BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G49050.1 Length=2103 Score E Sequences producing significant alignments: (Bits) Value Ahg485259 jgi|Araly1|485259|fgenesh2_kg.5__1251__AT3G49050.1 3153 0.0 > Ahg485259 jgi|Araly1|485259|fgenesh2_kg.5__1251__AT3G49050.1 Length=2074 Score = 3153 bits (1707), Expect = 0.0 Identities = 1987/2114 (94%), Gaps = 51/2114 (2%) Strand=Plus/Plus Query 1 CAAAGTAGCTCTGCAACTGCAAGTTTAACCCCAAAGTCACTGCCACAAATAAAGAAAGCA 60 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1 CAAAGTAGCTCTGCAACTGCAAATTTAACCCCAAAGTCACTGCCACAAATAAAGAAAGCA 60 Query 61 AAGCTAACACGAGTCCAGCGAGTTTTGAATCTTCCTTCTATGGCATGATTTCCATTTCCT 120 |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| | Sbjct 61 AAGCTAACACGAGTCCGGCGAGTTTTGAATCCTCCTTCTATGGCATGATTTCCATTTCTT 120 Query 121 CTTCCGTTTTCCACGGGAAGACACTTCCCTTCTCTTCTTTATCTTCTCTCAAATTCTTCA 180 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 121 CTTCCGTTTTCCACGGGAATACACTTCCCTTCTCTTCTTTATCTTCTCTCAAATTCTTCA 180 Query 181 GTTCCTTCTCGAAATCATTGATCTTGATTTGAGCTTTAGAGAAGAGAAGAACAAAATTCA 240 |||||||||||||||||||||||||||||||||||| |||||||||||| | |||| | Sbjct 181 GTTCCTTCTCGAAATCATTGATCTTGATTTGAGCTTAAGAGAAGAGAAG-AGAAAA---A 236 Query 241 TAAGAGAACATAGAATAAGTAGTGAGATCTAATCCTCTTCCCATGTTTTTGTCTATAAAG 300 | || | | | |||||||||||||||| |||||||||||||||| |||||| || Sbjct 237 T--TAG----T-GTTTCAGTAGTGAGATCTAATTCTCTTCCCATGTTTTTCTCTATAGAG 289 Query 301 TAGCAATTAGAACTTCAATCTTCAATTTCATTTCCATTAACATTGTTTCCCATTCACAAA 360 |||||||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||| Sbjct 290 TAGCAATTAGGACTTCAATCTTCAATTTCATTACCATT-ACATTGTTTCCGATTCACAAA 348 Query 361 GTTGACttttttttCTTTGGTTTTAGCTTCAGTTCAAGATTCTTCAGTTGGGTGTACTAA 420 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 349 GTTGACTTTTTTTTCTTTGGTTTTAGCTTCAGTCCAAGATTCTTCAGTTGGGTGTACTAA 408 Query 421 AGTTTTGAAATTTCTTTGTTTAAACATTAAAAGTTTATGTTTTGATCGTTAGGTGTGCTG 480 ||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||| || Sbjct 409 AGTCTTGAAATTTCTTTGTTTAAACATTAAAAGTTTATGTTTTGATCGTTA-G-GTG-TG 465 Query 481 CTTCATTGGTCTATGATGATGAATGTGTTGTTATAACTCTGTATCTGTTCATGTCGATTC 540 ||||||||||||||||||||||| || |||||||| ||||||||| ||||||||||||| Sbjct 466 CTTCATTGGTCTATGATGATGAA--TG-TGTTATAATTCTGTATCTATTCATGTCGATTC 522 Query 541 TATGTGGTTGTTGCCCTCTTTTAGAATGTGTTTACTGTCTTGGTTGTGCACGTTGGGGTT 600 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 523 TATGTGGTTGTTGCCCTCTTTTAGAATGTGTTTACTGTCTTGGTTGTGCTCGTTGGGGTT 582 Query 601 ATAAACGTTGTCTTTATACTGCTGGTCACGACAGTGAAGATTGGGGACTTGCAACAACTG 660 |||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||| Sbjct 583 