BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48860.2
Length=2107
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485239 jgi|Araly1|485239|fgenesh2_kg.5__1231__AT3G48860.2 3086 0.0
Ahg489231 jgi|Araly1|489231|fgenesh2_kg.6__2365__AT5G23700.1 191 2e-47
> Ahg485239 jgi|Araly1|485239|fgenesh2_kg.5__1231__AT3G48860.2
Length=2050
Score = 3086 bits (1671), Expect = 0.0
Identities = 1927/2047 (94%), Gaps = 31/2047 (2%)
Strand=Plus/Plus
Query 2 TTTTCCCTTCCGTTTTCTCGAGAAAATCTACCTTTTTCCCCGAG-AAATTTCATTTTCTC 60
||||||||||||||||| ||||||||| || | ||||||||||| ||| | |||||||||
Sbjct 1 TTTTCCCTTCCGTTTTCGCGAGAAAATTTAGC-TTTTCCCCGAGAAAAATCCATTTTCTC 59
Query 61 TGGTTCACCTGCTTGTTGCTCGCTTAAATACAGCGATTTCATCCAACCAACAAGTACCTT 120
||||||| || ||| ||||||||||||||||||||||| |||||| | || |||| |||
Sbjct 60 TGGTTCATCTTCTTTTTGCTCGCTTAAATACAGCGATTGCATCCAGCTAATTAGTAACTT 119
Query 121 CACCAACACACTGATGGATCGGAGGAGGGCGGGTAGCCCAGTGTATGGTCGCCAGTGGAG 180
||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CACGAACTCTCTGATGGATCGGAGGAGGGCGGGTAGCCCAGTGTATGGTCGCCAGTGGAG 179
Query 181 CGAATCATCGAACAGTACGGAGGCAACATCACCGGCGATGTCTCCTGCTCACCGGAAACA 240
||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| ||
Sbjct 180 CGAATCATCGAACAGTACGGAAACGACATCGCCGGCGATGTCTCCTGCTCACCGGAAGCA 239
Query 241 GCTCGGTGGTATCGGAGGTTTCTCCACCGTTAAACGGACTCAGAACGTAGCTGCCAAAGC 300
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 240 GCTCGGTGGTATCGGAGGTTTCTCCACCGTCAAACGGACTCAGAACGTAGCTGCAAAAGC 299
Query 301 CGCGGCACAGCGATTAGCTAAGGTCATGGCCTTACAGAACAAAGACAACGGAGACGAAGA 360
|||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 300 GGCGGCACAACGATTGGCTAAGGTTATGGCCTTGCAGAACAAAGACAACGGAGACGAAGA 359
Query 361 TGATGAAGATGAAGATGAAGATCTAAGTCTCAGATTCGCATCTGCTTCTTTAAAACCTGC 420
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 360 TGATGAAGATGAAGATGAAGATCTAAGTCTCAGATTCGCATCTCCTTCTTTGAAACCTGC 419
Query 421 TCGTCATGCACCTTCTTCTATCTCCTCCACCGGAAGCAATAGCAGCAACGGAAATAATAA 480
||||||||||||||||||| | ||||| || ||||| ||||||||||||||||| | |||
Sbjct 420 TCGTCATGCACCTTCTTCTCTTTCCTCTACTGGAAGTAATAGCAGCAACGGAAACAGTAA 479
Query 481 TTTGCCGGCTGTTTCATTT-GCTCCCCGAACTAGATCGCCGTCTCCTGCGTTAGGCAGGA 539
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTTGCCGGCTGTTTC-TTTCGCTCCCCGAACTAGATCGCCGTCTCCTGCGTTAGGCAGGA 538
Query 540 ACTTCGCCGAGCAAGTACCTTCTTCAGTGCGGTCTGCTTCAGCCGGAAGGCCGTCAATGT 599
