BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48790.1
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485232 jgi|Araly1|485232|fgenesh2_kg.5__1224__AT3G48780.1 1225 0.0
Ahg489227 jgi|Araly1|489227|fgenesh2_kg.6__2361__AT5G23670.1 889 0.0
Ahg485233 jgi|Araly1|485233|fgenesh2_kg.5__1225__AT3G48790.1 665 0.0
> Ahg485232 jgi|Araly1|485232|fgenesh2_kg.5__1224__AT3G48780.1
Length=1875
Score = 1225 bits (663), Expect = 0.0
Identities = 918/1037 (89%), Gaps = 34/1037 (3%)
Strand=Plus/Plus
Query 17 CAGGAACTACAGCTGTGCATGGAGAACTTGAGGAATGTGTTGCTAAATTTGTGGGAAAAC 76
||||||||||| ||||||||| |||||||||||||||||||||||||| ||| ||| |||
Sbjct 581 CAGGAACTACATCTGTGCATGCAGAACTTGAGGAATGTGTTGCTAAATATGTCGGACAAC 640
Query 77 CTGCTGCTGTTGTTTTTGGCATGGGCTACT-TAACAAACTCGGCTATCATTTCTGTCTTG 135
||||||||||||| |||||||||||||| | ||||||||||||||| ||| | ||||||
Sbjct 641 CTGCTGCTGTTGTCTTTGGCATGGGCTA-TGCAACAAACTCGGCTATTATTCCCGTCTTG 699
Query 136 ATTGGCAAGGGAGGGTTGATAATAAGTGATTCTTTGAACCATACTTCAATTATCAATGGT 195
||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| ||
Sbjct 700 ATTGGAAAGGGAGGGTTGATAATAAGCGATTCTTTGAACCATACTTCAATTGTCAACGGC 759
Query 196 GCTCGAGGTTCAGGAGCCACTATCCGCGTTTT----C-CAACACA-------A-C----- 237
||||| ||||||||||| |||||||| ||||| | ||||||| | |
Sbjct 760 GCTCGTGGTTCAGGAGCTACTATCCGTGTTTTCCAACACAACACACCTGCTCATCTGGAA 819
Query 238 --A-TATTGAAAGAACATATCATTGAGGGACAACCAAGGACACACAGACCGTGGAAGAAA 294
| ||||||||||||| ||| |||||||||||| ||||| || |||||||||||||||
Sbjct 820 AAAGTATTGAAAGAACAAATCGCTGAGGGACAACCCAGGACGCATAGACCGTGGAAGAAA 879
Query 295 ATTATCGTTGTTGTTGAAGGTATTTATAGCATGGAAGGGGAAATCTGTGATCTACCGGAG 354
||||| ||||||||||| |||||||| ||||||||||||||||| ||| |||| || |||
Sbjct 880 ATTATTGTTGTTGTTGAGGGTATTTACAGCATGGAAGGGGAAATTTGTCATCTGCCCGAG 939
Query 355 ATTGTTTCAGTATGC-AGTGAGTATAAGGCATATGTTTATTTGGACGAAGCTCATAGCAT 413
||||| ||| ||||| || ||||||||||||||||||| |||||||||||||| |||||
Sbjct 940 ATTGTCTCAATATGCAAG-AAGTATAAGGCATATGTTTACTTGGACGAAGCTCACAGCAT 998
Query 414 TGGAGCAATTGGCAAAACAGGACGAGGTGTTTGTGAACTCCTAGGAGTTGACACTACTGA 473
||||||||||||||| |||||| | ||||||||||||||||| || ||||||||| ||||
Sbjct 999 TGGAGCAATTGGCAAGACAGGAAGGGGTGTTTGTGAACTCCTGGGGGTTGACACTGCTGA 1058
Query 474 AGTGGACATTATGATGGGCACTTTCACGAAATCTCTCGGGTCTTGTGGTGGCTACATTGC 533
|||||||| |||||||| ||||||||||||||| | ||||||||||||||||| |||||