ATAAACGTTGCCTTTACACGGCTGGTCACGACAGTGAAGATTGGGGGCTTGCAACAACTG 642 Query 661 ATGAATTCGAACCGGTTCCTCGGTTTTGTCGTTATATTTTAGCTGTTTACGAGGATGATA 720 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 643 ATGAATTCGAACCAGTTCCTCGGTTTTGTCGTTATATTTTAGCTGTTTACGAGGATGATA 702 Query 721 TTCGAAATCCTTTGTGGGAGCCTCCAGAAGGATATGGGATTAACCCTGATTGGTTGCTTC 780 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 703 TTCGAAATCCTTTATGGGAGCCTCCAGAAGGATATGGGATTAACCCTGATTGGTTGCTTC 762 Query 781 TAAAGAAGACTTATGAAGACACTCAGGGTCGTGCTCCAGCTTATATATTGTATCTTGATC 840 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 763 TAAAGAAGACTTATGAAGATACTCAGGGTCGTGCTCCAGCTTATATATTGTATCTTGATC 822 Query 841 ATGTTCATCAAGATATAGTTGTTGCAATCCGGGGGTTGAATTTGGCTAAGGAGAGTGATT 900 ||||||||||||||||||||||||| ||||| ||| |||||||||| || |||||||||| Sbjct 823 ATGTTCATCAAGATATAGTTGTTGCGATCCGTGGGCTGAATTTGGCGAAAGAGAGTGATT 882 Query 901 ATGCAATGCTTTTGGATAATAAGCTTGGTGAAAGGAAGTTTGATGGTGGTTATGTGCACA 960 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 883 ATGCAATGCTTTTGGATAATAAGCTTGGTGAAAGGAAATTTGATGGTGGTTATGTGCACA 942 Query 961 ACGGGCTTGTGAAGTCTGCTGGTTATGTGTTAGATGAGGAATGTAAAGTTTTGAAAGAGT 1020 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 943 ACGGGCTGGTGAAGTCTGCGGGTTATGTGTTAGATGAGGAATGTAAAGTTTTGAAAGAAT 1002 Query 1021 TGGTGAAAAAGTATCCGAGTTATACTCTGACTTTTGCTGGACATTCACTTGGGTCTGGTG 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1003 TGGTGAAAAAGTATCCGAGTTATACTCTGACTTTTGCTGGACATTCACTTGGGTCTGGTG 1062 Query 1081 TAGCTACAATGTTGGCTTTGTTAGTGGTTCGACATCCGGAAAGATTGGGGAATATTGATA 1140 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 1063 TAGCTACAATGTTGGCTTTGTTAGTGGTTCGGCATCCGGAAAGATTGGGGAACATTGATA 1122 Query 1141 GAAAGAGAGTTAGGTGTTTCGCTATTGCGCCTGCGAGGTGTATGTCGTTGAATTTGGCTG 1200 |||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||| Sbjct 1123 GAAAGAGAGTTAGGTGTTTCGCTATTGCGCCTGCTAGGTGTATATCATTGAATTTGGCTG 1182 Query 1201 TTAGATATGCAGATGTGATTAACTCTGTCATACTTCAGGATGATTTCTTGCCTAGGACAG 1260 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 1183 TTAGATATGCAGATGTGATCAACTCTGTCATACTTCAGGATGATTTCTTGCCCAGGACAG 1242 Query 1261 CTACACCTCTAGAAGACATATTCAAGTCTGTATTCTGTTTGCCATGTTTGCTATGCATAA 1320 |||| ||| |||||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 1243 CTACGCCTTTAGAAGACATATTCAAGTCTGTGTTCTGTTTGCCATGTCTGCTATGCATAA 1302 Query 1321 GGTGCATGAAGGATACATGTGTTCCAGAGCAAAAGATGCTCAAAGATCCTAGACGGCTTT 1380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1303 GGTGCATGAAGGATACATGTGTTCCAGAGCAAAAGATGCTCAAAGATCCTAGACGGCTTT 1362 Query 1381 ATGCTCCTGGTCGCATGTATCACATCGTCGAAAGAAAGCCTTGCAGATTAGGAAGATATC 1440 