BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49000.1
Length=1914
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485258 jgi|Araly1|485258|fgenesh2_kg.5__1250__AT3G49000.1 2477 0.0
Ahg327116 jgi|Araly1|327116|fgenesh1_pm.C_scaffold_6002336 2399 0.0
> Ahg485258 jgi|Araly1|485258|fgenesh2_kg.5__1250__AT3G49000.1
Length=1627
Score = 2477 bits (1341), Expect = 0.0
Identities = 1537/1631 (94%), Gaps = 15/1631 (1%)
Strand=Plus/Plus
Query 203 ATGTCTATGTCTGAGTTTGGCATTGTCTACGCCATCCATATCATCACCGTCCAATTCGGC 262
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGCTATGTCTGAGTTTGGCATTGTCTACGCCGTCCATATCATCACCGTCCAATTCGGC 60
Query 263 TCCGTCGTCTCGAAAGTTTGTGAATGTCTTCTACGTAAAGGACCTCTTTCCTCACGAGAC 322
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCGTCGTATCGAAAGTTTGCGAATGTCTTCTACGTAAAGGACCTCTTTCCTCACGAGAC 120
Query 323 ATCTCTCGTTTAGCTGAATCAGATATCAACCATAACAAAGTTAAAGATATTCTCTATCTC 382
||||||||||||||||||||||| ||||| |||||| ||||||||| |||||||||||||
Sbjct 121 ATCTCTCGTTTAGCTGAATCAGACATCAATCATAACCAAGTTAAAGCTATTCTCTATCTC 180
Query 383 TTGATTCAGCACAATTGTGTTCAAGCTTTCTCCATTGAACCTCCTGATGGTTCTGAGAGC 442
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 181 TTGATTCAGCACAATTGTGTTCAAGCTTTCTCTATTGAACCTCCTGATGGTTCCGAGAGC 240
Query 443 AAAGCTATTGTACAGTATATTGTGTTGTTTAACAACATTCTGCATCGTGTGAGGTATAAC 502
||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 241 AAAGCAATTGTACAGTATATTGTGCTGTTTAACAACATTTTGCATCGTGTGAGGTATAAC 300
Query 503 AAGTTTTCGAGGATTGTAAACGAAGAACTTGACTCCAAGTGCGGTGCAGTTCTTGATGGT 562
|||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 301 AAGTTTTCGAGGCTTGTAAACGAAGAACTTGGCTCTGAGTGCGGTGCAGTTCTTGATGGT 360
Query 563 TTACTTAGTAACGGTAGGCTTACCTTGGGACAGTTTATTGAAAGAGATAGAGATTCAGGA 622
||||||||||||||||||||||||||||||||| | ||||||||||| |||| |||||||
Sbjct 361 TTACTTAGTAACGGTAGGCTTACCTTGGGACAGCTGATTGAAAGAGACAGAGGTTCAGGA 420
Query 623 AATACGATAGGTTCTGAAGCAATCAGAGATTCTCTTCAGAAATTGGTTGCTGCCCGTTTT 682
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 AAAACGATAGGTTCTGAAGCAATTAGAGATTCTCTTCAGAAATTGGTTGCTGCCCGTTTT 480
Query 683 GTTGAGCGCATTCCTTCTCCCGAACCTGTTCTTGGAAACAAAGAAAAAGAGCCGGCAAAG 742
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 481 GTTGAGCGCATTCCTTCTCCCGAACCTGTGCTTGGAAACAAAGAACAAGAGCCGGCAAAG 540
Query 743 AGAAGAGGCGCTAAAGCTGCCAAGATTCTTAAAGAACCAGAAACCTTGGAGGAACAAGTT 802
| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct 541 AAAAGAGGCGCTAAAGCTGCCAAGATTCTCAAAGAACCGGAAACCTTGGAGGAACGTGTT 600
Query 803 GTTGAAGCAGCAACTCCAGTTGACGCAATAAGGTTTCCACTTATATTCGAAGAAGATTCC 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 601 GTTGAAGCAGCAACTCCAGTTGACGCAATAAGGTTTCCACTTATATTCGAAGAAGATGCC 660
Query 863 AATTCATCTTTAGCAGATGACAATAGCAACATCACTGAGGGGAAGCGTAAACAACGTGAT 922
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 661 AATTCATCTTTAGCAGATGACGATAGCAACATCACTGAGGGGAAGCGTAAACAACGTGAT 720
Query 923 GTGGACACATCAGATTCGAGCAGTGGAGTAATTTGGCGTCCTAATTTTGAGGAGTTCATC 982
