BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48780.1
Length=2420
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485232 jgi|Araly1|485232|fgenesh2_kg.5__1224__AT3G48780.1 2737 0.0
Ahg489227 jgi|Araly1|489227|fgenesh2_kg.6__2361__AT5G23670.1 1664 0.0
Ahg485233 jgi|Araly1|485233|fgenesh2_kg.5__1225__AT3G48790.1 632 3e-180
> Ahg485232 jgi|Araly1|485232|fgenesh2_kg.5__1224__AT3G48780.1
Length=1875
Score = 2737 bits (1482), Expect = 0.0
Identities = 1717/1823 (94%), Gaps = 45/1823 (2%)
Strand=Plus/Plus
Query 105 TTCTTCGACGAAAGGGGAAGAGGTTGTTGAATTCAAAA--tctctctc-tcttctctgtc 161
||||||||||||||||||||| | ||||||||||||| |||||||| |||||||||||
Sbjct 1 TTCTTCGACGAAAGGGGAAGA-G--GTTGAATTCAAAATCTCTCTCTCTTCTTCTCTGTC 57
Query 162 tc-tctcGCGTGAGCTAGTTGC--AGATTTTTCCAGATCTCAACATTGAAATTCAAACTC 218
|| ||||||||||| || || ||| |||||||||||||| ||||| ||||| |
Sbjct 58 TCTTCTCGCGTGAG--AGAAGCGTAGAATTTTCCAGATCTCATCATTG-AATTC--A--- 109
Query 219 AAAGCtagagagggagagagatagatagatagagggagaagaagaagaCGAACACGGAGC 278
||| || | | || ||| ||| |||||||||||||| | |||||||
Sbjct 110 AAA-CT-----------CA-A-AGCTAG--AGA---AGAAGAAGAAGACG-AGACGGAGC 149
Query 279 TGAAACAATGATTACGATCCCATACCTTACCGCTGTATCAACGTATTTCAGCTACGGCTT 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 150 TGAAACAATGATTACGATCCCATACCTTACCGCTGTATCAACGTATTTCAGCTACGGTTT 209
Query 339 GCTTTTCGCGTTTGGTCAGCTTCGCGATTACTCTCGCCTAATCTTCGATTGGTGGCGCAC 398
||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 210 GCTCTTCGCCTTTGGTCAGCTTCGCGATTACTCCCGCCTAATCTTCGATTGGTGGCGCAC 269
Query 399 CAACAATCTCCAGGGATACGCTCCGATCTGCTTGGCGCATGAGGATTTCTACATCCGACG 458
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 270 CAACAATCTCCAGGGATACGCGCCGATCTGCTTGGCGCATGAGGATTTCTACATCAGACG 329
Query 459 ATTGTATCATCGGATTCAGGACTGTTTTGGACGTCCCATTTCAAGTGCACCTGATGCTTG 518
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 330 ATTGTATCATCGGATTCAGGACTGTTTTGGACGTCCCATATCAAGTGCACCTGATGCCTG 389
Query 519 GATTGATGTGGTTGAGAGAGTCTCTGACGATAACAACAAGACGTTAAAGCGAACTACAAA 578
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 390 GATTGATGTGGTTGAGAGAGTTTCTGACGATAACAACAAGACGCTAAAGCGAACTACAAA 449
Query 579 GACTAGCAGGTGCCTTAATTTGGGTTCCTACAATTATCTTGGATTTGGTTCTTTCGATGA 638
|||||| |||||||||||| |||| ||||||||||||||||||||||||||||| |||||
Sbjct 450 GACTAGTAGGTGCCTTAATCTGGGGTCCTACAATTATCTTGGATTTGGTTCTTTTGATGA 509
Query 639 ATATTGCACGCCTCGTGTCATTGAGTCTCTGAAGAAATTTTCAGCAAGTACATGTAGCTC 698
|||||| ||||||||||| ||||||||| |||||||||||||||| ||||||||||||||
Sbjct 510 ATATTGTACGCCTCGTGTTATTGAGTCTTTGAAGAAATTTTCAGCTAGTACATGTAGCTC 569
