BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49010.1
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347994 jgi|Araly1|347994|fgenesh1_pg.C_scaffold_5001386 992 0.0
Ahg489251 jgi|Araly1|489251|fgenesh2_kg.6__2385__AT5G23900.1 577 6e-164
Ahg942682 jgi|Araly1|942682|scaffold_603226.1 355 3e-97
> Ahg347994 jgi|Araly1|347994|fgenesh1_pg.C_scaffold_5001386
Length=621
Score = 992 bits (537), Expect = 0.0
Identities = 593/621 (95%), Gaps = 0/621 (0%)
Strand=Plus/Plus
Query 69 ATGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTC 128
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGAAGCACAACAATGTCATCCCTAATGGTCACTTCAAAAAGCACTGGCAGAACTATGTA 60
Query 129 AAGACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTGCGAGGCAAAAGAAG 188
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGACATGGTTTAACCAGCCTGCTAGGAAAACCAGAAGAAGAATTGCGAGGCAAAAGAAG 120
Query 189 GCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTCTCCGCCCTGTTGTGCATGGTCAG 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTCTCCGCCCTGTTGTGCATGGTCAG 180
Query 249 ACTCTTAAGTACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAG 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACTCTTAAGTACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAG 240
Query 309 GCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGACCATCGTCGC 368
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 241 GCTGCTGGTATCCCAAAGAAGTTGGCTCCTACAATCGGTATTGCTGTTGACCATCGTCGC 300
Query 369 AAGAACCGATCTTTGGAGGGTCTTCAAACAAATGTCCAGAGGCTGAAAACCTACAAGACC 428
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 AAGAACCGATCTTTGGAGGGTCTTCAAACCAATGTCCAGAGGCTGAAAACCTACAAGACT 360
Query 429 AAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGGCTGGTGACTCTACACCAGAA 488
||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 361 AAGTTGGTCATCTTCCCGCGTCGTGCTCGCAAGGTTAAGGCTGGTGACTCTACACCAGAA 420
Query 489 GAGTTGGCTAATGCTACCCAAGTTCAAGGAGACTACTTGCCTATTGTACGTGAGAAGCCT 548
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 GAGTTGGCTAATGCTACCCAAGTTCAAGGAGACTACTTGCCTATTGTACGCGAGAAGCCA 480
Query 549 ACCATGGAACTCGTCAAGCTGACTTCAGAAATGAAGTCTTTCAAGGCTTTTGACAAGATA 608
|||||||| ||||||||||||||||||||||||||||| |||||||| | ||| ||||||
Sbjct 481 ACCATGGAGCTCGTCAAGCTGACTTCAGAAATGAAGTCCTTCAAGGCGTATGATAAGATA 540
Query 609 CGCCTTGAGCGCACTAACAAGAGGCATGCCGGAGCTAGAGCCAAGAGAGCCGCAGAGGCT 668
|| ||||||||||| |||||||| ||||| || |||||||||||||||||| | ||||||
Sbjct 541 CGTCTTGAGCGCACGAACAAGAGACATGCTGGTGCTAGAGCCAAGAGAGCCTCCGAGGCT 600
Query 669 GAGAAAGAAGAGAAGAAGTGA 689
|||||||||||||||||||||
Sbjct 601 GAGAAAGAAGAGAAGAAGTGA 621
> Ahg489251 jgi|Araly1|489251|fgenesh2_kg.6__2385__AT5G23900.1
Length=782
Score = 577 bits (312), Expect = 6e-164
Identities = 526/629 (84%), Gaps = 16/629 (3%)
Strand=Plus/Plus
Query 67 AAATGAAGCACAACAATGTTATCCCCAATGGT--CAC-TTCAAAAAGCACTGGCAGAATT 123
|||||||||||||||| ||||| ||| | | | ||| ||| ||||| ||||||||||
Sbjct 2 AAATGAAGCACAACAACGTTAT-CCCGA-GCTCACACTTTC-GCAAGCATTGGCAGAATT 58
Query 124 ATGTCAAGACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTGCGAGGCAAA 183
|||||||||| ||||| ||||| |||||||||||||| || ||| | |||| || || |
