BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48920.1
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347985 jgi|Araly1|347985|fgenesh1_pg.C_scaffold_5001377 1014 0.0
> Ahg347985 jgi|Araly1|347985|fgenesh1_pg.C_scaffold_5001377
Length=765
Score = 1014 bits (549), Expect = 0.0
Identities = 654/705 (93%), Gaps = 5/705 (1%)
Strand=Plus/Plus
Query 1 ATGGTGTTTAAATCAGAAAAATCAAACCGGGAAATGAAATCAAAGGAGAAGCAAAGGAAG 60
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1 ATGGTGTTTAAATCAGAAAAATCAAACCCGAAAATGAAATCAAAGGAGAAGCAAAGGAAA 60
Query 61 GGATTATGGTCACCCGAGGAAGATGAGAAGCTTAGGAGTCATGTCCTCAAATATGGCCAT 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGATTATGGTCACCGGAGGAAGATGAGAAGCTTAGGAGTCATGTCCTCAAATATGGCCAT 120
Query 121 GGATGCTGGAGTACTATTCCTCTTCAAGCTGGATTGCAGAGGAATGGGAAGAGTTGTAGA 180
||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGATGCTGGAGCACCATTCCTATTCAAGCTGGATTGCAGAGGAATGGGAAGAGTTGTAGA 180
Query 181 TTAAGGTGGGTTAATTATTTAAGACCTGGACTTAAGAAGTCTTTATTCACTAAACAAGAG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 TTAAGGTGGGTTAATTATTTAAGACCTGGACTTAAGAAGTCTTTATTCACTAAAGAAGAG 240
Query 241 GAAACTATACTTCTTTCACTTCATTCCATGTTGGGTAACAAATGGTCTCAGATATCGAAA 300
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 241 GAAACTATACTTCTCTCACTCCATTCCATGTTGGGTAACAAATGGTCACAGATATCGAAA 300
Query 301 TTCTTACCAGGAAGAACCGACAACGAGATCAAAAACTATTGGCATTCTAATCTAAAGAAG 360
|| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 301 TTTTTACCAGGCAGAACCGACAACGAAATCAAAAACTATTGGCATTCCAATCTAAAGAAG 360
Query 361 GGTGT---AACTTTGAAACAACATGAAACCACaaaaaaaCATCAAACACCTTTAATCACA 417
||||| |||||||| || |||||||||||||| || | ||||||||||| |||||||
Sbjct 361 GGTGTTGTAACTTTGACACCACATGAAACCACAAGAACCCCTCAAACACCTTCAATCACA 420
Query 418 AACTCACTTGAGGCCTTGCAGAGTTCAACTGAAAGATCTTCTTCATCTATCAATGTCGGA 477
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
Sbjct 421 AACTCACTTGAGGCCTTGCAGAGTACAACTGAAAGATCTGCTTCATCTATCAATGTCGCA 480
Query 478 GAAACGTCTAATGCTCAAACCTCAAGCTTTTCGCCAAATCTCGTGTTCTCGGAATGGTTA 537
||||| | ||||||||||| ||||||||||||||||| |||||||||||| || ||||||
Sbjct 481 GAAACATTTAATGCTCAAATCTCAAGCTTTTCGCCAAGTCTCGTGTTCTCTGATTGGTTA 540
Query 538 GATCATAGTTTGCTTATGGATCAGTCACCTCAAAAGTCTAGCTATGTTCAAAATCTTGTT 597
||||| ||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||
Sbjct 541 GATCACAGTTTGCTTATGGATCAGTCAACTCAAAAGTCTAGCTTTGTTCAAAACCTTGTT 600
Query 598 TTACCGGAAGAGAGAGGATTCATTGGACCATGTGGCCC-TCGTTATTTGGGAAACGACTC 656
|||||||||||||||||||||||||| ||||||||| | ||||||||| |||| || |
Sbjct 601 GTACCGGAAGAGAGAGGATTCATTGGATTATGTGGCCCGT-GTTATTTGGAAAACAACCC 659
Query 657 TTTGCCTGATTTCGTGCCAAATTCAGAATTTTTGTTGGATGATGA 701
||||||||||||||| |||| |||||| |||||||| || |||||
Sbjct 660 TTTGCCTGATTTCGTACCAACTTCAGATTTTTTGTTCGAGGATGA 704
Score = 80.5 bits (43), Expect = 2e-14
Identities = 56/62 (90%), Gaps = 2/62 (3%)
Strand=Plus/Plus
Query 726 TACTTCATTTTCA-GACAACTTTTTGTTCGATGGTCTCATCAACGAGCTACGACCAATGT 784
||||||||||| | ||||| |||||| ||| | |||||||||||||||||||||||||||
Sbjct 705 TACTTCATTTT-ATGACAATTTTTTGATCGGTAGTCTCATCAACGAGCTACGACCAATGT 763
Query 785 AA 786
||
Sbjct 764 AA 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29011539837
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5