BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48890.1
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485244 jgi|Araly1|485244|fgenesh2_kg.5__1236__AT3G48890.1 1482 0.0
> Ahg485244 jgi|Araly1|485244|fgenesh2_kg.5__1236__AT3G48890.1
Length=950
Score = 1482 bits (802), Expect = 0.0
Identities = 905/953 (95%), Gaps = 13/953 (1%)
Strand=Plus/Plus
Query 1 GAAAATTAAAACACAAAACGTTA--C-TCT-TCTCT--CTC-ATTCTCTTTCGCTTCTCG 53
||||||||||||||||||||||| | ||| ||||| ||| |||||||||||||||||
Sbjct 1 GAAAATTAAAACACAAAACGTTACTCTTCTCTCTCTCGCTCTCTTCTCTTTCGCTTCTCG 60
Query 54 ATAGCTTCTCAAATCATGGTTCAGCAAATATGGGAGACGTTGAAGGAAACAATCACAGCT 113
||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 61 ATAGC-TCTCAAATCATGGTTGTGCAAATATGGGAGACGTTGAAGGAAACCATCACAGCT 119
Query 114 TACACTGGACTTTCTCCAGCTGCGTTTTTCACCGTACTTGCTCTCGCTTTCGCCGTTTAC 173
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 TACACTGGACTTTCTCCAGCTGCGTTTTTCACCGTACTAGCTCTCGCTTTCGCCGTTTAC 179
Query 174 CAAGTCGTCTCCGGTTTCTTCGTTTCTCCTGAAGTTCACCGACCTCGTTCTTTGGAGGTT 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CAAGTCGTCTCCGGTTTCTTCGTTTCTCCTGAAGTTCACCGACCTCGTTCTTTGGAGGTT 239
Query 234 CAGCCTCAATCGGAGCCTCTTCCACCGCCGGTTCAGCTCGGAGAAATCACTGAGGAGGAG 293
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 240 CAGCCTCAATCGGAGCCTCTTCCGCCGCCGGTTCAGCTGGGAGAAATCACTGAGGAGGAG 299
Query 294 CTTAAGCTTTATGATGGCTCCGATTCTAAAAAGCCCCTTCTTATGGCGATCAAGGGCCAG 353
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 CTTAAGCTGTATGATGGCTCCGATTCTAAAAAGCCCCTTCTTATGGCGATCAAGGGTCAG 359
Query 354 ATCTATGATGTTTCTCAGAGCAGGATGTTTTATGGACCAGGTGGGCCATATGCTCTGTTT 413
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATCTATGATGTTTCCCAGAGCAGGATGTTTTATGGACCAGGTGGGCCATATGCTCTGTTT 419
Query 414 GCAGGGAAAGATGCAAGCCGAGCTCTGGCAAAGATGTCATTTGAGGACCAAGACTTGACT 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCAGGGAAAGATGCAAGCCGAGCTCTGGCAAAGATGTCATTTGAGGACCAAGACTTGACT 479
Query 474 GGAGACATCTCAGGTCTCGGTGCATTTGAGCTAGAGGCGTTACAAGACTGGGAGTACAAG 533
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 480 GGAGATATCTCAGGTCTCGGTGCATTTGAGCTAGAGGCGTTACAAGACTGGGAATACAAG 539
Query 534 TTCATGAGCAAGTATGTCAAAGTCGGAACCATTCAAAAGAAGGATGGAGAAGGCAAAGAA 593
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 540 TTCATGAGCAAGTATGTCAAAGTCGGCACCATTCAAAAGAAGGATGAAGAAGGCAAAGAA 599
Query 594 AGTTCAGAACCTTCCGAAGCAAAGACTGCCTCTGCGGAAGGTCTTTCTACAAACACTGGA 653
|||||||||||||| ||| ||||| || |||||||||||||||| |||||||||||||||
Sbjct 600 AGTTCAGAACCTTCTGAAACAAAGGCTACCTCTGCGGAAGGTCTGTCTACAAACACTGGA 659
Query 654 GAAGAAGCTTCAGCAATTACCCATGATGAAACTTCTAGAAGCACAGGCGAGAAAATCGCG 713
||||||||||| || ||||||||||||||||||||||||||| || |||||||||||||
Sbjct 660 GAAGAAGCTTCCGCGGTTACCCATGATGAAACTTCTAGAAGCATAGACGAGAAAATCGCG 719
Query 714 GAAACCACGGAGAAGAAAGATGTTGCAACTGATGATGATGATGCTGCAAAGGAGTAAAGT 773
||||||||||||||||| ||||| |||| ||||||||| |||||| ||||||||||||
Sbjct 720 GAAACCACGGAGAAGAAGGATGTCGCAA---ATGATGATGCTGCTGCGAAGGAGTAAAGT 776
Query 774 CAATGTAATGAGAGGCACAGTTTCTCTTGAGAAATTAGTGAGATTTTTCAGGGTTTAAGT 833
||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 777 CAATGTAATCAGAGGCACACTTTCTCTTGAGATATTAGTGAGATTTTTCAGGGTTTAAGT 836
Query 834 ATGAGTCGTATATAGCTCAATAAAAATGGTGACCTTGTGTGTACTTTTTGGATCTTGTAT 893
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 837 ATGAGTCGTATATAGCTCAATAAAAATGGTGACTTTGTTTGTACTTTTTGGATCTT--AT 894
Query 894 AATGACATCTAATTCTGGTTATGGAAGCTTCAAAATACATTATTTCTACAGTA 946
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 895 AATGACTTCTAATTCTGGTTATGGAAGCTTCAAATTACATTATTTCTACAGTA 947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36788614905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5