|||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 539 ACTTCGCCGAGCAAGT-GC--CTTCAGTGCGTTCTGCTTCAGCCGGAAGGCCGTCAATGT 595
Query 600 CTGCTAGATCTACGACTCCGACTCCGATTCCTAATCTAATGCCGCCTAGTAGGGTGTCGG 659
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CTGCTAGATCCACGACTCCGACTCCGATTCCTAATCTAATGCCGCCTAGTAGGGTGTCGG 655
Query 660 TGAAAACTCCGGTTTCTATTCCTCCACTTGATCCTCCAACTCGGAGCAGAGATAAAAGGT 719
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 656 TGAAAACTCCGGTTTCTATTCCTCCACTTGATCCTCCAACTAGGAGCAGAGATAAAAGGT 715
Query 720 TCTTTGCTGATGTACCATCAGTAAATTCAAAAGAAAAGGGTGATCAGCGGGAAGCTTCAG 779
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TTTTTGCTGATGTACCATCAGTAAATTCAAAAGAAAAGGGTGATCAGCGGGAAGCTTCAG 775
Query 780 CTCTTCGTGATGAACTGGATATGCTACAAGAGGAGAATGAGAATGTACTGGAGAAGCTTC 839
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CTCTCCGTGATGAACTGGATATGCTACAAGAGGAGAATGAGAATGTACTGGAGAAGCTTC 835
Query 840 GTCGTGCGGAAGAAAAAAGGGTGGAAGCAGAAGCTAGGGCTAAGGAGCTCGAGAAACAGG 899
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 836 GTCGTGCGGAAGAAAAAAGGGTGGAAGCAGAAGCTAGGGCTAAGGAGCTCGAAAAACAGG 895
Query 900 TTGCCTCTCTTGGAGAAGGAGTTTCCTTGGAGGCGAAATTGTTAAGCAGGAAAGAAGCAG 959
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 896 TTGCCTCTCTTGGAGAAGGAGTGTCCCTGGAGGCGAAATTGTTAAGCAGGAAAGAAGCAG 955
Query 960 CATTGCGTCAAAGAGAGGCTGCTCTAAATGTTGCTAAACaaaaaaaGAGTGGAAAGGATG 1019
| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 956 CGTTGCGTCAAAGAGAGGCTGCTCTAAATGCTGCTAAACAGAAAAAGAGTGGAAAGGATG 1015
Query 1020 AGGAAATTGTTTCCCTACGTTCGGAGCTTGAGAACTTGAAAGATGAGGCTACAACTGCTG 1079
| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1016 ATGAAATTGTTTCCCTACGTTCGGAACTTGAGAACTTGAAAGACGAGGCTACAACTGCTG 1075
Query 1080 CAGAACGGCTTCAAGAAGCAGAGTCTGAAGCGAAGTCTCTTCGCACAATGACTCAGAGGA 1139
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1076 CAGAACGGCTTCAAGAAGCAGAGTCTGAAGCAAAGTCTCTTCGCACAATGACTCAAAGGA 1135
Query 1140 TGATTTTAACACAGGATGAAATGGAAGAAGTAGTTCTGAAGAGATGCTGGCTTGCTCGGT 1199
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1136 TGATTTTAACACAGGACGAAATGGAAGAAGTAGTTCTGAAGAGATGCTGGCTTGCCCGGT 1195
Query 1200 ATTGGGGCTTGGCTGTGCAACATGGCATTTGTGCGGATATAGCACCATCCAGGCAAGAGC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1196 ATTGGGGCTTGGCTGTGCAACATGGCATTTGTGCGGATATAGCACCATCCAGGCATGAGC 1255
Query 1260 ACTGGTCAAAGTTGGCTCCTCTTCCATTTGAGCTCGTCACTTCAGCAGCACAGAAGGCGA 1319
