BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48880.1
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485242 jgi|Araly1|485242|fgenesh2_kg.5__1234__AT3G48880.2 1530 0.0
> Ahg485242 jgi|Araly1|485242|fgenesh2_kg.5__1234__AT3G48880.2
Length=1098
Score = 1530 bits (828), Expect = 0.0
Identities = 901/937 (96%), Gaps = 2/937 (0%)
Strand=Plus/Plus
Query 278 AAGAATGGAAGAAGAGTATGAGAGTCGTCGA-TTGAGGAGATGGGAAGAGTTGGACACTG 336
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 57 AAGAATGGAAGAAGAGTATGAGAGTCGTCGAGTT-AGGAGATGGGAAGAGTTGGACACTG 115
Query 337 ACATCTTAGTAAGAATTTTCCAGAAGTTTAGCGTCTTTGAGTTGACTTCGGGATTAGCTC 396
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 116 ACATCTTAGTAAGAATTTTCCAGAAGTTTAGCGTCTTTGAGTTGACTTCAGGATTAGCTC 175
Query 397 ATGTTTGTAGAGGATGGAGAGCTGCTTGTTGCGATCCGATTCTTTGGAAGACGGTGGATT 456
||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||
Sbjct 176 ATGTTTGTAGAGGATGGAGAGCTGCTTGTTGCGATCCGATTCTATGGAAGACTCTTGATT 235
Query 457 TGTCAAACATGAGATCTAGTTTCATCAAGATCCCATTAGAGCCTTATGTCTATGTGGAAC 516
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TGTCTCACATGAGATCTAGTTTCATCAAGATCCCATTAGAGCCTTATGTCTATGTGGAAC 295
Query 517 GCCGATCTGATGAGGCCCTAACCCGCATCCTGAAACTCTCCATGAACCTTAGCGGAGGAA 576
||||||||||||||||||| ||| | |||||||||||||||||||| ||||| |||||||
Sbjct 296 GCCGATCTGATGAGGCCCTGACCAGGATCCTGAAACTCTCCATGAATCTTAGTGGAGGAA 355
Query 577 GCACGAGGACCTTGATTTTTCATTTCAACTTGTTCTTGAGTGATGATCAGCTTACTTACA 636
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 ACACGAGGACCTTGATTTTTCATTTCAACTTGTTCTTGAGTGATGATCAGCTTACTTACA 415
Query 637 CCGCAGAAAGGTGTCCAGGGTTGAGACGGGTCGTCCTACCGGCTTGGAACAGAATAAAGA 696
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 416 CCGCAGAAAGGTGTCCAGGGTTGAGACGGGTGGTCCTACCGGCTTGGAACAGAATAAAGA 475
Query 697 AGACTGGTATATGCAAAGCGATAAGAATCTGGAAAGATCTAGAGTCACTAACAATGCCAA 756
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 476 AGACTGGTATATGCAAAGCGATAAGAATCTGGAAAGATCTCGAGTCACTAACAATGCCGA 535
Query 757 GCATCGCAAACCCGCCTTATCTCTTAACAGAAATTGCCAAGAACTGCAAGAATTTTAAAG 816
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 536 GCATCGCAAACCCGCCTTATCTCTTAACAGAAATCGCCAAGAACTGCAAGAATTTCAAAG 595
Query 817 AGCTGAAGATCATGGGTCCATTCGAGGTCTTCTTTGCAAACACGCTCATCACTTGCCTCC 876
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 596 AGCTGAAGATCATGGGTCCATTTGAGGTCTTCTTTGCAAACACGCTCATCACTTGCCTCC 655
Query 877 CAAACATCAAAACACTCAGCATCAGATGCTCGGCGATAAAGCGGGAAGCACTGATGAAAA 936
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 656 CAAACATCAAAACCCTCAGCATCAGATGCTCGGCGATAAAGCGGGAAGCACTCATGAAGA 715
Query 937 TCCTTGACGGATTACCAAGCCTTGAAGTGCTCAACATATCACACTCTCACCTAGTGGAGT 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TCCTTGACGGATTACCAAGCCTTGAAGTGCTCAACATATCACACTCTCACCTAGTGGAGT 775
Query 997 ACAGCGGTTGGCAGCCTCAGCAGAAGGTGATTGTTAGAGAGCTCGATAAGACGATAATGG 1056
||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 776 ACAGCGGTTGGCAACCGCAGCAGAAAGTGATTGTTAGAGAGCTGGATAAGACGATAATGG 835
Query 1057 AGAAAACAGCAAGGCTAAAGAAATTCTTGACTTGCATGGATCACAAGACGTGTGTGATGT 1116
|||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 836 AGAAAACAGCGAGGCTAAAGAAGTTCTTGACATGCATGGAGCACAAGACGTGTGTGATGT 895
Query 1117 GTCAGAGGACTGAAAACGATGAAGGGATTGTGAGATGGTACAAGTATGAGGAAGGAGACT 1176
||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 896 GTCAGAGGACTGAGAGTGATGAAGGGATTGTGAGATGGTATAAGTATGAGGAAGGAGACT 955
Query 1177 GGAAGGTTGATGAAGTGAGTTCTCTTCATCTTTGATG 1213
|||||||||||||||||||||||||||||||||||||
Sbjct 956 GGAAGGTTGATGAAGTGAGTTCTCTTCATCTTTGATG 992
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52031274670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5