Sbjct 1059 TGTGGACATAATGATGGGAACTTTCACGAAATCTTTTGGGTCTTGTGGTGGCTATATTGC 1118
Query 534 CGGATCCAAGGACCTTGTCCAATATTTGAAGCAACATTACCCTGCTCACCTTTACGCAAC 593
|||||| |||||||| |||||||||||||||| || | ||| |||||||||||||||||
Sbjct 1119 CGGATCAAAGGACCTCATCCAATATTTGAAGCACCAATGCCCGGCTCACCTTTACGCAAC 1178
Query 594 ATCAATTTCAACTCCTGCTGC-ACAACAAGTCATATCGGCCATAAAAGTCATCTTTGGAG 652
||||||||||||||| | || || |||| |||||||||| ||||| || ||| ||||||
Sbjct 1179 GTCAATTTCAACTCCTTCCGCGAC-ACAAATCATATCGGCGATAAAGGTTATCCTTGGAG 1237
Query 653 TGGACGGTTCAAACAGAGGGGAACTAAAGTTAGCAAGAATAAGGGAGAACAGCAACTTTT 712
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1238 AGGACGGTTCAAACAGAGGGGCACAAAAGTTAGCAAGAATAAGGGAGAACAGCAACTTTT 1297
Query 713 TCAGGGCTGAGTTGCAGAAGATGGGGTTCAAGGTCCTTGGAGTTTATGATTCCCCAATCA 772
|||||||||||||||||||||||||||| |||| ||||||| ||||||||||| |||
Sbjct 1298 TCAGGGCTGAGTTGCAGAAGATGGGGTTTGAGGTTCTTGGAGACAATGATTCCCCAGTCA 1357
Query 773 TGCCAATAATGCTTTACAATCCAGCAAAAAT-CGCAGCCTTCTCAAGGGAATGTTTGCGA 831
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1358 TGCCAATAATGCTTTACAATCCAGCAAAAATTC-CAGCCTTCTCAAGGGAATGTTTGCGA 1416
Query 832 GAAAACTTGGCAATCGTGGTAGTCAGTTTCCCACCTATACCTCTATTGCTAGCCAGGGCT 891
|||||||||||| | ||||| ||| |||||||| ||| ||| ||||||||||||||||||
Sbjct 1417 GAAAACTTGGCAGTTGTGGTCGTCGGTTTCCCAGCTACACCGCTATTGCTAGCCAGGGCT 1476
Query 892 CGTATTTGCA-ATTCCGCATCTCACTTAAGAGAAGATCTTATTAAAGCCCTGCAGGTTAT 950
|||||||||| || |||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1477 CGTATTTGCATAT-CCGCATCTCACTCAAGAGAAGATCTTATTAAAGCCCTACAGGTTAT 1535
Query 951 AAGCAGAGCAGGTGACCTTACCGGGATCAAATATTTTACGGCAGCTCCAAAGAAGCAAGA 1010
||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1536 AAGCAAAGCAGGTGACCTTACCGGGATCAAATATTTTCCGGCTGCTCCAAAGAAGCAAGA 1595
Query 1011 AG-AGA-AAAA-TGGCA 1024
|| ||| |||| |||||
Sbjct 1596 AGTAGAGAAAAATGGCA 1612
> Ahg489227 jgi|Araly1|489227|fgenesh2_kg.6__2361__AT5G23670.1
Length=1905
Score = 889 bits (481), Expect = 0.0
Identities = 842/1011 (83%), Gaps = 45/1011 (4%)
Strand=Plus/Plus
Query 17 CAGGAACTACAGCTGTGCATGGAGAACTTGAGGAATGTGTTGCTAAATTTGTGGGAAAAC 76
||||||||||| | ||||||| ||||||||||||||||||| ||| ||||| ||||| |
Sbjct 649 CAGGAACTACATCAGTGCATGCAGAACTTGAGGAATGTGTTACTAGGTTTGTTGGAAAGC 708
Query 77 CTGCTGCTGTTGTTTTTGGCATGGGCTACT-TAACAAACTCGGCTATCATTTCTGTCTTG 135