|||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1256 ACTGGTCAGCGTTGGCTCCTCTTCCATTTGAGCTCGTCACCTCTGCAGCACAGAAGGCGA 1315
Query 1320 AGGAGTTATCTTGGGATAAAGGTGGGAATGATCGGAGTAAGGCGGCTAGAGATTTGAGTG 1379
|||||||| | || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1316 AGGAGTTA-------A-AA-GGTGGGAATGATCGGAGTAAGGCCGCTAGAGATTTGAGTG 1366
Query 1380 ATCTAACTGGAGAAGGAAATATTGAAAGTATGCTTTCAGTTGAGATGGGTTTGAGAGAGC 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 ATCTAACTGGAGAAGGAAATATTGAAAGTATGCTTTCAGTTGAGATGGGTTTGAGAGAGC 1426
Query 1440 TAGCATCATTAAAGGTGGAGGATGCTGTTGTGCTTATATTCGCCCAGCAGAGAAAGTTGA 1499
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1427 TAGCATCATTAAAGGTTGAGGATGCTGTTGTGCTTGTATTCGCCCAGCAGAGAAAACTGA 1486
Query 1500 GTTTGGTTCGCCACACTGTTTCCGACTCCAAAGGTCATGGAGAATCCAGATTTATCGATG 1559
|||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1487 GTTTGGTTCGTCAAACTGTTTCTGACTCCAAAGGTCATGGAGAATCCAGATTTATCGATG 1546
Query 1560 CATATGAACTGGGTGAAGCGGAACAAGAAGATGTTGCCTTTAAGCAGGCATGGCTGATGT 1619
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 CCTATGAACTGGGTGAAGCGGAACAAGAAGATGTTGCCTTTAAGCAGGCATGGCTGATGT 1606
Query 1620 ACTTCTGGGGAAGAGCTAAGTTGCACGGTGTGGAAGATGACATCGCAGAGGAACGTGTCC 1679
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 ACTTTTGGGGAAGAGCTAAGTTGCACGGTGTGGAAGATGACATCGCAGAGGAACGTGTCC 1666
Query 1680 AGTTATGGATCAGCCGTAGCAGTGGGAAATCTCAGACGACTTCTCATGATGCCTTGGATG 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 AGTTATGGATCAGCCGTAGCAGTGGGAAATCTCAGACGACTTCTCATGATGCCTTGGATG 1726
Query 1740 TGGAAAGAGGGTTGATAGAGCTACGAAAACTGGGAATAGAGCAACAGTTGTGGGAAGCTT 1799
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1727 TGGAAAGAGGGTTGATAGAGCTAAGGAAACTGGGAATAGAGCAACAGTTGTGGGAAGCTT 1786
Query 1800 CTCGACGAGAAATCGATCAGCTTCCCTCGCCTACTTCTTCGAATCACGATCTCGATGCTG 1859
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1787 CTCGAAGAGAAATCGATCAGCTTCCATCGCCTACTTCTTCGAATCACGATCTCGATGCTG 1846
Query 1860 ATTCATAGTAAAGTCTCTTCCTTTTCTTTGATAGAAGAAATTTTCGTTTTGTATATCTCT 1919
|||||||||||||||||||||| | ||||| ||||||||||||||| ||||||| | |
Sbjct 1847 ATTCATAGTAAAGTCTCTTCCTCT-CTTTGGGAGAAGAAATTTTCGTCCTGTATAT-T-T 1903
Query 1920 CGT--CATGTAAGTTTCACGAAGAATCTGTTGTGTCATTGTATTTTT-TATG--TTTTCC 1974
||| ||||||||||||||||||||||||| ||| |||||||||||| | | ||||
Sbjct 1904 CGTTTCATGTAAGTTTCACGAAGAATCTGT-GTGCCATTGTATTTTTCTTTCCCTTTTAG 1962
