BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48950.1
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897748 jgi|Araly1|897748|Al_scaffold_0005_1714 2078 0.0
> Ahg897748 jgi|Araly1|897748|Al_scaffold_0005_1714
Length=1410
Score = 2078 bits (1125), Expect = 0.0
Identities = 1322/1417 (93%), Gaps = 14/1417 (1%)
Strand=Plus/Plus
Query 1 ATGATTAGACCAACGTTTGGT-TTACTAGTCTTTTTGGCTATATTCCTTTTTCCGGCGAT 59
|||||||| |||| ||||||| || |||||| ||||||||||| || |||||||||||
Sbjct 1 ATGATTAGGCCAATGTTTGGTATT-CTAGTCATTTTGGCTATACTCAGCTTTCCGGCGAT 59
Query 60 TGAATCCCGGAGTCACCGAAAT-TCGGTGACTTCCA-AGATTGA-ATTTTCAGCGCTGAA 116
||| ||||||||||||| |||| | |||| ||| || |||| | ||||||||| ||||
Sbjct 60 TGAGTCCCGGAGTCACCAAAATGT-GGTGTCTT-CAGGGATT-AGATTTTCAGCATTGAA 116
Query 117 TTGCCGGAAACATAGTGCAATACTGACTGATTTTGGTGCGGTTGGAGATGGAAAAACTTC 176
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 117 TTGCCGGAAACATAGTGCAATATTGACTGACTTTGGTGCGGTTGGAGATGGAAAAACTTC 176
Query 177 TAATACAAAAGCGTTT-AGAAATGCCATAAGCAAGCTCAGCCAAATGGCAACCGATGGCG 235
||||||||| |||||| ||||| |||||||||||||||||||||||||||||||| || |
Sbjct 177 TAATACAAACGCGTTTAAGAAA-GCCATAAGCAAGCTCAGCCAAATGGCAACCGACGGTG 235
Query 236 GAGCTCAACTCGTAGTACCTCCCGGAAAATGGCTTACCGGAAGTTTTAACCTTACAAGCC 295
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 236 GAGCTCAACTCGTAGTTCCTCCCGGAAAATGGCTTACGGGAAGTTTTAACCTTACCAGCC 295
Query 296 A-TTTCACTTTGTTCATCCAGCGAGGTGCTACCATCCTTGCATCTCAGGATGAATCTGAA 354
| ||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 296 ACTTT-ACTTTGTTCATCCAACGAGGGGCTACCATCCTTGCATCTCAGGATGAATCTGAA 354
Query 355 TGGCCAGTTATCGCTCCATTGCCATCGTACGGGAAAGGAAGAGACGGAACCGGAACCGGG 414
|||||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 355 TGGCCAGTGATCGCTCCTTTGCCATCTTACGGGAAAGGAAGAGACGGGACCGGAACCGGG 414
Query 415 AGATTCAACAGTCTCATCTCCGGTACAAACCTAACCGACGTGGTTATCACTGGTAACAAC 474
|||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||
Sbjct 415 AGATTCAACAGTCTCATCTCCGGTACAAACTTAACCGACGTGGTTATAACCGGTAACAAT 474
Query 475 GGAACGATCAACGGACAGGGACAGTATTGGTGGGACAAATTCAAGAAGAAGCAGTTCAAA 534
||||| ||||||||||||||||| ||||||||||| |||||||| |||||||| |||||
Sbjct 475 GGAACTATCAACGGACAGGGACAATATTGGTGGGATAAATTCAAAAAGAAGCAATTCAAG 534
Query 535 ATAACAAGACCGTACTTGATCGAGA-TCTTGTTCTCCAAAAACATTCAAATCTCGAACAT 593
|||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 535 TTAACAAGACCATACTTGATCGA-ACTCTTGTTCTCCAAAAACATTCAAATCTCGAACAT 593
Query 594 CACATTGATCGATTCGCCGTCGTGGAATATTCATCCTGTCTATTGTAATAGCGTCATTGT 653
||||||||||||||| || ||||||||||||||||| ||||||||||||| |||||||||
Sbjct 594 CACATTGATCGATTCACCATCGTGGAATATTCATCCCGTCTATTGTAATAACGTCATTGT 653
Query 654 CAAATCCGTCACCGTTCTTGCTCCCGTCACTGTTCCCAACACCGACGGTATCAATCCAGA 713
