||||||||||||||||||||||||||| |||||||||| | |||| ||||
Sbjct 280 AAGGTTCAACATTCGATGAGAAAATCATTGGAAGAAAACGAAGAGAAATC-GAAGAAAAT 338
Query 447 AATTGTTGTTGATCTTGATATGCAAGACAATGAAGTAAATGTTGGTCAAAGTTCTCTTCA 506
||| |||| |||||||||||||||||| |||||||||| |||||||||||||||| |||
Sbjct 339 AATCATTGTGGATCTTGATATGCAAGACGATGAAGTAAAGGTTGGTCAAAGTTCTCATCA 398
Query 507 ATCATT-CAGTTCTTCAAATCGAAAAAGAAAG 537
||| || ||||||||||| |||||||||||||
Sbjct 399 ATC-TTGCAGTTCTTCAAGTCGAAAAAGAAAG 429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 232075080154
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5