Query 1975 CTTTTCACACTTAAGTGTGTAAGCTTTTGGTATTCTTATTTTTGCAATCAATTCCAAAAA 2034
||||||||||| ||||||||||| | ||||||||||||||||||||| ||||||||
Sbjct 1963 -TTTTCACACTTGAGTGTGTAAGCA---G-TATTCTTATTTTTGCAATCAAGTCCAAAAA 2017
Query 2035 GTTTTGG 2041
||||||
Sbjct 2018 -TTTTGG 2023
> Ahg489231 jgi|Araly1|489231|fgenesh2_kg.6__2365__AT5G23700.1
Length=1674
Score = 191 bits (103), Expect = 2e-47
Identities = 217/271 (80%), Gaps = 12/271 (4%)
Strand=Plus/Plus
Query 143 AGGAGGGC-GGGTAGCCCAGTGTATGGTCGCCAGTGGAGCGA-ATCATCGAACAG-TACG 199
|||||||| ||| ||||||||||| ||||| || |||||| | |||||| ||| | ||||
Sbjct 10 AGGAGGGCTGGG-AGCCCAGTGTACGGTCGTCAATGGAGC-AGATCATCTAAC-GTTACG 66
Query 200 GAGGCAACATCACCGGCGATGTCTCCTGCTCACCGGAAACAGCTCGGTGGTATCGGAGGT 259
|| | | ||| ||| | | ||| |||||||||||||| || ||||| || | || ||
Sbjct 67 GAATCGAGATCGCCGTCCAAGTCACCTGCTCACCGGAATCAAATCGGTAGTGTTGGTGGC 126
Query 260 TTCTCCACCGTTAAACGGACTCAGAACGTAGCTGCCAAAGCCGCGGCACAGCGATTAGCT 319
|| ||||||||||||||||||||||||||||| ||||||| ||||| || || |||||
Sbjct 127 TTATCCACCGTTAAACGGACTCAGAACGTAGCCACCAAAGCGGCGGCTCAACGGTTAGCG 186
Query 320 AAGGTCATGGCCTTACAGAACAAAGACAACGGAGACGAAGATGATGAAGATGAAGATGAA 379
||||| ||||| ||||||||||||||||| | | | ||||| ||||| ||||| || ||
Sbjct 187 AAGGTTATGGCTTTACAGAACAAAGACAATG-A-A-GAAGACGATGATGATGACGACGAT 243
Query 380 GATCTAAGTCTCAGATTCGCATCTGCTTCTT 410
| | || | ||| ||||||| || ||||||
Sbjct 244 CA-CGAA-T-TCAAATTCGCACCTCCTTCTT 271
Score = 182 bits (98), Expect = 1e-44
Identities = 166/197 (84%), Gaps = 11/197 (6%)
Strand=Plus/Plus
Query 1372 TTTGAGTGATCTAACTGGAGAAGGAAATATTGAAAGTATGCTTTCAGTTGAGATGGGTTT 1431
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TTTAAGTGATCTAACTGGAGAAGGAAATATTGAAAGTATGCTTTCAGTTGAGATGGGTTT 1184
Query 1432 GAGAGAGCTAGCATCATTAAAGGTGGAGGATGCTGTTGTGCTTATATTCGCCCAGCAGAG 1491
||||||||||||||| |||||||| || ||||| ||| ||||| |||||||||| ||||
Sbjct 1185 GAGAGAGCTAGCATCCTTAAAGGTTGAAGATGCGGTTATGCTTGCATTCGCCCAGAAGAG 1244
Query 1492 AA-AGTTGAGTTTGGTTCGCCACACTGTTTCCGACTCCAAAGGTCATGGAGAA-TCCAGA 1549
|| | ||||| ||||| || | || | | |||||||| ||||||||| || |||
Sbjct 1245 AACACCA-AGTTTAGTTCGTCA-AG-GTAT---ATTCCAAAGGGCATGGAGAACTC-AGA 1297
Query 1550 TTTATCGATG-CATATG 1565
||| | || | ||||||
Sbjct 1298 TTTGTAGA-GACATATG 1313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79265799845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5