Query 699 TCGCGTTGATGCAGGAACTACATCTGTGCATGCAGAACTTGAGGATTGTGTTGCTAAATA 758
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 570 TCGCGTTGATGCAGGAACTACATCTGTGCATGCAGAACTTGAGGAATGTGTTGCTAAATA 629
Query 759 TGTCGGACAACCTGCTGCTGTTATTTTTGGCATGGGTTATGCAACAAACTCGGCTATCAT 818
|||||||||||||||||||||| | ||||||||||| |||||||||||||||||||| ||
Sbjct 630 TGTCGGACAACCTGCTGCTGTTGTCTTTGGCATGGGCTATGCAACAAACTCGGCTATTAT 689
Query 819 TCCCGTCTTGATTGGAAAGGGAGGGTTGATAATAAGCGATTCTTTGAACCATACTTCGAT 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 690 TCCCGTCTTGATTGGAAAGGGAGGGTTGATAATAAGCGATTCTTTGAACCATACTTCAAT 749
Query 879 TGTCAACGGCGCTCGAGGTTCAGGAGCTACTATCCGTGTTTTCCAACACAACACACCTGG 938
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 TGTCAACGGCGCTCGTGGTTCAGGAGCTACTATCCGTGTTTTCCAACACAACACACCTGC 809
Query 939 TCATCTGGAAAAAGTATTGAAAGAACAAATCGCCGAGGGACAACCCAGGACGCATAGACC 998
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 810 TCATCTGGAAAAAGTATTGAAAGAACAAATCGCTGAGGGACAACCCAGGACGCATAGACC 869
Query 999 GTGGAAGAAAATTATTGTTGTTGTTGAGGGTATTTACAGCATGGAAGGGGAAATTTGTCA 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 GTGGAAGAAAATTATTGTTGTTGTTGAGGGTATTTACAGCATGGAAGGGGAAATTTGTCA 929
Query 1059 TCTGCCCGAGATTGTTTCAATATGCAAGAAGTATAAGGCATATGTTTACTTGGACGAAGC 1118
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 TCTGCCCGAGATTGTCTCAATATGCAAGAAGTATAAGGCATATGTTTACTTGGACGAAGC 989
Query 1119 TCACAGCATTGGAGCAATTGGCAAGACAGGAAGAGGTGTTTGTGAACTCCTTGGAGTTGA 1178
||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 990 TCACAGCATTGGAGCAATTGGCAAGACAGGAAGGGGTGTTTGTGAACTCCTGGGGGTTGA 1049
Query 1179 CACTTCTGATGTGGACATAATGATGGGAACTTTCACGAAATCTTTTGGGTCTTGTGGTGG 1238
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 CACTGCTGATGTGGACATAATGATGGGAACTTTCACGAAATCTTTTGGGTCTTGTGGTGG 1109
Query 1239 CTATATTGCGGGATCAAAGGACCTCATCCAATATTTGAAGCACCAATGCCCGGCTCACCT 1298
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 CTATATTGCCGGATCAAAGGACCTCATCCAATATTTGAAGCACCAATGCCCGGCTCACCT 1169
Query 1299 TTACGCCACATCAATTTCAACTCCTTCCGCGACACAAATCATATCGGCGATAAAGGTTAT 1358
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 TTACGCAACGTCAATTTCAACTCCTTCCGCGACACAAATCATATCGGCGATAAAGGTTAT 1229
Query 1359 CCTTGGAGAGGATGGTTCAAACAGAGGGGCACAAAAGTTAGCAAGAATAAGGGAGAACAG 1418
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 CCTTGGAGAGGACGGTTCAAACAGAGGGGCACAAAAGTTAGCAAGAATAAGGGAGAACAG 1289
Query 1419 CAACTTTTTCAGGGCTGAGTTGCAGAAGATGGGGTTTGAAGTTCTTGGAGACAATGATTC 1478
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1290 CAACTTTTTCAGGGCTGAGTTGCAGAAGATGGGGTTTGAGGTTCTTGGAGACAATGATTC 1349