|||||||||||||||||||||||||||| | ||||||||| ||||||||| | ||| ||
Sbjct 709 CTGCTGCTGTTGTTTTTGGCATGGGCTA-TGCAACAAACTCAGCTATCATTCCAGTCCTG 767
Query 136 ATTGGCAAGGGAGGGTTGATAATAAGTGATTCTTTGAACCATACTTCAATTATCAATGGT 195
||||| |||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||
Sbjct 768 ATTGGAAAGGGAGGGTTGATAATAAGTGATTCCTTGAACCATAGTTCGATTGTCAATGGT 827
Query 196 GCTCGAGGTTCAGGAGCCACTATCCGCGTTTTCCAACACAACA----T----ATT-GAAA 246
|||||||||||||||||||||||||| |||||||| || |||| | ||| | ||
Sbjct 828 GCTCGAGGTTCAGGAGCCACTATCCGTGTTTTCCAGCATAACACACCTTCCCATTTGGAA 887
Query 247 -GA------ACATATCA--TTG-AG--GGACAACCAAGGACACA-CAGACCGTGGAAGAA 293
|| | | | || ||| || || ||||| |||||||| | |||| ||||||||
Sbjct 888 CGAGTTTTGAGAGAACAAATTGCAGAAGGTCAACCTAGGACACATC-GACCATGGAAGAA 946
Query 294 AATTATCGTTGTTGTTGAAGGTATTTATAGCATGGAAGGGGAAATCTGTGATCTACCGGA 353
|||||| |||||||||||||||||||| |||||||||||||| || ||| |||| || ||
Sbjct 947 AATTATTGTTGTTGTTGAAGGTATTTACAGCATGGAAGGGGAGATTTGTCATCTGCCCGA 1006
Query 354 -GATTGTTTC-AGTATGCAGTGA-GTATAAGGCATATGTTTATTTGGACGAAGCTCATAG 410
| |||| | | |||||| || |||||||||||||||||| ||||| || ||||| ||
Sbjct 1007 AG-TTGTCGCCA-TATGCAA-GAAGTATAAGGCATATGTTTACTTGGATGAGGCTCACAG 1063
Query 411 CATTGGAGCAATTGGCAAAACAGGACGAGGTGT-T-TGTGAACTCCTAGGAGTTGACACT 468
|||||| |||||||| |||||||| ||| || | ||||||||||| |||||||||||
Sbjct 1064 CATTGGGGCAATTGGTGAAACAGGAA-AGG-GTATCTGTGAACTCCTGGGAGTTGACAC- 1120
Query 469 A-CTGAAGTGGACATTATGATGGGCACTTTCACGAAATCTCTCGGGTCTTGTGGTGGCTA 527
| |||| |||||| | |||||||| || ||||| |||||| | |||||||||||||||||
Sbjct 1121 AGCTGATGTGGACGTAATGATGGGAACCTTCACAAAATCTTTTGGGTCTTGTGGTGGCTA 1180
Query 528 CATTGCCGGATCCAAGGACCTTGTCCAATATTTGAAGCAACATTACCCTGCTCACCTTTA 587
||||| ||||| ||||| || |||||||||||||||| || | ||| |||||||||||
Sbjct 1181 TATTGCTGGATCTAAGGAGCTCATCCAATATTTGAAGCATCAATGCCCGGCTCACCTTTA 1240
Query 588 CGCAACATCAATTTCAACTCCTGCTGCACAACAAGTCATATCGGCCATAAAAGTCATCTT 647
||||||||| || |||||||| | ||||||||| |||| || ||||| ||||| || |
Sbjct 1241 CGCAACATCCATACCAACTCCTTCCGCACAACAAATCATTTCTGCCATTAAAGTTAT-TC 1299
Query 648 TGG-AGTGGACGGTTCAAACAGAGGGGAACTAAAGTTAGCAAGAATAAGGGAGAACAGCA 706
||| || ||| ||||||||| |||| | || |||| | ||||||||| | ||||||||||
Sbjct 1300 TGGGAGAGGATGGTTCAAACCGAGGAGCACAAAAGCTGGCAAGAATACGTGAGAACAGCA 1359
Query 707 ACTTTTTCAGGGCTGAGTTGCAGAAGATGGGGTTCAAGGTCCTTGGAGTTTATGATTCCC 766
