BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G48940.1 Length=528 Score E Sequences producing significant alignments: (Bits) Value Ahg323485 jgi|Araly1|323485|fgenesh1_pm.C_scaffold_5001029 798 0.0 Ahg489237 jgi|Araly1|489237|fgenesh2_kg.6__2371__AT5G23750.1 383 8e-106 > Ahg323485 jgi|Araly1|323485|fgenesh1_pm.C_scaffold_5001029 Length=528 Score = 798 bits (432), Expect = 0.0 Identities = 497/529 (94%), Gaps = 2/529 (0%) Strand=Plus/Plus Query 1 ATGACTTTAGAGGAGCAGAAGAAAGTCATA-ATGCCCGAGGCCGTCGCATCGGAGCCATC 59 |||||| ||||||||||||||||||||||| | ||||||| |||| |||||||| ||||| Sbjct 1 ATGACTCTAGAGGAGCAGAAGAAAGTCATAGA-GCCCGAGACCGTGGCATCGGACCCATC 59 Query 60 ACCACCATCCAAGGAGGAGAAGTCCGACGATTCGAAAGCTATTGTTCTCGTCGTCGCTGC 119 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 60 ACCACCATCCAAGGAGGAGAAGTCGGACGATTCGAAAGCTATTGTTCTCGTCGTCGCTGC 119 Query 120 AAAAGAACCTACGGAAGACAAGAAAGTAGGTTCAGTTCACCGAGATGCTGTTTTGGTTAG 179 |||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct 120 AAAAGAACCTGCGGAAGAGAAGAAAGAAGGTTCAGTTCACCGAGATGCTGTTTTGGTTAG 179 Query 180 ACTCGAGCAAGATAAGAGGATATCTCTAATCAAAGCTTGGGAAGAGGCTGAGAAATCCAA 239 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 180 ACTTGAGCAAGATAAGAGGATATCTCTCATCAAAGCTTGGGAAGAGGCTGAGAAATCCAA 239 Query 240 AGTGGAGAACAAAGCTCAGAAGAAGATTTCTTCAGTTGGAGCTTGGGAAAACAGCAAGAA 299 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 240 AGTGGAGAACAAAGCTCAGAAGAAGCTTTCTTCAGTTGGAGCTTGGGAAAACAGCAAGAA 299 Query 300 AGCTTCTGTGGAAGCTGAGCTAAAAAAGATCGAGGAGCAACTAAATAAGAAGAAAGCACA 359 ||||| ||| ||||||||||| |||| ||| ||||||||||| ||| |||||||||| Sbjct 300 AGCTTGTGTTGAAGCTGAGCTTAAAATGATTGAGGAGCAACTTCTTAAAAAGAAAGCACG 359 Query 360 CTACACAGAGCAAATGAAGAACAAGATAGCTCAAATCCACAAGGAAGCTGAGGAGAAGAG 419 ||||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||| Sbjct 360 TTACACAGAGCAAATGAAGAACAAAATAGCACAAATCCACAAGAAAGCTGAAGAGAAGAG 419 Query 420 AGCGATGACCGAAGCTAAACGCGGAGAAGATGTTCTCAAAGCCGAAGAAATGGCTGCAAA 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 AGCGATGACCGAAGCTAAACGCGGAGAAGATGTTCTCAAAGCCGAAGAAATGGCTGCAAA 479 Query 480 GTACCGTGCCACCGGAACTGCTCCAACCAAGCTATTTGGATTCTTCTGA 528 |||||| ||||| |||||||||||||| |||||||||||||| |||||| Sbjct 480 GTACCGCGCCACAGGAACTGCTCCAACGAAGCTATTTGGATTGTTCTGA 528 > Ahg489237 jgi|Araly1|489237|fgenesh2_kg.6__2371__AT5G23750.1 Length=977 Score = 383 bits (207), Expect = 8e-106 Identities = 375/455 (82%), Gaps = 15/455 (3%) Strand=Plus/Plus Query 72 GGAGGAGAAGTC-CGACGATTCGAAAGCTATTGTTCTCGTCGTCGCTGCAAAAGAACCTA 130 |||||||||| | || || || || ||| |||||| ||| |||||| || ||| || Sbjct 323 GGAGGAGAAG-CTAGAAGACTCCAAGGCTCTTGTTCCCGTTGTCGCT---AAGGAA-GTA 377 Query 131 -CGGAAGACAAGAAAGTAGGTTCAGTTCACCGAGATGCTGTTTTGGTTAGACTCGAGCA- 188 |||||| ||||||| ||| |||||| | |||||||||||| ||| |||| | ||| | Sbjct 378 GAGGAAGAGAAGAAAGAAGGATCAGTTAATCGAGATGCTGTTCTGGCTAGAGTTGAG-AC 436 Query 189 AGATAAGAGGATATCTCTAATCAAAGCTTGGGAAGAGGCTGAGAAATCCAAAGTGGAGAA 248 ||| |||||||| || || |||||||||||||||||||||||||||| |||||||||||| Sbjct 437 AGAGAAGAGGATGTCACTTATCAAAGCTTGGGAAGAGGCTGAGAAATGCAAAGTGGAGAA 496 Query 249 CAAAGCTCAGAAGAAGATTTCTTCAGTTGGAG-CTTGGGAAAACAGCAAGAAAGCTTCTG 307 ||||||| |||||||| |||||||| |||| | | ||||| |||| ||||||||| ||| Sbjct 497 CAAAGCTGAGAAGAAGCTTTCTTCAATTGG-GTCATGGGAGAACAACAAGAAAGCAGCTG 555 Query 308 TGGAAGCTGAGCTAAA-AAAGATCGAGGAGCAACTAAATAAGAAGAAAGCACACTACACA 366 ||||||||||||| || ||| || |||||||| | | |||||||| ||| | || Sbjct 556 TGGAAGCTGAGCTCAAGAAA-ATGGAGGAGCATTTGGAGAAGAAGAAGGCAGAGTATGTG 614 Query 367 GAGCAAATGAAGAACAAGATAGCTCAAATCCACAAGGAAGCTGAGGAGAAGAGAGCGATG 426 |||| ||||||||||| ||||||||||| |||||||||||||| || |||||||||||| Sbjct 615 GAGCTGATGAAGAACAAAATAGCTCAAATTCACAAGGAAGCTGAAGAAAAGAGAGCGATG 674 Query 427 ACCGAAGCTAAACGCGGAGAAGATGTTCTCAAAGCCGAAGAAATGGCTGCAAAGTACCGT 486 | ||||||||| || |||||||| |||||||||||||| ||| | ||||| ||||||||| Sbjct 675 ATCGAAGCTAAGCGTGGAGAAGAAGTTCTCAAAGCCGAGGAATTAGCTGCCAAGTACCGT 734 Query 487 GCCACCGGAACTGCTCC-AACCAAGCTATTTGGAT 520 ||||| ||||| ||||| || ||||| ||||||| Sbjct 735 GCCACTGGAACCGCTCCCAAA-AAGCTTTTTGGAT 768 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19230416856 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5