BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49050.1
Length=2103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485259 jgi|Araly1|485259|fgenesh2_kg.5__1251__AT3G49050.1 3153 0.0
> Ahg485259 jgi|Araly1|485259|fgenesh2_kg.5__1251__AT3G49050.1
Length=2074
Score = 3153 bits (1707), Expect = 0.0
Identities = 1987/2114 (94%), Gaps = 51/2114 (2%)
Strand=Plus/Plus
Query 1 CAAAGTAGCTCTGCAACTGCAAGTTTAACCCCAAAGTCACTGCCACAAATAAAGAAAGCA 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 CAAAGTAGCTCTGCAACTGCAAATTTAACCCCAAAGTCACTGCCACAAATAAAGAAAGCA 60
Query 61 AAGCTAACACGAGTCCAGCGAGTTTTGAATCTTCCTTCTATGGCATGATTTCCATTTCCT 120
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 61 AAGCTAACACGAGTCCGGCGAGTTTTGAATCCTCCTTCTATGGCATGATTTCCATTTCTT 120
Query 121 CTTCCGTTTTCCACGGGAAGACACTTCCCTTCTCTTCTTTATCTTCTCTCAAATTCTTCA 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTCCGTTTTCCACGGGAATACACTTCCCTTCTCTTCTTTATCTTCTCTCAAATTCTTCA 180
Query 181 GTTCCTTCTCGAAATCATTGATCTTGATTTGAGCTTTAGAGAAGAGAAGAACAAAATTCA 240
|||||||||||||||||||||||||||||||||||| |||||||||||| | |||| |
Sbjct 181 GTTCCTTCTCGAAATCATTGATCTTGATTTGAGCTTAAGAGAAGAGAAG-AGAAAA---A 236
Query 241 TAAGAGAACATAGAATAAGTAGTGAGATCTAATCCTCTTCCCATGTTTTTGTCTATAAAG 300
| || | | | |||||||||||||||| |||||||||||||||| |||||| ||
Sbjct 237 T--TAG----T-GTTTCAGTAGTGAGATCTAATTCTCTTCCCATGTTTTTCTCTATAGAG 289
Query 301 TAGCAATTAGAACTTCAATCTTCAATTTCATTTCCATTAACATTGTTTCCCATTCACAAA 360
|||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 290 TAGCAATTAGGACTTCAATCTTCAATTTCATTACCATT-ACATTGTTTCCGATTCACAAA 348
Query 361 GTTGACttttttttCTTTGGTTTTAGCTTCAGTTCAAGATTCTTCAGTTGGGTGTACTAA 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 349 GTTGACTTTTTTTTCTTTGGTTTTAGCTTCAGTCCAAGATTCTTCAGTTGGGTGTACTAA 408
Query 421 AGTTTTGAAATTTCTTTGTTTAAACATTAAAAGTTTATGTTTTGATCGTTAGGTGTGCTG 480
||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 409 AGTCTTGAAATTTCTTTGTTTAAACATTAAAAGTTTATGTTTTGATCGTTA-G-GTG-TG 465
Query 481 CTTCATTGGTCTATGATGATGAATGTGTTGTTATAACTCTGTATCTGTTCATGTCGATTC 540
||||||||||||||||||||||| || |||||||| ||||||||| |||||||||||||
Sbjct 466 CTTCATTGGTCTATGATGATGAA--TG-TGTTATAATTCTGTATCTATTCATGTCGATTC 522
Query 541 TATGTGGTTGTTGCCCTCTTTTAGAATGTGTTTACTGTCTTGGTTGTGCACGTTGGGGTT 600
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 523 TATGTGGTTGTTGCCCTCTTTTAGAATGTGTTTACTGTCTTGGTTGTGCTCGTTGGGGTT 582
Query 601 ATAAACGTTGTCTTTATACTGCTGGTCACGACAGTGAAGATTGGGGACTTGCAACAACTG 660
|||||||||| ||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 583 ATAAACGTTGCCTTTACACGGCTGGTCACGACAGTGAAGATTGGGGGCTTGCAACAACTG 642