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1363 ATGCACCTGGTCGCATGTATCACATCGTCGAAAGAAAGCCTTGCAGATTAGGAAGATATC 1422 Query 1441 CTCCGGTTGTGAAGACAGCAGTGCCGGTAGATGGAAGATTCGAACACATTGTTCTTTCTT 1500 ||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||||| Sbjct 1423 CTCCGGTGGTGAAGACAGCAGTGCCAGTAGACGGAAGGTTCGAACACATTGTTCTTTCTT 1482 Query 1501 GTAACGCAACTTCAGACCACGCCATCATCTGGATCGAACGAGAAGCTCAGAGAGCTCTCA 1560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1483 GTAACGCAACTTCAGACCACGCCATCATCTGGATCGAACGAGAAGCTCAGAGAGCTCTCA 1542 Query 1561 ACCTAATGATGGAGAATGAGAAGAAAATGGAGATCCCGGAGAAGCAAAGGATGGAGAGGC 1620 | |||||||||||||| || |||||||||||||| || |||||||||||||||||||||| Sbjct 1543 AACTAATGATGGAGAAGGAAAAGAAAATGGAGATTCCAGAGAAGCAAAGGATGGAGAGGC 1602 Query 1621 AAGAATCATTAGCCAGAGAGCACAACTTGGAGTACAGAGCAGCGTTAAGACGAGCAGTAA 1680 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1603 AAGAATCATTAGCCAGAGAGCACAACTTGGAGTATAGAGCAGCGTTAAGACGAGCAGTAA 1662 Query 1681 CGTTAGATGTACCTCACGCAGAGTCAATGGCCTATGAGTACGGAACATTCGACAAAACTC 1740 |||||||||| |||||||| ||||||||||||| |||||||||||||||| ||||||||| Sbjct 1663 CGTTAGATGTTCCTCACGCGGAGTCAATGGCCTCTGAGTACGGAACATTCAACAAAACTC 1722 Query 1741 aagaagacgaaaccgaagaagaagaagta---ga--aaca-gaggaagaagaa---gaag 1791 ||||||||||||||||||||||||||| | || || | || ||||||||| |||| Sbjct 1723 AAGAAGACGAAACCGAAGAAGAAGAAGAAACAGAGGAAGAAGAAGAAGAAGAAAAAGAAG 1782 Query 1792 aCACAGACTCGATTGCACCAATGGTGGGTGAATCATCATCATCATCTTCTGTTAAACCAA 1851 | ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1783 AAACAGACTTGATTGCACCAATGGTGGGTGAATCATCATCATCATCTTCTGTTCGACCAA 1842 Query 1852 CTTACAGGAT-AAGACGAAACCGTAGAGTTAGTTGGGACGAACTAATCGAACATCTCTTT 1910 ||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1843 CTTACAGGAAGAA-ACGGAACCGTAGAGTTAGTTGGGACGAACTAATCGAACATCTCTTT 1901 Query 1911 GAACGAGACGAGTCTGGTAACTTGACATTCGAGAAATCAGATTTACCTCAATGATCAAGA 1970 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1902 GAACGAGACGAGTCTGGTAACTTGACATTCGAGAAATCAGATTTGCCTCAATGATCAAGA 1961 Query 1971 TTCATGTTCTCTACTCAATCCATATATGTGAATGATATTGTATTGTGTaaaaaaaaCAGT 2030 |||| ||||| || | |||||||||||||||||||||||||| |||| Sbjct 1962 TTCAAGTTCT-TA-T------------GTGAATGATATTGTATTGTGTAAAAA---CAGT 2004 Query 2031 TGTTCATTACAATCATCATACA-ACAGACCACATTGGTCTGAGTTTTATTACAGAGGAAT 2089 | |||||||||||||||| | ||||||||||||||||||||||||||||||||||| | Sbjct 2005 T---CATTACAATCATCATA-ATACAGACCACATTGGTCTGAGTTTTATTACAGAGGATT 2060 Query 2090 TCTCATAAACTTCC 2103 |||||||||||||| Sbjct 2061 TCTCATAAACTTCC 2074 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79113438865 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5