BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48930.1
Length=821
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937661 jgi|Araly1|937661|scaffold_501852.1 870 0.0
Ahg941900 jgi|Araly1|941900|scaffold_602444.1 604 2e-172
> Ahg937661 jgi|Araly1|937661|scaffold_501852.1
Length=524
Score = 870 bits (471), Expect = 0.0
Identities = 508/525 (97%), Gaps = 5/525 (1%)
Strand=Plus/Plus
Query 73 GCGGGAGCTCAACATCAGCCATGGCGGAACAGACTGAGAAAGCTTTTCTTAAGCAGCCTA 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCGGGAGCTCAACATCAGCCATGGCGGAACAGACTGAGAAAGCTTTTCTTAAGCAGCCTA 60
Query 133 AGGTCTTCCTTAGCTCGAAGAAATCTGG-AAAGGGAAAGAGACCTGGAAAAGGTGGAAAC 191
|||||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||
Sbjct 61 AGGTCTTCCTTAGCTCGAAGAAATCTGGAAAAGGG-AAGCGACCTGGGAAAGGTGGAAAC 119
Query 192 CGTTTCTGGAAGAACATTGGTTTGGGCTTCAAGACTCCTCGTGAAGCCATTGATGGAGCT 251
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 120 CGTTTCTGGAAGAGCATTGGTTTGGGCTTTAAGACTCCTCGTGAAGCCATTGATGGAGCT 179
Query 252 TACGTTGACAAGAAATGCCCCTTCACTGGAACTGTTTCCATTAGAGGTCGTATCTTAGCT 311
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TACGTTGACAAGAAATGCCCCTTCACTGGAACTGTTTCCATTAGAGGTCGTATCTTAGCC 239
Query 312 GGTACTTGCCACAGTGCGAAAATGCAGAGGACCATTATCGTGCGAAGGGATTACCTTCAC 371
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGTACTTGCCACAGTGCTAAAATGCAGAGGACCATTATCGTGCGAAGGGATTACCTTCAC 299
Query 372 TTTGTGAAGAAGTATCAGAGGTATGAGAAGAGGCATTCAAACATTCCGGCTCATGTCTCA 431
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 300 TTTGTGAAGAAGTATCAGAGGTATGAGAAGAGGCATTCAAACATTCCTGCTCATGTATCT 359
Query 432 CCATGCTTCCGTGTTAAGGAAGGAGACCATATCATCATTGGCCAATGCAGGCCATTGTCG 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCATGCTTCCGTGTTAAGGAAGGAGACCATATCATCATTGGCCAATGCAGGCCATTGTCG 419
Query 492 AAGACAGTGAGGTTCAATGTGTTGAAGGTGATACCAGCTGGGTCTTCTTCTTCATTTGGA 551
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 420 AAGACAGTGAGGTTCAATGTGTTGAAGGTGATACCAGCTGGGTCTTCTTCTTCTTTTGGA 479
Query 552 AAGAAGGCATTCACTGGAATGTAAGCT---GCTGCTGTTGATGAT 593
||||||||||||||||||||||||||| ||||||| || ||||
Sbjct 480 AAGAAGGCATTCACTGGAATGTAAGCTTAAGCTGCTGCTGTTGAT 524
> Ahg941900 jgi|Araly1|941900|scaffold_602444.1
Length=521
Score = 604 bits (327), Expect = 2e-172
Identities = 438/491 (89%), Gaps = 9/491 (2%)
Strand=Plus/Plus
Query 89 AGCCATGGCGGAACAGACTGAGAAAGCTTTTCTTAAGCAGCCTAAGGTCTTCCTTAGCTC 148
||||||||| || |||||||||||||||||||||||||| || || |||||||| |||||
Sbjct 17 AGCCATGGCTGAGCAGACTGAGAAAGCTTTTCTTAAGCAACCCAAAGTCTTCCTAAGCTC 76
Query 149 GAAGAAATCT-GGAAAGGGAAAGAGACCTGGAAAAGGTGGAAACCGTTTCTGGAAGAACA 207
||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 GAAGACATCTGGGAAA-GGAAAGAGACCTGGAAAAGGTGGAAACCGTTTCTGGAAGAACA 135
Query 208 TTGGTTTGGGCTTCAAGACTCCTCGTGAAGCCATTGATGGAGCTTACGTTGACAAG-AAA 266
|||||||||| |||||||||||||||||||||||||| ||||||||| |||||| | |||
Sbjct 136 TTGGTTTGGGTTTCAAGACTCCTCGTGAAGCCATTGAAGGAGCTTACATTGACA-GTAAA 194
Query 267 TGCCCCTTCACTGGAACTGTTTCCATTAGAGGTCGTATCTTAGCTGGTACTTGCCACAGT 326
|| || ||||||||||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 195 TGTCCATTCACTGGAACTGTTTCTATCAGAGGTCGTATCCTAGCTGGTACTTGCCACAGT 254
Query 327 GCGAAAATGCAGAGGACCATTATCGTGCGAAGGGATTACCTTCACTTTGTGAAGAAGTAT 386
|| || |||||||| ||||| || || || ||| ||||||||||||||||||||||||||
Sbjct 255 GCCAAGATGCAGAGAACCATCATTGTTCGTAGGAATTACCTTCACTTTGTGAAGAAGTAT 314
Query 387 CAGAGG-TATGAGAAGAGGCATTCAAACATTCCGGCTCATGTCTCACCATGCTTCCGTGT 445
|| | | ||||||||||| ||||| || || || |||||||||||||| |||||||||||
Sbjct 315 CA-ACGATATGAGAAGAGACATTCCAATATCCCTGCTCATGTCTCACCGTGCTTCCGTGT 373
Query 446 TAAGGAAGGAGACCATATCATCATTGGCCAATGCAGGCCATTGTCGAAGACAGTGAGGTT 505
|||||||| |||||| |||||||||||||||||||||| |||||||||||||| |||||
Sbjct 374 CAAGGAAGGTGACCATGTCATCATTGGCCAATGCAGGCCGTTGTCGAAGACAGTCAGGTT 433
Query 506 CAATGTGTTGAAGGTGATACCAGCTGGGTCTTCTTCTTCATTTGGAAAGAAGGCATTCAC 565
|||||||||||||||||| ||||| ||| | | || | ||||| |||||||| |||||
Sbjct 434 CAATGTGTTGAAGGTGATCCCAGC-GGG-CG-CATCCGCCTTTGGTAAGAAGGCCTTCAC 490
Query 566 TGGAATGTAAG 576
|||| ||||||
Sbjct 491 TGGAGTGTAAG 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30345841932
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5