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTGGACTCATCAGATCCGAGCAGTGGAGTAATTTGGCGTCCTAATTTTGAGGAGTTCATC 780
Query 983 CACCGCCTTAGACATAAGGCGTGTGTGGAGATAGTGAAAGAGCGCCGGGATGAAGGATGT 1042
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 781 CACCGCCTTAGACATAAGGCGTGTGTGGAGATTGTGAAAGAGCGCAGGGATGAAGGATGT 840
Query 1043 GCCATTGTCTTGAGGGCAATGTTAGAAGTAGGAAGATCGCAAGAGAAGAAGGTGAAAACA 1102
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 841 GCCATTGTCTTGAGGGCAATGTTAGAAGTAGGAAGATCACAGGAGAAGAAGGTGAAAACA 900
Query 1103 GACAATTCGGCTCCAATGTCAGTTGGTTCCATTTATGAAGAAGTTATTAAGACAGAAGCA 1162
||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||
Sbjct 901 GACAATTCGGCTCCAATGTCAATCGGTTCCATTTATGAAGAGGTTATAAAGACAGAAGCA 960
Query 1163 GGTCGCACTATGTTACAAGAGCGAGTTGAAGCATGCCTTGACCAATTGAGTGCTACGTCT 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GGTCGCACTATGTTACAAGAGCGAGTTGAAGCATGCCTTGACCAATTGAGTGCTACGTCT 1020
Query 1223 TCTTATCTACCAGCATTTGTGAAC-GAAGTGAATGATTCATACATAGTTGATTATAAATC 1281
||||||||||||||||||||| || ||| |||||||||||||||||||||||| ||||||
Sbjct 1021 TCTTATCTACCAGCATTTGTG-ACAGAAATGAATGATTCATACATAGTTGATTTTAAATC 1079
Query 1282 CATTATCAGCGTAGCACAGAAAGATGAGATAGAGGCAGTAGTGATGAGAAGATATGGGAA 1341
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1080 CATTATCAGCGTAGCACAGAAAGATGAGATAGAAGCAGTAGTTATGAGAAGATATGGGAA 1139
Query 1342 AGAAGCTTTCAGAATGTTCAGATACTTATCACAGGAAGGGCGTTTTGTTGAGACCGATAA 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AGAAGCTTTCAGAATGTTCAGATACTTATCACAGGAAGGGCGTTTTGTTGAGACCGATAA 1199
Query 1402 GATTGCTGATGCCGCGCTGACTGAAAAGAAAGATACACCGCAATTCCTTTTAAAGATGTG 1461
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1200 GATTGCTGATGCCGCGCTGACTGAAAAGAAAGACACACCGCAATTCCTTTTGAAGATGTG 1259
Query 1462 GAAAGACGGATACTTACATATGCAGAAATTGGCGGTCACAGCTCCGGGTATGTATACACC 1521
|||||||||||||||||||||||||||||||||| |||| | | || |||||| | |
Sbjct 1260 GAAAGACGGATACTTACATATGCAGAAATTGGCGATCACGGGTACG--TATGTA--C-C- 1313
Query 1522 GTTTCTGTTGTGGAAGGTAAACAAGTTGATTGTGACAACTCAAATGTTGGATGAGATGTA 1581
|||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||
Sbjct 1314 GTTTCTGTTGTGGAAGGTAAACAAGTTGATTGTGACTAGGCAAATGTTAGATGAAATGTA 1373
Query 1582 CCATGCGTCCCTTAACTTGAGTCTTAGGTTGGCCCATGAGTTAGAAGCCGAAAAAGAGTT 1641
||||| || |||||||||| ||| |||||||| |||||||||||| |||||||||||||
Sbjct 1374 TCATGCTTCACTTAACTTGAATCTCAGGTTGGCTCATGAGTTAGAATCCGAAAAAGAGTT 1433
Query 1642 GCTGTTGTTGCCATTAGATAAACTGGAAGGACCATTAAAGGAGAGACTGAAAAAGGTCAA 1701
|||| ||||||||| ||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1434 GCTGATGTTGCCATCAGATAAACTGGAAGGACCATTAAAGGAGAGAGTGATCAAGGTCAG 1493
Query 1702 AGCCAAGAGGCTGTTACTCTCTTCCACTATGTTTAAACTTGATGATGCCATTATGCTTTT 1761
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1494 AGCCAAGAGGCTGTTACTCTCTTCCACTATGTTTAAACTTGATGATGCGATTATGCTATT 1553
Query 1762 TCATGACTTTTAAACTCATACATTCAAAA--A---CTA-ATTTC-TTTTGGTCGATTTAG 1814
||| ||||||||||||| || ||| |||| | || |||| |||| ||||||||||