Query 1479 ACCAGTCATGCCAATAATGCTTTACAATCCAGCAAAAATTCCAGCATTCTCAAGGGAATG 1538
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1350 CCCAGTCATGCCAATAATGCTTTACAATCCAGCAAAAATTCCAGCCTTCTCAAGGGAATG 1409
Query 1539 TTTGCGAGAAAACTTGGCGGTGGTGGTCGTCGGTTTCCCAGCTACACCCCTATTGCTAGC 1598
|||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 1410 TTTGCGAGAAAACTTGGCAGTTGTGGTCGTCGGTTTCCCAGCTACACCGCTATTGCTAGC 1469
Query 1599 CAGGGCTCGTATTTGCATATCCGCATCTCACTCAAGAGAAGATCTTATAAAAGCCCTACA 1658
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1470 CAGGGCTCGTATTTGCATATCCGCATCTCACTCAAGAGAAGATCTTATTAAAGCCCTACA 1529
Query 1659 GGTTATAAGCAAAGCAGGTGACCTTACCGGGATCAAATATTTTCCGGCAGCTCCAAAAAA 1718
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1530 GGTTATAAGCAAAGCAGGTGACCTTACCGGGATCAAATATTTTCCGGCTGCTCCAAAGAA 1589
Query 1719 GCAAGAAGTAGAGAAAAATGGCATCAAATTGGATTAAACCCGTAAGGCAACAGTTTCTTT 1778
|||||||||||||||||||||||||||||||||||||| ||| || ||| ||||||||||
Sbjct 1590 GCAAGAAGTAGAGAAAAATGGCATCAAATTGGATTAAAACCGCAATGCATCAGTTTCTTT 1649
Query 1779 CCAAGAGATGTTTGGCTAGCAATTAGC-TGTAGTGTACAATTATC-TCGCTGTTCGTCTT 1836
||||||||||||||| ||||||||||| | |||| ||||||| || ||||||||||||||
Sbjct 1650 CCAAGAGATGTTTGGTTAGCAATTAGCAT-TAGTATACAATT-TCCTCGCTGTTCGTCTT 1707
Query 1837 TGTCTTGTCGTGAAACATGTGATTGTTGTCATTCTTCTCTCTTTATTATTTTT--A-TTG 1893
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |||
Sbjct 1708 TGTCTTGTCGTGAAACATGTGATTGTTGTCATTCTTCTTTCTTTATTTTTTTTTTAATTG 1767
Query 1894 TTTTTGTCAGAGTTAATAATTGT 1916
||||||||||||||||| ||||
Sbjct 1768 GTTTTGTCAGAGTTAATA-TTGT 1789
Score = 76.8 bits (41), Expect = 7e-13
Identities = 45/47 (96%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 2030 GAATTGTTTTGTTTTGGTCTTCCAGACCACGAATGTGCTAGCAGAAG 2076
|||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1829 GAATTGTTTTGTTTTGGTCTTCCAGACCACGAATATGCCAGCAGAAG 1875
> Ahg489227 jgi|Araly1|489227|fgenesh2_kg.6__2361__AT5G23670.1
Length=1905
Score = 1664 bits (901), Expect = 0.0
Identities = 1299/1490 (87%), Gaps = 32/1490 (2%)
Strand=Plus/Plus
Query 280 GAAACAATGATTACGATCCCATACCTTACCGCTGTATCAACGTATTTCAGCTACGGCTTG 339
|||| |||||| |||||||| || || ||||||||||| || || ||||||||||| |||
Sbjct 219 GAAAAAATGATAACGATCCCTTATCTAACCGCTGTATCGACCTACTTCAGCTACGGATTG 278
Query 340 CT-TTTCGCGTTTGGTCAGCTTCGCGATTAC-TCTCGCCTAATC-TTCGATTGGTGGCGC 396
|| ||| || ||||| ||||| || |||| | || |||| || || |||||||||| |
Sbjct 279 CTCTTT-GCTTTTGGCCAGCTCCGTGATTTCTTC-CGCCGCTTCATT-GATTGGTGGCTC 335
Query 397 ACCAACAATCTCCAGGGATACGCTCCGATCTGCTTGGCGCATGAGGATTTCTACATCCGA 456
