BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48980.1
Length=1815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485256 jgi|Araly1|485256|fgenesh2_kg.5__1248__AT3G48980.1 2699 0.0
Ahg941909 jgi|Araly1|941909|scaffold_602453.1 1022 0.0
> Ahg485256 jgi|Araly1|485256|fgenesh2_kg.5__1248__AT3G48980.1
Length=1782
Score = 2699 bits (1461), Expect = 0.0
Identities = 1679/1786 (94%), Gaps = 7/1786 (0%)
Strand=Plus/Plus
Query 1 ATGATGAGGAACTCGCCGTCATATACCTCTGCAACG-CACTCTCGTAATTTCGACACCAT 59
||||||||||||||||||||||||| ||||| | | || |||||||||||||| |||||
Sbjct 1 ATGATGAGGAACTCGCCGTCATATAGCTCTG-GAGGACATTCTCGTAATTTCGATACCAT 59
Query 60 TTTGTCTCCACTCGTCAAAACCGGCACCGGTGCTTCTAACCGATCCTACGccttcttctc 119
|| |||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 60 TTGGTCTCCACTCGTAAAAACCGGCACCGGTGCTTCCAACCGATCCTACGCTTTCTTCTC 119
Query 120 catctttctcttcctcctcctcggcgcgtttctctccacgcgcctcctcctcgatccc-t 178
| |||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 120 CCTCTTCCTCTTCCTCCTCCTCGGCGCGTTCCTCTCCACGCGCCTCCTCCTCGA-CCCTT 178
Query 179 ccGTTTTGATAGAGAAAGAAGCGGTGTCCGTGACTGAGAGAGAAACCACTC-AATCCCCA 237
|||||||||||||||||||| ||||||||||||||||||||| ||| || | ||||||||
Sbjct 179 CCGTTTTGATAGAGAAAGAAACGGTGTCCGTGACTGAGAGAGGAACGAC-CGAATCCCCA 237
Query 238 GAATACCCTCAGTCGACTAAGCTAATTACGGAAAAACCAAAAGAGTTTACGCTAAACTGC 297
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 238 AAATACCCTCAGTCGAGTAAGCTAATTACGGAAAAACCAAAAGAGTTCACGCTAAACTGC 297
Query 298 GCTGCTTTCTCCGGCAACGACACTGGAACTTGCCCAAAGGACAATTATCCGACGAGTTTC 357
|| | |||| |||| |||||||||| ||||||||||||| |||| |||||||||||||||
Sbjct 298 GCCGGTTTCGCCGGTAACGACACTGTAACTTGCCCAAAGAACAACTATCCGACGAGTTTC 357
Query 358 CGATCTAGCGCCGGAGAAGGAGAATCTGACCGTTCTCCATCCGCCACGTGCCCAGATTAC 417
|| || |||||||| ||||| ||||| ||||||||||||||||||||||| || || ||
Sbjct 358 CGGTCCAGCGCCGGGGAAGGCGAATCAGACCGTTCTCCATCCGCCACGTGTCCTGACTAT 417
Query 418 TTCCGATGGATTCACGAGGATCTACGGCCATGGGAGAAGACCGGGATCACGAGGGAAGCC 477
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 418 TTCCGATGGATTCACGAGGATCTACGGCCATGGGAGAAGACAGGGATCACGAGGGAAGCC 477
Query 478 TTGGAGCGAGCCAATGCGACGGCGATTTTCCGCCTGGCGATTATCAACGGGAGAATCTAC 537
|||||||| |||||||||||||||| |||||| ||||| |||||||||||||| ||||||
Sbjct 478 TTGGAGCGCGCCAATGCGACGGCGAATTTCCGGCTGGCAATTATCAACGGGAGGATCTAC 537
Query 538 GTCGAGAAATTTCGTGAGGCTTTTCAGACAAGAGATGTGTTCACGATCTGGGGATTCGTA 597
|||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 538 GTCGAGAAGTTTCGTGAGGCTTTTCAGACGAGAGATGTTTTCACGATCTGGGGATTCGTA 597
Query 598 CAGCTCCTACGGAGATATCCGGGAAAGATTCCGGATCTCGAGCTCATGTTTGACTGCGTT 657
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CAGCTGTTACGGAGATATCCGGGAAAGATTCCGGATCTCGAGCTCATGTTTGACTGCGTT 657
Query 658 GACTGGCCGGTAGTGAAGGCGGCTGAATTCGCCGGAGTTGATCAACCTCCACCGCCGCCA 717