Query 661 ATGAATTCGAACCGGTTCCTCGGTTTTGTCGTTATATTTTAGCTGTTTACGAGGATGATA 720
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 ATGAATTCGAACCAGTTCCTCGGTTTTGTCGTTATATTTTAGCTGTTTACGAGGATGATA 702
Query 721 TTCGAAATCCTTTGTGGGAGCCTCCAGAAGGATATGGGATTAACCCTGATTGGTTGCTTC 780
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 TTCGAAATCCTTTATGGGAGCCTCCAGAAGGATATGGGATTAACCCTGATTGGTTGCTTC 762
Query 781 TAAAGAAGACTTATGAAGACACTCAGGGTCGTGCTCCAGCTTATATATTGTATCTTGATC 840
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 763 TAAAGAAGACTTATGAAGATACTCAGGGTCGTGCTCCAGCTTATATATTGTATCTTGATC 822
Query 841 ATGTTCATCAAGATATAGTTGTTGCAATCCGGGGGTTGAATTTGGCTAAGGAGAGTGATT 900
||||||||||||||||||||||||| ||||| ||| |||||||||| || ||||||||||
Sbjct 823 ATGTTCATCAAGATATAGTTGTTGCGATCCGTGGGCTGAATTTGGCGAAAGAGAGTGATT 882
Query 901 ATGCAATGCTTTTGGATAATAAGCTTGGTGAAAGGAAGTTTGATGGTGGTTATGTGCACA 960
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 883 ATGCAATGCTTTTGGATAATAAGCTTGGTGAAAGGAAATTTGATGGTGGTTATGTGCACA 942
Query 961 ACGGGCTTGTGAAGTCTGCTGGTTATGTGTTAGATGAGGAATGTAAAGTTTTGAAAGAGT 1020
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 943 ACGGGCTGGTGAAGTCTGCGGGTTATGTGTTAGATGAGGAATGTAAAGTTTTGAAAGAAT 1002
Query 1021 TGGTGAAAAAGTATCCGAGTTATACTCTGACTTTTGCTGGACATTCACTTGGGTCTGGTG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 TGGTGAAAAAGTATCCGAGTTATACTCTGACTTTTGCTGGACATTCACTTGGGTCTGGTG 1062
Query 1081 TAGCTACAATGTTGGCTTTGTTAGTGGTTCGACATCCGGAAAGATTGGGGAATATTGATA 1140
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1063 TAGCTACAATGTTGGCTTTGTTAGTGGTTCGGCATCCGGAAAGATTGGGGAACATTGATA 1122
Query 1141 GAAAGAGAGTTAGGTGTTTCGCTATTGCGCCTGCGAGGTGTATGTCGTTGAATTTGGCTG 1200
|||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 1123 GAAAGAGAGTTAGGTGTTTCGCTATTGCGCCTGCTAGGTGTATATCATTGAATTTGGCTG 1182
Query 1201 TTAGATATGCAGATGTGATTAACTCTGTCATACTTCAGGATGATTTCTTGCCTAGGACAG 1260
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1183 TTAGATATGCAGATGTGATCAACTCTGTCATACTTCAGGATGATTTCTTGCCCAGGACAG 1242
Query 1261 CTACACCTCTAGAAGACATATTCAAGTCTGTATTCTGTTTGCCATGTTTGCTATGCATAA 1320
|||| ||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1243 CTACGCCTTTAGAAGACATATTCAAGTCTGTGTTCTGTTTGCCATGTCTGCTATGCATAA 1302
Query 1321 GGTGCATGAAGGATACATGTGTTCCAGAGCAAAAGATGCTCAAAGATCCTAGACGGCTTT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 GGTGCATGAAGGATACATGTGTTCCAGAGCAAAAGATGCTCAAAGATCCTAGACGGCTTT 1362
Query 1381 ATGCTCCTGGTCGCATGTATCACATCGTCGAAAGAAAGCCTTGCAGATTAGGAAGATATC 1440
