BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48970.1
Length=622
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485255 jgi|Araly1|485255|fgenesh2_kg.5__1247__AT3G48970.1 813 0.0
> Ahg485255 jgi|Araly1|485255|fgenesh2_kg.5__1247__AT3G48970.1
Length=546
Score = 813 bits (440), Expect = 0.0
Identities = 513/548 (94%), Gaps = 5/548 (1%)
Strand=Plus/Plus
Query 63 ATTGAGTTTTTAAGATCATGTCTATGACAGTGGAGATAAGAGTTCCAAACTTGGATTGTG 122
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATTGAGTTTTTAAGATCATGTCTATGTCAGTGGAGATAAGAGTTCCAAACTTGGATTGTG 60
Query 123 AAGGATGTGCTTCTAAGCTTAGGAAGACTCTACTCAAGCTTAAAGGAGTGGAAGAAGTGG 182
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 61 AAGGATGTGCTTCTAAGCTTAAGAAGACTCTACTCAAGCTAAAAGGAGTGGAAGAAGTGG 120
Query 183 AAGTAGAGATGGAAACCCAAAAAGTGACGGCTCGAGGATACCGGTTAGAGGAAAAGAAGG 242
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 AAGTAGAGATGGAAACCCAAAAAGTGACGGCTCGAGGATACCGGTTAGAGGAGAAGAAGG 180
Query 243 TATTGAAAGCGGTACGACGTGCCGGTAAGGCAGCTGAACTGTGGCCATACCGGTTAGGTA 302
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
Sbjct 181 TATTGAAAGCGGTACGACGGGCCGGTAAGGCAGCTGAATTGTGGCCATACCGGTTAGGCA 240
Query 303 ATAGCCATTTTGCCTCTTTCTATAAATATCCTTCTTACGTGACCAACCACTATTACTCTG 362
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 241 ATAGCCATTTTGCCTCTTTCTATAAGTATCCTTCTTATGTGACCAACCACTATTACTCTG 300
Query 363 ATGCACACCGTACGGATCCCACCGGTGGTGTCCACACTTTCTTCCACACTCCCGCGGATT 422
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||
Sbjct 301 ATGCACACCGTACGGATCCCACTGGTGGTGTCCACACTTTTTTCCACACTCCCGCGGTTT 360
Query 423 ACTCGGTTGCTGTGGCTGGAGATGAGATCGCGGCTTCGATGTTTAGCGATGATAATCCCC 482
|||| ||||| ||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 361 ACTCCGTTGCGGTGGCCGGGGATGAGATCGCGGCTTCGATGTTTAGTGATGATAATCCCC 420
Query 483 ATGCTTGTACTATTATGTAGTCTTTTAGTATA-CAAAAATATGTTTTCAGTTCATCTT-C 540
|||||||||| |||||||| | |||| | || ||||| ||| ||||| ||| ||||| |
Sbjct 421 ATGCTTGTACCATTATGTAATTTTTTTTTCTAACAAAA-TATTTTTTCTGTTTATCTTTC 479
Query 541 -TTCGTCCAAATTTGATTTGATGTGAttttttttGTACAACTAATGTTGGAATGAGAAAG 599
|| ||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 480 CTT-GTCCAAATTTGATGTGATGTGATTTTTTTTGTATAACCAATGTTGGAATGAGAAAG 538
Query 600 TAAAATAT 607
|||| |||
Sbjct 539 TAAACTAT 546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22759381449
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5