|||||||| |||| ||| ||||||||||||| || |||| ||||||| |||||||||
Sbjct 1360 ACTTTTTCCGGGCAGAGCTGCAGAAGATGGGATTTGAGGTACTTGGAGACAATGATTCCC 1419
Query 767 CAATCATGCCAATAATGCTTTACAATCCAGCAAAAATCGCAGCCTTCTCAAGGGAATGTT 826
|| |||||||||||||||| ||||| |||||||||||| |||| |||||||| ||||||
Sbjct 1420 CAGTCATGCCAATAATGCTATACAACCCAGCAAAAATCCCAGCTTTCTCAAGAGAATGTC 1479
Query 827 TGCGAGAAAACTTGGCAATCGTGGTAGTCAGTTTCCCACCTATACCTCTATTGCTAGCCA 886
||||| |||| ||||| | ||||| || |||||||| ||| ||||||| |||| || |
Sbjct 1480 TGCGACAAAAAGTGGCAGTGGTGGTCGTGGGTTTCCCAGCTACACCTCTACTGCTGGCTA 1539
Query 887 GGGCTCGTATTTGCAATTCCGCATCTCACTT-AAGAGAAGATCTTATTAA-AGCCCTGCA 944
|||| |||||||||| |||||||||||| || ||||||||||||||| || |||||| ||
Sbjct 1540 GGGCACGTATTTGCATTTCCGCATCTCA-TTCAAGAGAAGATCTTAT-AAGAGCCCT-CA 1596
Query 945 -GGTTATAAGCAGAGCAGGTGACCTTACCGGGATCAAATATTTTACGGCAG 994
||||||||||| || ||||||||||| ||| ||||||||||| ||||||
Sbjct 1597 AGGTTATAAGCAAAGTAGGTGACCTTAGCGGAATCAAATATTTCCCGGCAG 1647
> Ahg485233 jgi|Araly1|485233|fgenesh2_kg.5__1225__AT3G48790.1
Length=1026
Score = 665 bits (360), Expect = 0.0
Identities = 566/663 (85%), Gaps = 23/663 (3%)
Strand=Plus/Plus
Query 22 ACTACAGCTGTGCATGGAGAACTTGAGGAATGTGTTGCTAAATTTGTGGGAAAACCTGCT 81
|||||| |||| |||| |||||| ||||||||||||||||||||||||||| | ||||||
Sbjct 1 ACTACATCTGTCCATGAAGAACTCGAGGAATGTGTTGCTAAATTTGTGGGACAGCCTGCT 60
Query 82 GCTGTTGTTTTTGGCATGGGCTACTTAACAAACTCGGCTATCATTTCTGTCTTGATTGGC 141
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 61 GCTGTTGTTTTTGGCATGGGCTACCTAACAAACTCGGCTATCATTCCTGTCTTGATTGGA 120
Query 142 AAGGGAGGGTTGATAATAAGTGATTC--TTTGAACCATACTT--CAATTATC-AAT-GGT 195
||| | || || | | | | || | | || | | || || ||| ||| |
Sbjct 121 AAGTTACAATT-AT-CT-ATTCA-TCAGTAT-AAAAAGA-TTAAAAAAAATCAAATAATT 174
Query 196 -GCTCGAGGT-T-CAG-GAGCCACTATCCGCGTT-TTCCAACACAACA-TATTGAAAGAA 249
| || ||| | | | | | || ||||| ||| ||||| | || | | |||||||||
Sbjct 175 AACCCGCGGTGTACCGCGGGTCA-TATCCTAGTTAATCCAATA-AA-AGTTTTGAAAGAA 231
Query 250 CATATCATTGAGGGACAACCAAGGACACACAGACCGTGGAAGAAAATTATCGTTGTTGTT 309
|| ||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 232 CAAATCGCTGAGGGACAACCAAGGACACACAGACTGTGGAAGAAAATCATCGTTGTTGTT 291
Query 310 GAAGGTATTTATAGCATGGAAGGGGAAATCTGTGATCTACCGGAGATTGTTTCAGTATGC 369
||||||||||| ||||||||||||||||||||| |||| ||||||||||| ||| |||||
Sbjct 292 GAAGGTATTTACAGCATGGAAGGGGAAATCTGTCATCTGCCGGAGATTGTCTCAATATGC 351
