BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48900.2
Length=1932
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485245 jgi|Araly1|485245|fgenesh2_kg.5__1237__AT3G48900.2 2861 0.0
> Ahg485245 jgi|Araly1|485245|fgenesh2_kg.5__1237__AT3G48900.2
Length=1899
Score = 2861 bits (1549), Expect = 0.0
Identities = 1743/1836 (95%), Gaps = 16/1836 (1%)
Strand=Plus/Plus
Query 1 CTCGCTCGATCTCGAAGGTGAAGCTATGGGAGTGAAGTATCTTTGGGATGTCTTGGAGCC 60
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 CTCTCTCGATCTCGAAGGTGAAGCTATGGGAGTGAAGTATCTTTGGGATGTTTTGGAGCC 60
Query 61 TTGTAAGAAGACTTTCCCACTCGATCATCTTCAAAACAAAAGGGTATGCGTGGATCTTTC 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGCAAGAAGACTTTCCCACTCGATCATCTTCAAAACAAAAGGGTATGCGTGGATCTTTC 120
Query 121 GTGTTGGATGGTGGAATTGCATAAAGTGAACAAATCTTATTGCGCCACTAAAGAAAAAGT 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 GTGTTGGATGGTGGAATTGCATAAAGTGAACAAATCTTATTGCGCCGCTAAAGAAAAAGT 180
Query 181 TTATCTTCGAGGATTTTTTCATCGTCTCCGAGCCCTAATTGCCCTAAACTGCTCCATCAT 240
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTATCTTCGAGGACTCTTTCATCGTCTCCGAGCCCTAATTGCCCTAAACTGCTCCATCAT 240
Query 241 TTTAGTCTCAGATGGTGCAATTCCTGGAATCAAAGTACCAACTTACAAGCGTCGGTTAAA 300
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 241 TTTAGTCTCAGATGGTGCAATTCCTGGAATCAAAGTACCAACTTACAGGCGTCGATTAAA 300
Query 301 AGCAAGATTCGAGATCGCTGACGATGGTGTTGAGCCTAGCAAAGAGACTTCACTCAAAAG 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGCAAGATTCGAGGTCGCTGACGATGGTGTTGAGCCTAGCAAAGAGACTTCACTCAAAAG 360
Query 361 AAATATGGGGTCTGAGTTCTCGTGCATCATAAAAGAGGCGAAAGTTATTGCATCAACACT 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 AAATATGGGGTCTGAGTTCTCGTGCATCATAAAAGAGGCAAAAGTTATTGCATCAACACT 420
Query 421 AGGGATACTTTGTTTAGACGGGATTGAGGAGGCTGAGGCGCAATGCGCTCTGCTAAACTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 GGGGATACTTTGTTTAGACGGGATTGAGGAGGCTGAGGCGCAATGCGCTCTGCTGAACTC 480
Query 481 GGAATCCTTATGTGACGCCTGTTTTAGCTTTGATTCGGATATCTTCCTTTTTGGTGCAAA 540
||||| |||||||||||||||||||||| |||||| ||||||||||| || ||||||||
Sbjct 481 AGAATCTTTATGTGACGCCTGTTTTAGCTCTGATTCAGATATCTTCCTCTTCGGTGCAAA 540
Query 541 GACTGTATACAGAGAAATATGCCTTGGTGAAGGAGGTTATGTTGTTTGCTACGAGATGGA 600
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 541 GACTGTATACCGAGAAATATGCCTTGGTGAAGGAGGTTATGTTGTTTGCTATGAGATGGA 600
Query 601 TGACATCAAGAAAAAGCTTGGGCTTGGACGGAACTCATTGATAGCTCTAGCGCTTTTGCT 660
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 601 TGACATCAAGAAAAAGCTTGGTCTTGGACGGAACTCATTGATAGCTCTAGCACTTTTGCT 660
Query 661 TGGCAGTGACTACTCTCAGGGAGTTCGTGGTCTTCGACAGGAGAAAGCTTGTGAGCTTGT 720
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 661 TGGCAGTGACTACTCTCAGGGAGTTCGTGGTCTTCGTCAGGAGAAAGCTTGTGAGCTTGT 720
Query 721 TAGGTCGATTGGAGACAATGTTATCCTTGAAAAAGTTGCATCAGAAGGACTTTCCTTTGC 780
||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 721 TAGGTCGATTGGAGAAAATGTTATCCTTGAAAAGGTTGCATCAGAAGGACTTGCCTTTGC 780
Query 781 GGAAAAGCCGAGAAAGTCTAAGAAGCAAGTTAGGCCTTCTGTGTGCAGCAAAAAGGGGAC 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGAAAAGCCGAGAAAGTCTAAGAAGCAAGTTAGGCCTTCTGTGTGCAGCAAAAAGGGGAC 840
Query 841 CTTACCTTTGGTGGTTATAAATGGAAATAATCGTGATCCAGAAAGACTGGAAGAGATCAA 900
|||||||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||
Sbjct 841 CTTACCTTTGGTGGTTGTAAATGGAAATAATCGTGAACCAGAAGGACTGGAACAGATCAA 900
