BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G48950.1 Length=1410 Score E Sequences producing significant alignments: (Bits) Value Ahg897748 jgi|Araly1|897748|Al_scaffold_0005_1714 2078 0.0 > Ahg897748 jgi|Araly1|897748|Al_scaffold_0005_1714 Length=1410 Score = 2078 bits (1125), Expect = 0.0 Identities = 1322/1417 (93%), Gaps = 14/1417 (1%) Strand=Plus/Plus Query 1 ATGATTAGACCAACGTTTGGT-TTACTAGTCTTTTTGGCTATATTCCTTTTTCCGGCGAT 59 |||||||| |||| ||||||| || |||||| ||||||||||| || ||||||||||| Sbjct 1 ATGATTAGGCCAATGTTTGGTATT-CTAGTCATTTTGGCTATACTCAGCTTTCCGGCGAT 59 Query 60 TGAATCCCGGAGTCACCGAAAT-TCGGTGACTTCCA-AGATTGA-ATTTTCAGCGCTGAA 116 ||| ||||||||||||| |||| | |||| ||| || |||| | ||||||||| |||| Sbjct 60 TGAGTCCCGGAGTCACCAAAATGT-GGTGTCTT-CAGGGATT-AGATTTTCAGCATTGAA 116 Query 117 TTGCCGGAAACATAGTGCAATACTGACTGATTTTGGTGCGGTTGGAGATGGAAAAACTTC 176 |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 117 TTGCCGGAAACATAGTGCAATATTGACTGACTTTGGTGCGGTTGGAGATGGAAAAACTTC 176 Query 177 TAATACAAAAGCGTTT-AGAAATGCCATAAGCAAGCTCAGCCAAATGGCAACCGATGGCG 235 ||||||||| |||||| ||||| |||||||||||||||||||||||||||||||| || | Sbjct 177 TAATACAAACGCGTTTAAGAAA-GCCATAAGCAAGCTCAGCCAAATGGCAACCGACGGTG 235 Query 236 GAGCTCAACTCGTAGTACCTCCCGGAAAATGGCTTACCGGAAGTTTTAACCTTACAAGCC 295 |||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||| Sbjct 236 GAGCTCAACTCGTAGTTCCTCCCGGAAAATGGCTTACGGGAAGTTTTAACCTTACCAGCC 295 Query 296 A-TTTCACTTTGTTCATCCAGCGAGGTGCTACCATCCTTGCATCTCAGGATGAATCTGAA 354 | ||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 296 ACTTT-ACTTTGTTCATCCAACGAGGGGCTACCATCCTTGCATCTCAGGATGAATCTGAA 354 Query 355 TGGCCAGTTATCGCTCCATTGCCATCGTACGGGAAAGGAAGAGACGGAACCGGAACCGGG 414 |||||||| |||||||| |||||||| |||||||||||||||||||| |||||||||||| Sbjct 355 TGGCCAGTGATCGCTCCTTTGCCATCTTACGGGAAAGGAAGAGACGGGACCGGAACCGGG 414 Query 415 AGATTCAACAGTCTCATCTCCGGTACAAACCTAACCGACGTGGTTATCACTGGTAACAAC 474 |||||||||||||||||||||||||||||| |||||||||||||||| || |||||||| Sbjct 415 AGATTCAACAGTCTCATCTCCGGTACAAACTTAACCGACGTGGTTATAACCGGTAACAAT 474 Query 475 GGAACGATCAACGGACAGGGACAGTATTGGTGGGACAAATTCAAGAAGAAGCAGTTCAAA 534 ||||| ||||||||||||||||| ||||||||||| |||||||| |||||||| ||||| Sbjct 475 GGAACTATCAACGGACAGGGACAATATTGGTGGGATAAATTCAAAAAGAAGCAATTCAAG 534 Query 535 ATAACAAGACCGTACTTGATCGAGA-TCTTGTTCTCCAAAAACATTCAAATCTCGAACAT 593 |||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 535 TTAACAAGACCATACTTGATCGA-ACTCTTGTTCTCCAAAAACATTCAAATCTCGAACAT 593 Query 594 CACATTGATCGATTCGCCGTCGTGGAATATTCATCCTGTCTATTGTAATAGCGTCATTGT 653 ||||||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||| Sbjct 594 CACATTGATCGATTCACCATCGTGGAATATTCATCCCGTCTATTGTAATAACGTCATTGT 653 Query 654 CAAATCCGTCACCGTTCTTGCTCCCGTCACTGTTCCCAACACCGACGGTATCAATCCAGA 