Sbjct 59 ATGTCAAGACTTGGTTTAACCAACCTGCCAGGAAAACAAGGAGACGTGTTGCTAGACAGA 118
Query 184 AGAAGGCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTCTCCGCCCTGTTGTGCATG 243
|||||||||||||||||||||||||||| || ||||| |||||||| |||||||| ||||
Sbjct 119 AGAAGGCTGTGAAGATCTTCCCTCGTCCCACCTCTGGTCCTCTCCGACCTGTTGTTCATG 178
Query 244 GTCAGACTCTTAAGTACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGC 303
||||||||||||||||||||||||| || ||| | || ||||||||||||||||||||||
Sbjct 179 GTCAGACTCTTAAGTACAACATGAAAGTTAGAGCTGGAAAAGGATTCACTCTTGAAGAGC 238
Query 304 TCAAGGCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGACCATC 363
| ||| ||||||||||||||||||||||||| || ||||| || ||| | ||||| || |
Sbjct 239 TTAAGACTGCTGGTATCCCAAAGAAGTTGGCTCCAACAATCGGAATTTCAGTTGATCACC 298
Query 364 GTCGCAAGAACCGATCTTTGGAGGGTCTTCAAACAAATGTCCAGAGGCTGAAAACCTACA 423
||||||||||||| |||||||||||||||||| | ||||| || ||| |||| || ||||
Sbjct 299 GTCGCAAGAACCGTTCTTTGGAGGGTCTTCAATCCAATGTTCAAAGGTTGAAGACTTACA 358
Query 424 AGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGGCTGGTGACTCTACAC 483
|| | ||||| || | ||||| || ||| |||| || |||||||||||||| ||||| |
Sbjct 359 AGGCTAAGTTGGTTGTGTTCCCTCGCCGTTCCCGTAAAGTCAAGGCTGGTGATTCTACTC 418
Query 484 CAGAAGAG-TTGGCTAATGCTACCCAAGTTCAAGGAGACTACTTGCCTATTG-TACGTGA 541
|||| ||| ||| |||||||||||||||| ||||| || ||| ||||||||| || ||||
Sbjct 419 CAGAGGAGCTTG-CTAATGCTACCCAAGTCCAAGGTGATTACATGCCTATTGCTA-GTGA 476
Query 542 GAAGCCTA-CCATGGAACTCGTCAAGCTGACTTCAGAAATGAAGTCTTTCAAGGCTTTTG 600
|||| | | ||||||| || || ||||| ||| | || |||||| | |||||||| | ||
Sbjct 477 GAAGGC-AGCCATGGAGCTTGTGAAGCTTACTGCGGATATGAAGGCGTTCAAGGCCTATG 535
Query 601 ACAAGATACGCCTTG-AGCGCACTAACAAGAGG-CATGCCGGAGCTAGAGCCAAGAGAGC 658
| ||||| || ||| ||||||| ||| | | ||||| || || ||||||||||| ||
Sbjct 536 ATAAGATTCGT-TTGGAGCGCACAAACGC-ACGTCATGCTGGTGCCAGAGCCAAGAGGGC 593
Query 659 CGCAGAGGCTGAGAAAGAAGAGAAGAAGT 687
||| |||||||||||||||||||||||||
Sbjct 594 CGCTGAGGCTGAGAAAGAAGAGAAGAAGT 622
> Ahg942682 jgi|Araly1|942682|scaffold_603226.1
Length=274
Score = 355 bits (192), Expect = 3e-97
Identities = 228/246 (93%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 464 CAAGGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGAGACTA 523
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 29 CAAAGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGAGACTA 88
Query 524 CTTGCCTATTGTACGTGAGAAGCCTACCATGGAACTCGTCAAGCTGACTTCAGAAATGAA 583
|||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||
Sbjct 89 CTTGCCTATTGTACGTGAGAAGCCAATCATGGAGCTCGTCAAGCTGACTTCAGAAATGAA 148
Query 584 GTCTTTCAAGGCTTTTGACAAGATACGCCTTGAGCGCACTAACAAGAGGCATGCCGGAGC 643
||| |||||||| | ||| |||||||| ||||||||||| |||||||| ||||| || ||
Sbjct 149 GTCCTTCAAGGCGTATGATAAGATACGTCTTGAGCGCACGAACAAGAGACATGCTGGTGC 208
Query 644 TAGAGCCAAGAGAGCCGCAGAGGCTGAGAAAGAAGAGAAGAAGTGAGGTCGTTCTTCTTA 703
|||||||||||||||| | ||||||||||||||||||||||||||||||| |||||| |
Sbjct 209 TAGAGCCAAGAGAGCCTCTGAGGCTGAGAAAGAAGAGAAGAAGTGAGGTCCTTCTTCAGA 268
Query 704 GGTAGA 709
||||||
Sbjct 269 GGTAGA 274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33014446122
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5