|| | |||||||||||||||||| |||||||| |||| |||||||||||| || || |
Sbjct 336 ACTAGCAATCTCCAGGGATACGCGCCGATCTGTTTGGGGCATGAGGATTTTTATATTAGG 395
Query 457 CGATTGTATCATCGGATTCAGGACTGTTTTGGACGTCCCATTTCAAGTGCACCTGATGCT 516
||||||||||||||||||||||| ||||||| ||| || || || |||||||||||||||
Sbjct 396 CGATTGTATCATCGGATTCAGGATTGTTTTGAACGACCTATATCGAGTGCACCTGATGCT 455
Query 517 TGGATTGATGTGGTTGAGAGAGT-CTCTGACGATAACAACAAGACG-TTAAAGCGAACTA 574
||| ||||||| || ||| | | |||| | ||||||||||||||| || |||||||| |
Sbjct 456 TGGTTTGATGTCGTCGAGCG-TTACTCTAATGATAACAACAAGACGCTT-AAGCGAACAA 513
Query 575 CAAAGACTAGCAGGTGCCTTAATTTGGGTTCCTACAATTATCTTGGATTTGGTTCTTTCG 634
||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |
Sbjct 514 CAAAGACTAGCAGGTGCCTCAATTTGGGGTCCTACAATTATCTTGGGTTTGGTTCTTTTG 573
Query 635 ATGAATATTGCACGCCTCGTGTCATTGAGT-CTCTGAAGAAATTTTCAGCAAGTACATGT 693
|||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 574 ATGAATATTGCACGCCTCGTGTTATTGAGTCCT-TGAAGAAATTTTCAGCAAGTACATGT 632
Query 694 AGCTCTCGCGTTGATGCAGGAACTACATCTGTGCATGCAGAACTTGAGGATTGTGTTGCT 753
|||||||| || ||||||||||||||||| |||||||||||||||||||| |||||| ||
Sbjct 633 AGCTCTCGTGTCGATGCAGGAACTACATCAGTGCATGCAGAACTTGAGGAATGTGTTACT 692
Query 754 AAATATGTCGGACAA-CCTGCTGCTGTTATTTTTGGCATGGGTTATGCAACAAACTCGGC 812
| | ||| ||| || |||||||||||| ||||||||||||| |||||||||||||| ||
Sbjct 693 AGGTTTGTTGGA-AAGCCTGCTGCTGTTGTTTTTGGCATGGGCTATGCAACAAACTCAGC 751
Query 813 TATCATTCCCGTCTTGATTGGAAAGGGAGGGTTGATAATAAGCGATTCTTTGAACCATAC 872
||||||||| ||| |||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 752 TATCATTCCAGTCCTGATTGGAAAGGGAGGGTTGATAATAAGTGATTCCTTGAACCATAG 811
Query 873 TTCGATTGTCAACGGCGCTCGAGGTTCAGGAGCTACTATCCGTGTTTTCCAACACAACAC 932
|||||||||||| || ||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 812 TTCGATTGTCAATGGTGCTCGAGGTTCAGGAGCCACTATCCGTGTTTTCCAGCATAACAC 871
Query 933 ACCTGGTCATCTGGAAAAAGTATTGAAAGAACAAATCGCCGAGGGACAACCCAGGACGCA 992
|||| ||| ||||| ||| |||| ||||||||| || || || ||||| ||||| ||
Sbjct 872 ACCTTCCCATTTGGAACGAGTTTTGAGAGAACAAATTGCAGAAGGTCAACCTAGGACACA 931
Query 993 TAGACCGTGGAAGAAAATTATTGTTGTTGTTGAGGGTATTTACAGCATGGAAGGGGAAAT 1052
| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 932 TCGACCATGGAAGAAAATTATTGTTGTTGTTGAAGGTATTTACAGCATGGAAGGGGAGAT 991
Query 1053 TTGTCATCTGCCCGA-GATTGTTTCAATATGCAAGAAGTATAAGGCATATGTTTACTTGG 1111
||||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||
Sbjct 992 TTGTCATCTGCCCGAAG-TTGTCGCCATATGCAAGAAGTATAAGGCATATGTTTACTTGG 1050
Query 1112 ACGAAGCTCACAGCATTGGAGCAATTGGC-AAGACAGGAAGAGGTGT-T-TGTGAACTCC 1168
| || |||||||||||||| |||||||| || ||||||| ||| || | ||||||||||