713 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 654 CAAATCCGTCACCGTTCTTGCTCCCGTCACTGTTCCCAACACCGACGGAATCAATCCAGA 713 Query 714 TTCTTGCACAAACACATTGATCGAAGACTGTTACATAGTCTCCGGAGACGACTGCATCGC 773 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 714 TTCTTGCACAAACACATTGATCGAAGACTGCTACATAGTCTCCGGCGACGACTGCATCGC 773 Query 774 CGTCAAAAGCGGTTGGGACCAATACGGAATCAAATTCGGAATGCCGACGCAGCAACTCTC 833 || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 774 GGTAAAAAGCGGTTGGGACCAATACGGAATCAAATTCGGAATGCCAACGCAGCAACTCTC 833 Query 834 GATCCGACGGCTGACATGCATCTCCCCAAAGAGTGCAGGAGTAGCCTTAGGAAGTGAAAT 893 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 834 CATCCGACGGCTCACATGCATCTCCCCAAAGAGTGCAGGAGTAGCCTTAGGAAGTGAAAT 893 Query 894 GTCCGGAGGAATCAAAGACGTTAGAATCGAAGATGTAACTCTAACCAACACCGAATCCGC 953 ||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| Sbjct 894 GTCCGGAGGAATCAAAGACGTTAGAATTGAAGACGTGACTCTAACCAACACCGAATCCGC 953 Query 954 CATCCGAATCAAAACTGCGGTGGGACGTGGCGCTTACGTCAAGGATATTTACGCTAGGAG 1013 ||||||||||||||||||| ||||||||| |||||||||||||| |||| ||||||||| Sbjct 954 AATCCGAATCAAAACTGCGGCGGGACGTGGAGCTTACGTCAAGGACATTTTCGCTAGGAG 1013 Query 1014 GATCACAATGAAGACGATGAAATATGTTTTCTGGATGAGTGGAAACTACGGTAGTCATCC 1073 ||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 1014 GATAACAATGAAGACGATGAAATACGTTTTCTGGATGAGTGGAAACTACAATAGTCATCC 1073 Query 1074 TGACGAAGGATTTGATCCCAAGGCGTTGCCGGAAATTACTAATATCAATTACCGCGATAT 1133 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1074 TGACGAAGGATTTGATCCCAAGGCGTTGCCGGAAGTTACTAATATCAATTACCGCGATAT 1133 Query 1134 GACGGCGGAGAATGTTACAATGTCAGCGAGTCTCGACGGGATTGATAAAGATCCGTTTAC 1193 |||||||||||| ||||| ||||| |||||||| ||||||||| |||||||||||||||| Sbjct 1134 GACGGCGGAGAACGTTACCATGTCGGCGAGTCTTGACGGGATTCATAAAGATCCGTTTAC 1193 Query 1194 GGGTATTTGTATCTCGAATGTGACTATAGCTTTGGCGGCTAAGGCTAAGAAAATGCAGTG 1253 |||||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||| Sbjct 1194 GGGTATTTGTATATCGAATGTGACTATAGCTTTGGCAGATAAGGCTAAGAAGGTGCAGTG 1253 Query 1254 GAATTGTACAGATGTGGCTGGAGTTACCAGCAGAGTTACGCCAGAGCCATGTAGTTTGTT 1313 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1254 GAATTGTACAGATGTGGCTGGAGTTACCAGCAGAGTTACGCCAGAACCATGTAGTTTGTT 1313 Query 1314 GCCTGAGAAGAAAGCTCAGGCGAAGAATGTTGACTGTGCGTTTCCGTCTGATTTGATTCC 1373 ||| ||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| Sbjct 1314 GCCGGAGAAGAAAGCTCCGGCCAAGAATGAGGACTGTGCGTTTCCGTCTGATTTGATTCC 1373 Query 1374 GATTGAGAGTGTTGTATTGAAGAAGTGCTTTCTTTGA 1410 ||||||||||||||||||||||||||||| ||||||| Sbjct 1374 GATTGAGAGTGTTGTATTGAAGAAGTGCTCTCTTTGA 1410 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52716899080 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5