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 658 GACTGGCCGGTAGTGAAGGCGGCTGAATTCGCCGGAGTTGATCAACCTCCGCCGCCGCCA 717
Query 718 TTGTTCCGTTATTGCGCGAACGACGAGACGCTCGACATTGTATTTCCCGATTGGTCCTAT 777
|||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 718 TTGTTCCGTTATTGTGCTAACGACGAGACGCTCGACATTGTATTTCCTGATTGGTCCTAT 777
Query 778 TGGGGATGGGCTGAGGTGAATATAAAGCCATGGGAAAGTCTGTTGAAAGAACTAAGAGAA 837
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 778 TGGGGATGGGCTGAGGTGAATATAAAGCCATGGGAGAGTCTATTGAAAGAACTTAGAGAA 837
Query 838 GGAAACCAGAGGACTAAATGGATAGATAGAGAGCCTTATGCTTACTGGAAAGGGAATCCA 897
|| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 838 GGGAACCAGAGGACTAAATGGATAGACAGAGAACCTTATGCTTACTGGAAAGGGAATCCG 897
Query 898 ACGGTTGCTGAGACGAGACTTGATCTCATGAAATGTAATCTCTCCGAGGTGTATGACTGG 957
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 898 ACGGTTGCTGAGACGAGACTTGATCTCATGAAATGTAATCTCTCCGAGGAGTATGACTGG 957
Query 958 AAAGCTCGTTTGTACAAGCAGGACTGGGTCAAGGAATCAAAGGAAGGTTACAAGCAGTCA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AAAGCTCGTTTGTACAAGCAGGACTGGGTCAAGGAATCAAAGGAAGGTTACAAGCAGTCA 1017
Query 1018 GACTTGGCGAGCCAATGCCATCACAGGTACAAGATTTACATAGAAGGGTCTGCGTGGTCG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1018 GACTTGGCGAGCCAATGCCATCACAGGTACAAGATTTACATAGAAGGGTCTGCATGGTCG 1077
Query 1078 GTGAGTGAGAAGTACATTCTGGCTTGTGACTCGGTGACATTAATGGTGAAACCTCATTAC 1137
||||||||||||||||||||||| ||||||||||||||||| |||| ||||| ||||||
Sbjct 1078 GTGAGTGAGAAGTACATTCTGGCATGTGACTCGGTGACATTGCTGGTCAAACCACATTAC 1137
Query 1138 TACGATTTCTTCACAAGAGGTATGTTTCCAGGTCACCATTACTGGCCTGTCAAGGAGGAC 1197
||||||||||||||| |||||||||||||||| |||||||| ||||| |||| ||| |||
Sbjct 1138 TACGATTTCTTCACACGAGGTATGTTTCCAGGACACCATTATTGGCCCGTCATGGAAGAC 1197
Query 1198 GACAAATGCCGTTCCATCAAATTCGCTGTTGATTGGGGCAACTTGCATATGCGAAAGGCA 1257
||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1198 GACAAATGCCGCTCCATCAAATTCGCCGTTGATTGGGGCAACTTGCATATGCAAAAGGCA 1257
Query 1258 CAAGACATAGGTAAGAAGGCAAGTGAGTTTGTGCAACAAGAACTCAAGATGGACTATGTG 1317
|||||||| || |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1258 CAAGACATCGGGAAGAAGGCAAGTGAGTTTGTGCAACAAGAACTTAAAATGGACTATGTG 1317
Query 1318 TACGATTACATGTTTCATCTCTTAATCCAATACTCTAAACTCCTCCGGTTTAAACCCGAG 1377
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TACGATTACATGTTCCATCTCTTAATCCAATACTCTAAACTCCTCCGGTTTAAACCCGAG 1377
Query 1378 ATCCCTCAGAACTCCACTGAGCTCTGCTCAGAGGCAATGGCATGCCCGAGGGATGGAAAT 1437
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1378 ATCCCTCAGAACTCCACCGAGCTCTGCTCAGAGGCAATGGCGTGCCCGAGGGATGGAAAT 1437
Query 1438 GAACGAAAGTTTATGATGGAATCACTCGTAAAACGCCCAGCTGAGACAGGTCCCTGCGCC 1497
|| || |||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 1438 GAGCGGAAGTTTATGATGGAATCACTTGTGAAACGCCCAGCTGAGACCGGTCCCTGCGCC 1497
Query 1498 ATGCCGCCTCCGTATGATCCGGCATCATTTTATTCAGTTTTGAAAAGGAGACAGAGTACG 1557