Sbjct 1051 ATGAGGCTCACAGCATTGGGGCAATTGGTGAA-ACAGGAA-AGG-GTATCTGTGAACTCC 1107
Query 1169 TTGGAGTTGACACTTCTGATGTGGACATAATGATGGGAACTTTCACGAAATCTTTTGGGT 1228
| ||||||||||| ||||||||||| ||||||||||||| ||||| |||||||||||||
Sbjct 1108 TGGGAGTTGACACAGCTGATGTGGACGTAATGATGGGAACCTTCACAAAATCTTTTGGGT 1167
Query 1229 CTTGTGGTGGCTATATTGCGGGATCAAAGGACCTCATCCAATATTTGAAGCACCAATGCC 1288
||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||
Sbjct 1168 CTTGTGGTGGCTATATTGCTGGATCTAAGGAGCTCATCCAATATTTGAAGCATCAATGCC 1227
Query 1289 CGGCTCACCTTTACGCCACATCAATTTCAACTCCTTCCGCGACA-CAAATCATATCGGCG 1347
|||||||||||||||| ||||| || ||||||||||||| ||| |||||||| || ||
Sbjct 1228 CGGCTCACCTTTACGCAACATCCATACCAACTCCTTCCGC-ACAACAAATCATTTCTGCC 1286
Query 1348 AT-AAAGGTTATCCTTGGAGAGGATGGTTCAAACAGAGGGGCACAAAAGTTAGCAAGAAT 1406
|| |||| |||| || |||||||||||||||||| |||| ||||||||| | ||||||||
Sbjct 1287 ATTAAAG-TTATTCTGGGAGAGGATGGTTCAAACCGAGGAGCACAAAAGCTGGCAAGAAT 1345
Query 1407 AAGGGAGAACAGCAACTTTTTCAGGGCTGAGTTGCAGAAGATGGGGTTTGAAGTTCTTGG 1466
| | |||||||||||||||||| |||| ||| ||||||||||||| ||||| || |||||
Sbjct 1346 ACGTGAGAACAGCAACTTTTTCCGGGCAGAGCTGCAGAAGATGGGATTTGAGGTACTTGG 1405
Query 1467 AGACAATGATTCACCAGTCATGCCAATAATGCTTTACAATCCAGCAAAAATTCCAGCATT 1526
|||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||| ||
Sbjct 1406 AGACAATGATTCCCCAGTCATGCCAATAATGCTATACAACCCAGCAAAAATCCCAGCTTT 1465
Query 1527 CTCAAGGGAATGTTTGCGAGAAAACTTGGCGGTGGTGGTCGTCGGTTTCCCAGCTACACC 1586
|||||| |||||| ||||| |||| |||| ||||||||||| |||||||||||||||||
Sbjct 1466 CTCAAGAGAATGTCTGCGACAAAAAGTGGCAGTGGTGGTCGTGGGTTTCCCAGCTACACC 1525
Query 1587 CCTATTGCTAGCCAGGGCTCGTATTTGCATATCCGCATCTCACTCAAGAGAAGATCTTAT 1646
||| |||| || ||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1526 TCTACTGCTGGCTAGGGCACGTATTTGCATTTCCGCATCTCATTCAAGAGAAGATCTTAT 1585
Query 1647 AAAAGCCCTACA-GGTTATAAGCAAAGCAGGTGACCTTACCGGGATCAAATATTTTCCGG 1705
|| |||||| || |||||||||||||| ||||||||||| ||| ||||||||||| ||||
Sbjct 1586 AAGAGCCCT-CAAGGTTATAAGCAAAGTAGGTGACCTTAGCGGAATCAAATATTTCCCGG 1644
Query 1706 CAGCTCCAAAAAAGCA-AGAAGTAGAGAAAAA-TGGCATCAAATTGGATT 1753
||| || | ||| | |||| || ||||| || |||||| |||||||
Sbjct 1645 CAGAGCCGAGGAAG-ATAGAAC-AGTCAAAAAATGACATCAAGTTGGATT 1692
> Ahg485233 jgi|Araly1|485233|fgenesh2_kg.5__1225__AT3G48790.1
Length=1026
Score = 632 bits (342), Expect = 3e-180
Identities = 407/439 (93%), Gaps = 2/439 (0%)
Strand=Plus/Plus
Query 948 AAAAGTATTGAAAGAACAAATCGCCGAGGGACAACCCAGGACGCATAGACCGTGGAAGAA 1007
|||||| ||||||||||||||||| ||||||||||| ||||| || |||| |||||||||