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 654 CAAATCCGTCACCGTTCTTGCTCCCGTCACTGTTCCCAACACCGACGGAATCAATCCAGA 713
Query 714 TTCTTGCACAAACACATTGATCGAAGACTGTTACATAGTCTCCGGAGACGACTGCATCGC 773
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 714 TTCTTGCACAAACACATTGATCGAAGACTGCTACATAGTCTCCGGCGACGACTGCATCGC 773
Query 774 CGTCAAAAGCGGTTGGGACCAATACGGAATCAAATTCGGAATGCCGACGCAGCAACTCTC 833
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 774 GGTAAAAAGCGGTTGGGACCAATACGGAATCAAATTCGGAATGCCAACGCAGCAACTCTC 833
Query 834 GATCCGACGGCTGACATGCATCTCCCCAAAGAGTGCAGGAGTAGCCTTAGGAAGTGAAAT 893
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 CATCCGACGGCTCACATGCATCTCCCCAAAGAGTGCAGGAGTAGCCTTAGGAAGTGAAAT 893
Query 894 GTCCGGAGGAATCAAAGACGTTAGAATCGAAGATGTAACTCTAACCAACACCGAATCCGC 953
||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 894 GTCCGGAGGAATCAAAGACGTTAGAATTGAAGACGTGACTCTAACCAACACCGAATCCGC 953
Query 954 CATCCGAATCAAAACTGCGGTGGGACGTGGCGCTTACGTCAAGGATATTTACGCTAGGAG 1013
||||||||||||||||||| ||||||||| |||||||||||||| |||| |||||||||
Sbjct 954 AATCCGAATCAAAACTGCGGCGGGACGTGGAGCTTACGTCAAGGACATTTTCGCTAGGAG 1013
Query 1014 GATCACAATGAAGACGATGAAATATGTTTTCTGGATGAGTGGAAACTACGGTAGTCATCC 1073
||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1014 GATAACAATGAAGACGATGAAATACGTTTTCTGGATGAGTGGAAACTACAATAGTCATCC 1073
Query 1074 TGACGAAGGATTTGATCCCAAGGCGTTGCCGGAAATTACTAATATCAATTACCGCGATAT 1133
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1074 TGACGAAGGATTTGATCCCAAGGCGTTGCCGGAAGTTACTAATATCAATTACCGCGATAT 1133
Query 1134 GACGGCGGAGAATGTTACAATGTCAGCGAGTCTCGACGGGATTGATAAAGATCCGTTTAC 1193
|||||||||||| ||||| ||||| |||||||| ||||||||| ||||||||||||||||
Sbjct 1134 GACGGCGGAGAACGTTACCATGTCGGCGAGTCTTGACGGGATTCATAAAGATCCGTTTAC 1193
Query 1194 GGGTATTTGTATCTCGAATGTGACTATAGCTTTGGCGGCTAAGGCTAAGAAAATGCAGTG 1253
|||||||||||| ||||||||||||||||||||||| | |||||||||||| |||||||
Sbjct 1194 GGGTATTTGTATATCGAATGTGACTATAGCTTTGGCAGATAAGGCTAAGAAGGTGCAGTG 1253
Query 1254 GAATTGTACAGATGTGGCTGGAGTTACCAGCAGAGTTACGCCAGAGCCATGTAGTTTGTT 1313
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1254 GAATTGTACAGATGTGGCTGGAGTTACCAGCAGAGTTACGCCAGAACCATGTAGTTTGTT 1313
Query 1314 GCCTGAGAAGAAAGCTCAGGCGAAGAATGTTGACTGTGCGTTTCCGTCTGATTTGATTCC 1373
||| ||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1314 GCCGGAGAAGAAAGCTCCGGCCAAGAATGAGGACTGTGCGTTTCCGTCTGATTTGATTCC 1373
Query 1374 GATTGAGAGTGTTGTATTGAAGAAGTGCTTTCTTTGA 1410
||||||||||||||||||||||||||||| |||||||
Sbjct 1374 GATTGAGAGTGTTGTATTGAAGAAGTGCTCTCTTTGA 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52716899080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5