|||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||
Sbjct 1498 ATGCCGCCTCCGTATGATCCAGCATCGTTTTACTCGGTTTTGAAAAGGAGACAGAGTACG 1557
Query 1558 ACTAGTAGAATCGAACAGTGGGAGAGTAAGTACTGGAGGAAGCAGAACAAGACCGGTTCG 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 ACTAGTAGAATCGAACAGTGGGAGAGTAAGTACTGGAGGAAGCAGAACAAGACCGGTTCG 1617
Query 1618 TAAAATTAGATTGGCGTATAAAGTTTTGGTGTGTAGAGTAAAAGCACTTGTCAGAATTGT 1677
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1618 TAAAATTAGATTGGCGTATAAAGTTTTGTTGTGTAGAGTAAAACCACTTGTCAGAATTGT 1677
Query 1678 ATCGAGTAGTATAAATTAGAAAACATGCGATCTTTATTTTCTTCTCCGtttttttGGTAG 1737
|||||||||||||| |||||||| ||||||| ||||||| || |||| |||| |||||
Sbjct 1678 ATCGAGTAGTATAACCTAGAAAACTTGCGATCATTATTTTATTTTCCGCCTTTT-GGTAG 1736
Query 1738 AATTTTAACTAATCCATTCTGTCTAGTGAATTCGACGATACAAAGT 1783
|||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1737 AATTCTAACTAATCCATTATGTCTAGTGAATTCGACGATACAAAGT 1782
> Ahg941909 jgi|Araly1|941909|scaffold_602453.1
Length=1675
Score = 1022 bits (553), Expect = 0.0
Identities = 1018/1241 (82%), Gaps = 38/1241 (3%)
Strand=Plus/Plus
Query 392 CTCCATCCGCCACGTGCCCAGATTACTTCCGATGGATTCACGAGGATCTACGGCCATGGG 451
||||| ||||||||| || ||||||||||| ||||| ||||||||||| || ||||||
Sbjct 426 CTCCAAACGCCACGTGTCCTGATTACTTCCGTTGGATCCACGAGGATCTCCGTCCATGGT 485
Query 452 AGAAG-ACCGGG-ATCACGAGGGAAGCCTTGGAGCGAGCCAATGCGACGGCGATTTTCCG 509
| || | |||| |||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 486 CG-AGTA-CGGGAATCACGAGGGAAGCATTGGAGCGAGCCAAAAAGACGGCGAATTTCCG 543
Query 510 CCTGGCGATTATCAACGGGAGAATCTACGTCGAGAAATTTCGTGAGGCTTTTCAGACAAG 569
|| ||||| ||| |||||| ||| ||||| ||||| |||| || || |||||||| ||
Sbjct 544 GCTAGCGATCATCGACGGGAAAATTTACGTAGAGAAGTTTCAAGATGCGTTTCAGACGAG 603
Query 570 AGATGTGTTCACGATCTGGGGATTCGTACAGCTCCTACGGAGATATCC-GGGAAAGATTC 628
||| |||||||| || ||||||||| ||||||| || | | ||| || ||| |||||||
Sbjct 604 AGACGTGTTCACCATTTGGGGATTCTTACAGCTTTTAAGAAAATACCCTGGG-AAGATTC 662
Query 629 CGGATCTCGAGCTCATGTTTGACTGCGTTGACTGGCCGGTAGTGAAGGCGGCTGAATTCG 688
| |||||||||||||||||||||||||||||||||||||| || || || | |||||||
Sbjct 663 CAGATCTCGAGCTCATGTTTGACTGCGTTGACTGGCCGGTCGTTAAAGCTTCAGAATTCG 722
Query 689 CCGGAGTTGAT-CAACC-TCCACCGCCGCCATTGTTCCGTTATTGCGCGAACGACGAGAC 746
|||||| | || | || || || ||||| |||| || || |||| ||| || |||||
Sbjct 723 CCGGAGCTAATGCG-CCGTCG-CCTCCGCCGCTGTTTCGGTACTGCGGGAATGAGGAGAC 780
Query 747 GCTCGACATTGTATTTCCCGATTGGTCCTATTGGGGATGGGCTGAGGTGAATATAAAGCC 806
||| || || || ||||| |||||||||| |||||||||||| |||||||||||||||||
Sbjct 781 GCTTGATATCGTGTTTCCTGATTGGTCCTTTTGGGGATGGGCGGAGGTGAATATAAAGCC 840
Query 807 ATGGGAAAGTCTGTTGAAAGAACTAAGAGAAGGAAACCAGAGGACTAAATGGATAGATAG 866
|||||| ||| ||||||| |||||||||||||| || |||||||||||||||||| | ||
Sbjct 841 ATGGGAGAGTTTGTTGAAGGAACTAAGAGAAGGGAATCAGAGGACTAAATGGATAAACAG 900