Query 370 -AGTGAGTATAAGGCATATGTTTATTTGGACGAAGCTCATAGCATTGGAGCAATTGGCAA 428
|| ||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 352 AAG-AAGTATAAGGCATATGTTTACTTGGATGAAGCTCACAGCATTGGAGCAATTGGCAA 410
Query 429 AACAGGACGAGGTGTTTGTGAACTCCTAGGAGTTGACACTACTGAAGTGGACATTATGAT 488
|||||| ||||||||||||||||||| || ||||||||| ||| |||||||| |||||
Sbjct 411 GACAGGAAGAGGTGTTTGTGAACTCCTGGGGGTTGACACTTGTGATGTGGACATAATGAT 470
Query 489 GGGCACTTTCACGAAATCTCTCGGGTCTTGTGGTGGCTACATTGCCGGATCCAAGGACCT 548
||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 471 GGGAACTTTCACGAAATCTTTCGGGTCTTGTGGTGGCTATATTGCCGGATCCAAGGACCT 530
Query 549 TGTCCAATATTTGAAGCAACATTACCCTGCTCACCTTTACGCAACATCAATTTCAACTCC 608
|||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||
Sbjct 531 CATCCAATATTTGAAGTACCATTGCCCTGCTCACCTTTACGCAACATCAATTTCAACTCC 590
Query 609 TGCTGCACAACAAGTCATATCGGCCATAAAAGTCATCTTTGGAGTGGACGGTTCAAACAG 668
||||||||||||||||||||||| |||||||| ||| |||||| ||| | |||||||||
Sbjct 591 TGCTGCACAACAAGTCATATCGGTTATAAAAGTTATCCTTGGAGAGGATGCTTCAAACAG 650
Query 669 AGG 671
|||
Sbjct 651 AGG 653
Score = 427 bits (231), Expect = 7e-119
Identities = 270/288 (94%), Gaps = 6/288 (2%)
Strand=Plus/Plus
Query 770 TCATGCCAATAATGCTTTACAATCCAGCAAAAATCGCAGCCTTCTCAAGGGAATGTTTGC 829
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||
Sbjct 741 TCATGCCAATAATGCTTTACAATCCAGC-AAAATCGCAGCCTTCTCAAGGGCATGGTTGC 799
Query 830 GAGAAAACTTGGCAATCGTGGTAGTCAGTTTCCCACCTATACCTCTATTGCTAGCCAGGG 889
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 800 AAGAAAACTTGGCAGTCGTGGTAGTCAGTTTCCCAGCTATACCTCTATTGCTAGCCAGGG 859
Query 890 CTCGTATTTGCAAT-TCCGCATCTCACTTAAGAGAAGATCTTATTAAAGCCCTGCAGGTT 948
||||| ||||| || |||| ||||||||| |||||||||||||||||||||||| |||||
Sbjct 860 CTCGTTTTTGC-ATATCCGTATCTCACTTGAGAGAAGATCTTATTAAAGCCCTGAAGGTT 918
Query 949 ATAAGCAGAGCAGGTGACCTTACCGGGATCAAATATTTTACGGCAGCTCCAAAGAAGCAA 1008
|||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 919 ATAAGCAGAGTAGGTGACCTTACAGGGATCATATATTTTACGGCAGCTCCAAAGAAGCAA 978
Query 1009 G-A-A-GAGAAAAATGGCAATACTTCAAAGTTCAAACTAAGAATATAG 1053
| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 GAAGACGAGAAAAATGGCAATACTTCAAAGTTCAAACTAAGAATATAG 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39190358676
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5