BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48800.1
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485234 jgi|Araly1|485234|fgenesh2_kg.5__1226__AT3G48800.1 1290 0.0
Ahg941893 jgi|Araly1|941893|scaffold_602437.1 285 4e-76
> Ahg485234 jgi|Araly1|485234|fgenesh2_kg.5__1226__AT3G48800.1
Length=842
Score = 1290 bits (698), Expect = 0.0
Identities = 802/849 (94%), Gaps = 20/849 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGAATTGCAACCAGTGGATGGTCAGCAAACAAACGGCGGCGTTGTTACTATTCCT 60
|||||||| ||||||||||||||||||||||||||||||||||||||| || ||| |||
Sbjct 1 ATGGCGGAGTTGCAACCAGTGGATGGTCAGCAAACAAACGGCGGCGTTATTCCTACTCCG 60
Query 61 GCGTCAACTTCAGCCGAAGCGACGGCGATTGCAGCCGCGGGATCGAAACGATTGAGAAGA 120
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 61 GCGTCAACTTCAGCCGAAGCGACGGCGATTACACCCGCGGGATCGAAACGATTGAGAAGA 120
Query 121 CCAAGCGTTAGATTAGGCGAAATCGGCGGAGACCAGTACCAGCAGCAGCATCATCACCAC 180
|| || ||| |||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 121 CCTAGTGTTCGATTAGGCGAAATCGGCGGAGACCAGTA-C--CAGCAGCATCATCACCA- 176
Query 181 GCGGCGGCGGCGGCGTATGATTCACAAGGGA-GGAAATCGAAATGGACA-C--CGACGAC 236
| |||||||||||||||||||||||| ||| ||||||||||||||||| | |||||||
Sbjct 177 -C-GCGGCGGCGGCGTATGATTCACAA-GGACGGAAATCGAAATGGACACCGACGACGAC 233
Query 237 GACGAGTGGTAATAGAAAAGATACGAGTAAATCGTCGAGGACTCGAACCCTAACGAATTT 296
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 234 GACGAGTGGTAATAGAAAAGATATGAGTAAATCGTCGAGGACTCGAACCCTAACGAATTT 293
Query 297 GAGTTCTGGGTATGAGAATATAGGAACCCTAGATGATGAAAGAGAAGGAAATGTGGATTC 356
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 294 GAGTTCTGGGTATGAGAATATCGGAACCCTAGATGATGAAAGAGAAGCAAATGTGGATTC 353
Query 357 TTTTGGTGTTGGGAGTTGGCGGGTTAAGAAACGGGTCGGGTCAT---------CAGCAGC 407
|||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 354 TTTTGGTGTTGGGAGTTGGCGGGTTAAGAAACGGGTCGGGTCATCGACAACAACAGCAGC 413
Query 408 AGCGAAGAGAGTTAGATCCAATTGGGTATCGAAAGTTGGTGATGGGGATGAGAAAATTAG 467
|||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct 414 AGCGAAGAGAGTTAGATCTAATTGGGTATCGAAAATTGGGGATGGGGATGAGAAAATTAG 473
Query 468 TGGAGGGGAAGAATTGGAAGGTGGGTTTAGGGATTTTAGTAGAGAAGATTCTGAGAGTCC 527
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 474 TGGAGGGGAAGAATTGGAAGGTGGGTTTAGGGATTTTAGTAGAGAAGATTCAGAGAGTCC 533
Query 528 GATAAAGGAAGAGTCTTTGGATAGAGATGGTGGTGGGTTTTATGGTAGAAGAAGGTATGA 587
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 AATAAAGGAAGAGTCTTTGGATAGAGATGGTGGTGGGTTTTATGGTAGAAGAAGGTATGA 593
Query 588 GAGTAACAATAGTAGTGGCAACAGAGAATTCGAATCGAATATGGATGGAGGAGGAAAAGA 647
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||
Sbjct 594 GAGTAACAATAGTAGTGGAAACAGAGAATTTGAATCGAATATGGATGGAGGAGGAAGAGA 653
Query 648 AGGGGTGAAGATTTGGCTACAAGAGTTAGGGTTAGGGAGATATTGGCCTATGTTTGAGAT 707
||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 AGGTGTGAAGATATGGTTACAAGAGTTAGGGTTAGGGAGATATTGGCCTATGTTTGAGAT 713
Query 708 ACATGAGGTTGATGAAGAGGTTTTACCATTGTTGACATTGGAAGATCTTAAAGATATGGG 767
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 714 ACATGAGGTTGATGAAGAGGTTTTGCCATTGTTGACATTGGAAGATCTTAAAGATATGGG 773
Query 768 GATTAATGCTGTTGGATCGAGGAGGAAGATGTTTTGTGCTATTCAAAAGCTTGGTAGGGA 827
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 774 GATTAATGCTGTTGGGTCGAGGAGGAAGATGTTTTGTGCTATTCAGAAGCTTGGTAGGGA 833
Query 828 GTTCTCATG 836
|||||||||
Sbjct 834 GTTCTCATG 842
> Ahg941893 jgi|Araly1|941893|scaffold_602437.1
Length=913
Score = 285 bits (154), Expect = 4e-76
Identities = 191/209 (91%), Gaps = 1/209 (0%)
Strand=Plus/Plus
Query 629 TGGATGGAGGAGGAAAAGAAGGGGTGAAGATTTGGCTACAAGAGTTAGGGTTAGGGAGAT 688
|||| ||| ||||||||||||| |||||||| ||| ||||||||||||||||||||||||
Sbjct 685 TGGA-GGAAGAGGAAAAGAAGGAGTGAAGATATGGTTACAAGAGTTAGGGTTAGGGAGAT 743
Query 689 ATTGGCCTATGTTTGAGATACATGAGGTTGATGAAGAGGTTTTACCATTGTTGACATTGG 748
||||||| ||||||||||| ||||| ||||||||| | || |||||||||||||||||||
Sbjct 744 ATTGGCCAATGTTTGAGATGCATGAAGTTGATGAACAAGTGTTACCATTGTTGACATTGG 803
Query 749 AAGATCTTAAAGATATGGGGATTAATGCTGTTGGATCGAGGAGGAAGATGTTTTGTGCTA 808
| |||||||||||||||||||||||||||||||| || ||||||||||||| |||||| |
Sbjct 804 AGGATCTTAAAGATATGGGGATTAATGCTGTTGGGTCTAGGAGGAAGATGTATTGTGCAA 863
Query 809 TTCAAAAGCTTGGTAGGGAGTTCTCATGA 837
||||||||||||| ||||||||||| |||
Sbjct 864 TTCAAAAGCTTGGAAGGGAGTTCTCGTGA 892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30955808604
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5