Query 867 AGAGCCTTATGCTTACTGGAAAGGGAATCCAACGGTTGCTGAGACGA-GACTTGATCTCA 925
||||||||||||||| |||||||| ||||||| ||| || ||||| | ||| ||||| |
Sbjct 901 AGAGCCTTATGCTTATTGGAAAGGTAATCCAATGGTCGCAGAGAC-ACGACAAGATCTTA 959
Query 926 TGAAATGTAATCTCTCCGAGGTGTATGACTGGAAAGCTCGTTTGTACAAGCAGGACTGGG 985
||||||||||| |||| |||| | || ||||| |||||||| || ||||| |||
Sbjct 960 TGAAATGTAATGTCTCTGAGGAACACGAGTGGAACGCTCGTTTATATGTTCAGGATTGGA 1019
Query 986 TCAAGGAATCAAAGGAAGGTTACAAGCAGTCAGACTTGGCGAGCCAATGCCATCACAGGT 1045
|||| |||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||
Sbjct 1020 TCAAAGAATCAAAGGAAGGCTACAAGCAATCAGATTTGGCAAGCCAATGCCATCACAGGT 1079
Query 1046 ACAAGATTTACATAGAAGGGTCTGCGTGGTCGGTGAGTGAGAAGTACATTCTGGCTTGTG 1105
||||||| || |||||||||||||| ||||| ||||| |||||||||||| |||| ||||
Sbjct 1080 ACAAGATATATATAGAAGGGTCTGCATGGTCAGTGAGCGAGAAGTACATTTTGGCGTGTG 1139
Query 1106 ACTCGGTGACAT-TAATGGTGAAACCTCATTACTACGATTTCTTCACAAGAGG-TATGTT 1163
|||| |||| | | ||||||||||||||||||| ||||||||||| |||| | || |
Sbjct 1140 ACTCTGTGAG-TCTGTTGGTGAAACCTCATTACTATGATTTCTTCACCCGAGGCT-TGCT 1197
Query 1164 TCCAGG-TCACCATTACTGGCCTGTCAAGGAGGACGACAAATGCCGTTCCATCAAATTCG 1222
||| || ||||||||| ||||| || | |||| |||| || || || || |||||||| |
Sbjct 1198 TCC-GGCTCACCATTATTGGCCCGTTAGGGAGCACGATAAGTGTCGCTCTATCAAATTTG 1256
Query 1223 CTGTTGATTGGGGCAACT-TGCATATGCGAAAGGCACAAGACATAGGTAAGAAGGCAAGT 1281
||||||||||||| |||| | || || | ||||||||| || || || ||| ||| ||
Sbjct 1257 CTGTTGATTGGGGAAACTCT-CACATTCAAAAGGCACAGGATATTGGAAAGGCGGCGAGC 1315
Query 1282 GAGTTTG-TGCAACAAGAACTCAAGATGGACTATGTGTACGATTACATGTTTCATCTCTT 1340
|| ||| | ||||||||||||||||||||||| ||||| |||||||||| ||||| ||
Sbjct 1316 GA-TTTCATCCAACAAGAACTCAAGATGGACTACGTGTATGATTACATGTACCATCTTTT 1374
Query 1341 AATCC-AATACTCTAAACTCCTCCGGTTTAAACCCGAGATCCCTCAGAACT-CCACTG-A 1397
|| || |||||||||||||||||||||||||||| ||||| |||||||| | || || |
Sbjct 1375 AA-CCGAATACTCTAAACTCCTCCGGTTTAAACCTGAGATTCCTCAGAA-TGCCG-TGGA 1431
Query 1398 GCTCTGCTCAGAGGCAATGGCATGCCCGAGG-GATGGAAATGAACGAAAGTTTATGATGG 1456
| | || || || ||||||| || ||||| | |||| ||| || ||||| |||| ||
Sbjct 1432 GATTTGTTCGGAAACAATGGCGTGTCCGAGAAGCGGGAA-TGAGCGGAAGTTCATGACGG 1490
Query 1457 AATCACTCGTAAAACGCCCAGCTGAGACAGGTCCCTGCGCCATGCCGCCTCCGTATGATC 1516
||||| | ||||| | ||| || ||| | ||||| || |||||||||||||||||| |||
Sbjct 1491 AATCATTTGTAAAGCACCCTGCGGAGTCTGGTCCGTGTGCCATGCCGCCTCCGTATAATC 1550
Query 1517 CGGCATCAT-TTTATTCAGTTTTGAAAAGGAGACAGAGTACGACTA-GTAGAATCGAACA 1574
||||||| | ||||| ||| |||| |||| ||||||||| | || | |||||| |||
Sbjct 1551 CGGCATC-TCTTTATGGGGTTGTGAAGAGGAAACAGAGTACTAATATG-AGAATCCTACA 1608
Query 1575 GTGGGAGA-GTAAGTACTGGAGGAAGCAGAA-CAAGACCGG 1613
|||||||| | ||||||||||| |||||||| ||| |||||
Sbjct 1609 GTGGGAGATG-AAGTACTGGAGCAAGCAGAATCAA-ACCGG 1647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68143448305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5