Query 901 GCAGGTGATCGATGCGTTCATGAACCCCAAGTGCCACCAAGCAGACTCTAATACAGTTTC 960
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 901 GCAGGTGATCGATGCGTTCATGGACCCCAAGTGCCACCAAGCAGACTCTGCTACAGTTTG 960
Query 961 CAGGGCCTTAGCTGAATTCTCTTTCCAGCGCACCAAGCTTCAGGAGATATGCCATCAGTT 1020
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CAGGGCCTTAGCTGAGTTCTCTTTCCAGCGCACCAAGCTTCAGGAGATATGCCATCAGTT 1020
Query 1021 CTTTGAGTGGCCCCCTGAGAAAACAGATGAATACATACTTCCTAAAGTTGCTGAAAGAAA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CTTTGAGTGGCCCCCTGAGAAAACAGATGAATACATACTTCCTAAAGTTGCTGAAAGAAA 1080
Query 1081 TCTGAGAAGGTTCGCTAATC-TGCAATCAAGATCAAC-TGAGGT-T-G-AAGTTAACC-- 1133
||||||||||||||||| || | || |||| | | | | | | | ||| ||
Sbjct 1081 TCTGAGAAGGTTCGCTA-TCCTCCA--CAAGGT-ACCCTTCTCTCTTGCAAGAAAAAAAA 1136
Query 1134 TTCCTCTCCACAAGCCGCAGATGCCAGAGAAGTGTCCGGTGTCTGAAATCATAAAGACCC 1193
||| ||| || ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1137 TTC-TCTTG-CA-GCCGCAGATGCCAGAAAAGTGTCCGGTGTCTGAAATCATAAAGACCC 1193
Query 1194 GAAAAGTACAGGGGCGAGAATGTTTTGAAGTCTCATGGAATGATCTAGAAGGGTTAGAGT 1253
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 GCAAAGTACAGGGACGAGAATGTTTTGAAGTCTCATGGAATGATCTAGAAGGGTTAGAGA 1253
Query 1254 CGTCCATTGTTCCTGCAGATCTTGTAGAAAGGGCTTGTCCTGAGAAGATCATAGAGTTCA 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 CGTCCATTGTTCCTGCAGATCTTGTAGAAAGGGCTTGTCCTGAGAAGATCATAGAGTTCA 1313
Query 1314 AGGagaaaatggcagcaaaaaagaagaaaccgaagccgaaacaaaaacagaaggaaacGA 1373
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1314 AGGAGAAAATGGCAGCAAAGAAGAAGAAACCGAAGCCGAAACAAAAACACAAGGAAACGA 1373
Query 1374 GTTCACCGACCAAATCTTCTTCTCTTGTCGAACTCAGCCTCGAACTCCAACACCTTGATC 1433
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1374 GTTCACCGACCAAATCTTCTTCTCTTGCCGAACTCAGCCTCGAACTCCAACACCTTGATC 1433
Query 1434 TCAACTCAACCTCTCTAGTAAGTAGAAGCACCTTAGAAGAAGCAGAGCAAGAGAACGAAC 1493
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1434 TCAACTCAACCTCTCTAGTAACTAGAAGCACCGTAGAAGAAGCAGAGCAAGAGAACGAAG 1493
Query 1494 AACAAAACTCCAAGAAACATGATTACTTGCGTCTTATCGATTCACCTGATAGAGAAAATT 1553
|||||||||||| |||||||| |||||| |||||||||||||||| |||||||||||||
Sbjct 1494 TACAAAACTCCAACAAACATGACTACTTGTGTCTTATCGATTCACCGGATAGAGAAAATT 1553
Query 1554 GCAATAACGCTTGGTCAAACAGGGATAGATTGGGTGTTGGAATGAGTTCATT-TCCATTG 1612
|||||||||||||||| | |||||||||||| |||||||| |||||| || || ||||
Sbjct 1554 GCAATAACGCTTGGTCGACCAGGGATAGATTCGGTGTTGGTCCGAGTTCCTTATC-ATTG 1612
Query 1613 TATCCGGAAACAGAAGTCATTGATCTGATAAGCCCTTGTCCTGAAGCTCGTTCACGGAGC 1672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 TATCCGGAAACAGAAGTCATTGATCTGATAAGCCCTTGTCCTGAAGCTCGTTCACGGAGC 1672
Query 1673 GTGTCAAGAAGTTATCAAGAACAGAAGAGCCATGATCACCAACTTGAGACTGTGATTGAG 1732
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1673 GTGTCAAGAAGTCATCAAGAACAGAAGAGACATGATCACCAACTTGAGACTGTGATTGAG 1732
Query 1733 CTGAGTGATTCAGAGACAGATGATGAGGAACATTGCAAGAAAGCTAGAGAGCTTAGGATC 1792
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1733 TTGAGTGATTCAGAGACAGATGATGAAGAACATTGCAAGAAAGCTAGAGAGCTTAGGATC 1792
Query 1793 TTTCTTCAAAATATCAGGAAAGACATTATCCTATGA 1828
|||||| ||||||||||||||||||||||||| |||
Sbjct 1793 TTTCTTGAAAATATCAGGAAAGACATTATCCTCTGA 1828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72600006970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5