Sbjct 1554 TCACGACTTTTAAACTCTTAAATTGAAAATCATTTCTTTATTTTGTTTTAGTCGATTTAG 1613
Query 1815 TTCACATTGTC 1825
|||||||||||
Sbjct 1614 TTCACATTGTC 1624
> Ahg327116 jgi|Araly1|327116|fgenesh1_pm.C_scaffold_6002336
Length=1566
Score = 2399 bits (1299), Expect = 0.0
Identities = 1483/1573 (94%), Gaps = 8/1573 (1%)
Strand=Plus/Plus
Query 203 ATGTCTATGTCTGAGTTTGGCATTGTCTACGCCATCCATATCATCACCGTCCAATTCGGC 262
||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||
Sbjct 1 ATGGCTATGTCTGAGTTTGGCATTGTCTATGCCGTCCATATCATCACTGTCCAATTCGGC 60
Query 263 TCCGTCGTCTCGAAAGTTTGTGAATGTCTTCTACGTAAAGGACCTCTTTCCTCACGAGAC 322
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 61 TCCGTCGTATCGAAAGTTTGCGAATGTCTTCTACGTAAAGGACCTCTTTCCTCGCGAGAC 120
Query 323 ATCTCTCGTTTAGCTGAATCAGATATCAACCATAACAAAGTTAAAGATATTCTCTATCTC 382
|||||||||||||||||||| |||||||| |||||| |||||||||||||||| ||||||
Sbjct 121 ATCTCTCGTTTAGCTGAATCCGATATCAATCATAACCAAGTTAAAGATATTCTTTATCTC 180
Query 383 TTGATTCAGCACAATTGTGTTCAAGCTTTCTCCATTGAACCTCCTGATGGTTCTGAGAGC 442
||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 181 TTGATTCAGCATAATTGTGTTCAAGCTTTCTCTATTGAACCACCTGATGGTTCTGAGAGC 240
Query 443 AAAGCTATTGTACAGTATATTGTGTTGTTTAACAACATTCTGCATCGTGTGAGGTATAAC 502
||||| |||||||| ||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 241 AAAGCAATTGTACAATATATTGTGCTATTTAACAACATTTTGCATCGTGTGAGGTATAAC 300
Query 503 AAGTTTTCGAGGATTGTAAACGAAGAACTTGACTCCAAGTGCGGTGCAGTTCTTGATGGT 562
||||||||||||||||| || |||||||||| ||| ||||||| |||||||||||||||
Sbjct 301 AAGTTTTCGAGGATTGTGAATGAAGAACTTGGCTCTGAGTGCGGCGCAGTTCTTGATGGT 360
Query 563 TTACTTAGTAACGGTAGGCTTACCTTGGGACAGTTTATTGAAAGAGATAGAGATTCAGGA 622
||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 361 TTACTTAGTAACGGTAGGCTTACCTTGGGACAGCTAATTGAAAGAGACAGAGATTCAGGA 420
Query 623 AATACGATAGGTTCTGAAGCAATCAGAGATTCTCTTCAGAAATTGGTTGCTGCCCGTTTT 682
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGACGATAGGTTCTGAAGCAATCAGAGATTCTCTTCAGAAATTGGTTGCTGCCCGTTTT 480
Query 683 GTTGAGCGCATTCCTTCTCCCGAACCTGTTCTTGGAAACAAAGAAAAAGAGCCGGCAAAG 742
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 481 GTTGAGCGCATTCCTTCTCCCGAACCTGTTCTTGGTAACAAAGACCAAGAGCCGGCAAAG 540
Query 743 AGAAGAGGCGCTAAAGCTGCCAAGATTCTTAAAGAACCAGAAACCTTGGAGGAACAAGTT 802
| |||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||
Sbjct 541 AAAAGAGGCGCTAAAGCTGCCAAGATTCTTAAAGAACCGGAAACCTTGGAAGAACGTGTT 600
Query 803 GTTGAAGCAGCAACTCCAGTTGACGCAATAAGGTTTCCACTTATATTCGAAGAAGATTCC 862
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 601 GTTGAAGCAGCAACTCCAGTTGACGCAATAAGGTTTCCACTTATATTTGAAGAAGATTTC 660
Query 863 AATTCATCTTTAGCAGATGACAATAGCAACATCACTGAGGGGAAGCGTAAACAACGTGAT 922
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 661 AATTCTTCTTTAGCAGATGACGATAGCAACATCACTGAGGGGAAGCGTAAACAACGTGAT 720
Query 923 GTGGACACATCAGATTCGAGCAGTGGAGTAATTTGGCGTCCTAATTTTGAGGAGTTCATC 982
|||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 721 GTGGACTCATCAGATCCGAGCAGTGGAGTAATTTGGCGTCCCAATTTTGAGGAGTTCATC 780
