BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48940.1
Length=528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323485 jgi|Araly1|323485|fgenesh1_pm.C_scaffold_5001029 798 0.0
Ahg489237 jgi|Araly1|489237|fgenesh2_kg.6__2371__AT5G23750.1 383 8e-106
> Ahg323485 jgi|Araly1|323485|fgenesh1_pm.C_scaffold_5001029
Length=528
Score = 798 bits (432), Expect = 0.0
Identities = 497/529 (94%), Gaps = 2/529 (0%)
Strand=Plus/Plus
Query 1 ATGACTTTAGAGGAGCAGAAGAAAGTCATA-ATGCCCGAGGCCGTCGCATCGGAGCCATC 59
|||||| ||||||||||||||||||||||| | ||||||| |||| |||||||| |||||
Sbjct 1 ATGACTCTAGAGGAGCAGAAGAAAGTCATAGA-GCCCGAGACCGTGGCATCGGACCCATC 59
Query 60 ACCACCATCCAAGGAGGAGAAGTCCGACGATTCGAAAGCTATTGTTCTCGTCGTCGCTGC 119
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 60 ACCACCATCCAAGGAGGAGAAGTCGGACGATTCGAAAGCTATTGTTCTCGTCGTCGCTGC 119
Query 120 AAAAGAACCTACGGAAGACAAGAAAGTAGGTTCAGTTCACCGAGATGCTGTTTTGGTTAG 179
|||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 120 AAAAGAACCTGCGGAAGAGAAGAAAGAAGGTTCAGTTCACCGAGATGCTGTTTTGGTTAG 179
Query 180 ACTCGAGCAAGATAAGAGGATATCTCTAATCAAAGCTTGGGAAGAGGCTGAGAAATCCAA 239
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 ACTTGAGCAAGATAAGAGGATATCTCTCATCAAAGCTTGGGAAGAGGCTGAGAAATCCAA 239
Query 240 AGTGGAGAACAAAGCTCAGAAGAAGATTTCTTCAGTTGGAGCTTGGGAAAACAGCAAGAA 299
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 AGTGGAGAACAAAGCTCAGAAGAAGCTTTCTTCAGTTGGAGCTTGGGAAAACAGCAAGAA 299
Query 300 AGCTTCTGTGGAAGCTGAGCTAAAAAAGATCGAGGAGCAACTAAATAAGAAGAAAGCACA 359
||||| ||| ||||||||||| |||| ||| ||||||||||| ||| ||||||||||
Sbjct 300 AGCTTGTGTTGAAGCTGAGCTTAAAATGATTGAGGAGCAACTTCTTAAAAAGAAAGCACG 359
Query 360 CTACACAGAGCAAATGAAGAACAAGATAGCTCAAATCCACAAGGAAGCTGAGGAGAAGAG 419
||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||
Sbjct 360 TTACACAGAGCAAATGAAGAACAAAATAGCACAAATCCACAAGAAAGCTGAAGAGAAGAG 419
Query 420 AGCGATGACCGAAGCTAAACGCGGAGAAGATGTTCTCAAAGCCGAAGAAATGGCTGCAAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGCGATGACCGAAGCTAAACGCGGAGAAGATGTTCTCAAAGCCGAAGAAATGGCTGCAAA 479
Query 480 GTACCGTGCCACCGGAACTGCTCCAACCAAGCTATTTGGATTCTTCTGA 528
|||||| ||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 480 GTACCGCGCCACAGGAACTGCTCCAACGAAGCTATTTGGATTGTTCTGA 528
> Ahg489237 jgi|Araly1|489237|fgenesh2_kg.6__2371__AT5G23750.1
Length=977
Score = 383 bits (207), Expect = 8e-106
Identities = 375/455 (82%), Gaps = 15/455 (3%)
Strand=Plus/Plus
Query 72 GGAGGAGAAGTC-CGACGATTCGAAAGCTATTGTTCTCGTCGTCGCTGCAAAAGAACCTA 130
|||||||||| | || || || || ||| |||||| ||| |||||| || ||| ||
Sbjct 323 GGAGGAGAAG-CTAGAAGACTCCAAGGCTCTTGTTCCCGTTGTCGCT---AAGGAA-GTA 377
Query 131 -CGGAAGACAAGAAAGTAGGTTCAGTTCACCGAGATGCTGTTTTGGTTAGACTCGAGCA- 188
|||||| ||||||| ||| |||||| | |||||||||||| ||| |||| | ||| |
Sbjct 378 GAGGAAGAGAAGAAAGAAGGATCAGTTAATCGAGATGCTGTTCTGGCTAGAGTTGAG-AC 436
Query 189 AGATAAGAGGATATCTCTAATCAAAGCTTGGGAAGAGGCTGAGAAATCCAAAGTGGAGAA 248
||| |||||||| || || |||||||||||||||||||||||||||| ||||||||||||
Sbjct 437 AGAGAAGAGGATGTCACTTATCAAAGCTTGGGAAGAGGCTGAGAAATGCAAAGTGGAGAA 496
Query 249 CAAAGCTCAGAAGAAGATTTCTTCAGTTGGAG-CTTGGGAAAACAGCAAGAAAGCTTCTG 307
||||||| |||||||| |||||||| |||| | | ||||| |||| ||||||||| |||
Sbjct 497 CAAAGCTGAGAAGAAGCTTTCTTCAATTGG-GTCATGGGAGAACAACAAGAAAGCAGCTG 555
Query 308 TGGAAGCTGAGCTAAA-AAAGATCGAGGAGCAACTAAATAAGAAGAAAGCACACTACACA 366
||||||||||||| || ||| || |||||||| | | |||||||| ||| | ||
Sbjct 556 TGGAAGCTGAGCTCAAGAAA-ATGGAGGAGCATTTGGAGAAGAAGAAGGCAGAGTATGTG 614
Query 367 GAGCAAATGAAGAACAAGATAGCTCAAATCCACAAGGAAGCTGAGGAGAAGAGAGCGATG 426
|||| ||||||||||| ||||||||||| |||||||||||||| || ||||||||||||
Sbjct 615 GAGCTGATGAAGAACAAAATAGCTCAAATTCACAAGGAAGCTGAAGAAAAGAGAGCGATG 674
Query 427 ACCGAAGCTAAACGCGGAGAAGATGTTCTCAAAGCCGAAGAAATGGCTGCAAAGTACCGT 486
| ||||||||| || |||||||| |||||||||||||| ||| | ||||| |||||||||
Sbjct 675 ATCGAAGCTAAGCGTGGAGAAGAAGTTCTCAAAGCCGAGGAATTAGCTGCCAAGTACCGT 734
Query 487 GCCACCGGAACTGCTCC-AACCAAGCTATTTGGAT 520
||||| ||||| ||||| || ||||| |||||||
Sbjct 735 GCCACTGGAACCGCTCCCAAA-AAGCTTTTTGGAT 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19230416856
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5