Sbjct 216 AAAAGTTTTGAAAGAACAAATCGCTGAGGGACAACCAAGGACACACAGACTGTGGAAGAA 275
Query 1008 AATTATTGTTGTTGTTGAGGGTATTTACAGCATGGAAGGGGAAATTTGTCATCTGCCCGA 1067
||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 276 AATCATCGTTGTTGTTGAAGGTATTTACAGCATGGAAGGGGAAATCTGTCATCTGCCGGA 335
Query 1068 GATTGTTTCAATATGCAAGAAGTATAAGGCATATGTTTACTTGGACGAAGCTCACAGCAT 1127
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 336 GATTGTCTCAATATGCAAGAAGTATAAGGCATATGTTTACTTGGATGAAGCTCACAGCAT 395
Query 1128 TGGAGCAATTGGCAAGACAGGAAGAGGTGTTTGTGAACTCCTTGGAGTTGACACTTCTGA 1187
|||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||
Sbjct 396 TGGAGCAATTGGCAAGACAGGAAGAGGTGTTTGTGAACTCCTGGGGGTTGACACTTGTGA 455
Query 1188 TGTGGACATAATGATGGGAACTTTCACGAAATCTTTTGGGTCTTGTGGTGGCTATATTGC 1247
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 456 TGTGGACATAATGATGGGAACTTTCACGAAATCTTTCGGGTCTTGTGGTGGCTATATTGC 515
Query 1248 GGGATCAAAGGACCTCATCCAATATTTGAAGCACCAATGCCCGGCTCACCTTTACGCCAC 1307
||||| |||||||||||||||||||||||| |||| ||||| |||||||||||||| ||
Sbjct 516 CGGATCCAAGGACCTCATCCAATATTTGAAGTACCATTGCCCTGCTCACCTTTACGCAAC 575
Query 1308 ATCAATTTCAACTCCTTCCGCGACA-CAAATCATATCGGCGATAAAGGTTATCCTTGGAG 1366
|||||||||||||||| | || ||| ||| ||||||||| ||||| |||||||||||||
Sbjct 576 ATCAATTTCAACTCCTGCTGC-ACAACAAGTCATATCGGTTATAAAAGTTATCCTTGGAG 634
Query 1367 AGGATGGTTCAAACAGAGG 1385
|||||| ||||||||||||
Sbjct 635 AGGATGCTTCAAACAGAGG 653
Score = 322 bits (174), Expect = 8e-87
Identities = 234/262 (89%), Gaps = 7/262 (3%)
Strand=Plus/Plus
Query 1483 GTCATGCCAATAATGCTTTACAATCCAGCAAAAATTC-CAGCATTCTCAAGGGAATGTTT 1541
||||||||||||||||||||||||||||| |||| || |||| |||||||||| ||| ||
Sbjct 740 GTCATGCCAATAATGCTTTACAATCCAGC-AAAA-TCGCAGCCTTCTCAAGGGCATGGTT 797
Query 1542 GCGAGAAAACTTGGCGGTGGTGGTCGTCGGTTTCCCAGCTACACCCCTATTGCTAGCCAG 1601
|| |||||||||||| || ||||| ||| |||||||||||| ||| ||||||||||||||
Sbjct 798 GCAAGAAAACTTGGCAGTCGTGGTAGTCAGTTTCCCAGCTATACCTCTATTGCTAGCCAG 857
Query 1602 GGCTCGTATTTGCATATCCGCATCTCACTCAAGAGAAGATCTTATAAAAGCCCT-ACAGG 1660
||||||| |||||||||||| |||||||| |||||||||||||| |||||||| | |||
Sbjct 858 GGCTCGTTTTTGCATATCCGTATCTCACTTGAGAGAAGATCTTATTAAAGCCCTGA-AGG 916
Query 1661 TTATAAGCAAAGCAGGTGACCTTACCGGGATCAAATATTTTCCGGCAGCTCCAAAAAAGC 1720
||||||||| || |||||||||||| ||||||| ||||||| ||||||||||||| ||||
Sbjct 917 TTATAAGCAGAGTAGGTGACCTTACAGGGATCATATATTTTACGGCAGCTCCAAAGAAGC 976
Query 1721 AAGAAGTA-GAGAAAAATGGCA 1741
|||||| | |||||||||||||
Sbjct 977 AAGAAG-ACGAGAAAAATGGCA 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91188046530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5