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 ATGCACCTGGTCGCATGTATCACATCGTCGAAAGAAAGCCTTGCAGATTAGGAAGATATC 1422
Query 1441 CTCCGGTTGTGAAGACAGCAGTGCCGGTAGATGGAAGATTCGAACACATTGTTCTTTCTT 1500
||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 1423 CTCCGGTGGTGAAGACAGCAGTGCCAGTAGACGGAAGGTTCGAACACATTGTTCTTTCTT 1482
Query 1501 GTAACGCAACTTCAGACCACGCCATCATCTGGATCGAACGAGAAGCTCAGAGAGCTCTCA 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 GTAACGCAACTTCAGACCACGCCATCATCTGGATCGAACGAGAAGCTCAGAGAGCTCTCA 1542
Query 1561 ACCTAATGATGGAGAATGAGAAGAAAATGGAGATCCCGGAGAAGCAAAGGATGGAGAGGC 1620
| |||||||||||||| || |||||||||||||| || ||||||||||||||||||||||
Sbjct 1543 AACTAATGATGGAGAAGGAAAAGAAAATGGAGATTCCAGAGAAGCAAAGGATGGAGAGGC 1602
Query 1621 AAGAATCATTAGCCAGAGAGCACAACTTGGAGTACAGAGCAGCGTTAAGACGAGCAGTAA 1680
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1603 AAGAATCATTAGCCAGAGAGCACAACTTGGAGTATAGAGCAGCGTTAAGACGAGCAGTAA 1662
Query 1681 CGTTAGATGTACCTCACGCAGAGTCAATGGCCTATGAGTACGGAACATTCGACAAAACTC 1740
|||||||||| |||||||| ||||||||||||| |||||||||||||||| |||||||||
Sbjct 1663 CGTTAGATGTTCCTCACGCGGAGTCAATGGCCTCTGAGTACGGAACATTCAACAAAACTC 1722
Query 1741 aagaagacgaaaccgaagaagaagaagta---ga--aaca-gaggaagaagaa---gaag 1791
||||||||||||||||||||||||||| | || || | || ||||||||| ||||
Sbjct 1723 AAGAAGACGAAACCGAAGAAGAAGAAGAAACAGAGGAAGAAGAAGAAGAAGAAAAAGAAG 1782
Query 1792 aCACAGACTCGATTGCACCAATGGTGGGTGAATCATCATCATCATCTTCTGTTAAACCAA 1851
| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1783 AAACAGACTTGATTGCACCAATGGTGGGTGAATCATCATCATCATCTTCTGTTCGACCAA 1842
Query 1852 CTTACAGGAT-AAGACGAAACCGTAGAGTTAGTTGGGACGAACTAATCGAACATCTCTTT 1910
||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1843 CTTACAGGAAGAA-ACGGAACCGTAGAGTTAGTTGGGACGAACTAATCGAACATCTCTTT 1901
Query 1911 GAACGAGACGAGTCTGGTAACTTGACATTCGAGAAATCAGATTTACCTCAATGATCAAGA 1970
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1902 GAACGAGACGAGTCTGGTAACTTGACATTCGAGAAATCAGATTTGCCTCAATGATCAAGA 1961
Query 1971 TTCATGTTCTCTACTCAATCCATATATGTGAATGATATTGTATTGTGTaaaaaaaaCAGT 2030
|||| ||||| || | |||||||||||||||||||||||||| ||||
Sbjct 1962 TTCAAGTTCT-TA-T------------GTGAATGATATTGTATTGTGTAAAAA---CAGT 2004
Query 2031 TGTTCATTACAATCATCATACA-ACAGACCACATTGGTCTGAGTTTTATTACAGAGGAAT 2089
| |||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct 2005 T---CATTACAATCATCATA-ATACAGACCACATTGGTCTGAGTTTTATTACAGAGGATT 2060
Query 2090 TCTCATAAACTTCC 2103
||||||||||||||
Sbjct 2061 TCTCATAAACTTCC 2074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79113438865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5