Query 983 CACCGCCTTAGACATAAGGCGTGTGTGGAGATAGTGAAAGAGCGCCGGGATGAAGGATGT 1042
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 781 CACCGCCTTAGACATAAGGCGTGTGTGGAGATCGTGAAAGAGCGCAGGGATGAAGGATGT 840
Query 1043 GCCATTGTCTTGAGGGCAATGTTAGAAGTAGGAAGATCGCAAGAGAAGAAGGTGAAAACA 1102
|||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 841 GCCATTGTCTTGAGGGCAATGTTAGAAGTAGGAAGACCACAGGAGAAGAAGGTGAAAACA 900
Query 1103 GACAATTCGGCTCCAATGTCAGTTGGTTCCATTTATGAAGAAGTTATTAAGACAGAAGCA 1162
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 901 GACAATTCGGCTCCAATGTCAGTTGGTTCCATTTATGAAGAGGTTATAAAGACAGAAGCA 960
Query 1163 GGTCGCACTATGTTACAAGAGCGAGTTGAAGCATGCCTTGACCAATTGAGTGCTACGTCT 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GGTCGCACTATGTTACAAGAGCGAGTTGAAGCATGCCTTGACCAATTGAGTGCTACGTCT 1020
Query 1223 TCTTATCTACCAGCATTTGTGA-ACGAAGTGAATGATTCATACATAGTTGATTATAAATC 1281
|||||||||||||||||||||| | ||| |||||||||||||||||||||||| ||||||
Sbjct 1021 TCTTATCTACCAGCATTTGTGACA-GAAATGAATGATTCATACATAGTTGATTTTAAATC 1079
Query 1282 CATTATCAGCGTAGCACAGAAAGATGAGATAGAGGCAGTAGTGATGAGAAGATATGGGAA 1341
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1080 CATTATCAGCGTAGCACAGAAAGATGAGATAGAAGCAGTAGTTATGAGAAGATATGGGAA 1139
Query 1342 AGAAGCTTTCAGAATGTTCAGATACTTATCACAGGAAGGGCGTTTTGTTGAGACCGATAA 1401
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1140 AGAAGCTTTCAGAATGTTCAGATACTTATCACAGGAAGGGCGTTTTGTTGACACCGATAA 1199
Query 1402 GATTGCTGATGCCGCGCTGACTGAAAAGAAAGATACACCGCAATTCCTTTTAAAGATGTG 1461
||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct 1200 GATTGCTGATGCCGCGCTGACTGAAAAGAAAGACACACCGCAAATCCTTTTGAAGATGTG 1259
Query 1462 GAAAGACGGATACTTACATATGCAGAAATTGGCGGTCACAGCTCCGGGTATGTATACACC 1521
|||||||||||||||||||||||||||||||||| |||| | | || |||||| | |
Sbjct 1260 GAAAGACGGATACTTACATATGCAGAAATTGGCGATCACGGGTACG--TATGTA--C-C- 1313
Query 1522 GTTTCTGTTGTGGAAGGTAAACAAGTTGATTGTGACAACTCAAATGTTGGATGAGATGTA 1581
|||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||
Sbjct 1314 GTTTCTGTTGTGGAAGGTAAACAAGTTGATTGTGACGAGGCAAATGTTAGATGAAATGTA 1373
Query 1582 CCATGCGTCCCTTAACTTGAGTCTTAGGTTGGCCCATGAGTTAGAAGCCGAAAAAGAGTT 1641
||||| || |||||||||| ||| |||||||| |||||||||||| |||||||||||||
Sbjct 1374 TCATGCTTCACTTAACTTGAATCTCAGGTTGGCTCATGAGTTAGAATCCGAAAAAGAGTT 1433
Query 1642 GCTGTTGTTGCCATTAGATAAACTGGAAGGACCATTAAAGGAGAGACTGAAAAAGGTCAA 1701
|||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1434 GCTGATGTTGCCATCAGATAAACTGGAAGGACCATTAAAGGAGAGAGTGAAAAAGGTCAG 1493
Query 1702 AGCCAAGAGGCTGTTACTCTCTTCCACTATGTTTAAACTTGATGATGCCATTATGCTTTT 1761
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1494 AGCCAAGAGGCTGTTACTCTCTTCCACTATGTTTAAACTTGATGATGCGATTATGCTATT 1553
Query 1762 TCATGACTTTTAA 1774
||| |||||||||
Sbjct 1554 TCACGACTTTTAA 1566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71914382560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5