BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49055.1
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347996 jgi|Araly1|347996|fgenesh1_pg.C_scaffold_5001388 1831 0.0
> Ahg347996 jgi|Araly1|347996|fgenesh1_pg.C_scaffold_5001388
Length=1446
Score = 1831 bits (991), Expect = 0.0
Identities = 1312/1463 (90%), Gaps = 37/1463 (3%)
Strand=Plus/Plus
Query 1 ATGGATGTT-AAAGATACCGGAATCAACCGCTCGGATACTCCTATCTCCGATCAAGACCA 59
|||||| || | ||||||||||||| ||||||||||| || || |||||||||||||||
Sbjct 1 ATGGAT-TTCACAGATACCGGAATCTACCGCTCGGATTCTGCTGCCTCCGATCAAGACCA 59
Query 60 TGACTTTCGACAATG---GAATCACTCTTCGTTAGACTCTAACTTTCTCAGTCTCCGAAG 116
|||| | |||||||| ||||||| ||||||||||||| |||||||| ||||||||||
Sbjct 60 TGACCTCCGACAATGTAATAATCACTATTCGTTAGACTCTGACTTTCTCCGTCTCCGAAG 119
Query 117 CCAGATATTCGAAGCGAGTTATCGGAGAACTGATTTGATAAGAGTGAACCATGAG-TTGT 175
||||||||||||| |||||||||||||||||||||||| |||||||||| |||| || |
Sbjct 120 TCAGATATTCGAAGGGAGTTATCGGAGAACTGATTTGATTAGAGTGAACCTTGAGCTT-T 178
Query 176 TCCACGAGAGAGATGCACTTAGGCGAAGAAATAGTGAGCTTGAAGCTGGAATTTTGGAAG 235
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 179 CCCACGAGAGAGATGCACTTAGGCGAAGAAATCGTGAGCTTGAAGCTGGAATTTTGGAGG 238
Query 236 -AGGTTATGATTAGAGAGGAAATGAAGAGAGATCTGGAAGTTTCTAAAGAAACTGTCA-G 293
| | ||||||||| ||||||||||||||||| |||||||||||||||||| || | |
Sbjct 239 CA-GAGATGATTAGAAAGGAAATGAAGAGAGATATGGAAGTTTCTAAAGAAAGAGT-AGG 296
Query 294 TGAATTGGAAGGAGAGGCGAAGGAGAAAACCAAATTACTATCGGATATTGCGGATTATGT 353
||||| ||| |||||| ||||||||||| |||||||||||||||||||| |||||| ||
Sbjct 297 TGAATCGGATGGAGAGACGAAGGAGAAATCCAAATTACTATCGGATATTTCGGATTCCGT 356
Query 354 ACGATCTATGGAAGATCGCTTGTCGAAATTAATCCGATGTTTAAACGAAGAGAATGTTCC 413
||||||||||||||| ||||||||||||| ||||| |||||||||| | || | |
Sbjct 357 ACGATCTATGGAAGACCGCTTGTCGAAATCGATCCGCTGTTTAAACG-A-AG-A-G---- 408
Query 414 AGAAGAGGAAAGAGGGAGAAAACTGGAAACAAAGGAATATAATTCCAAATCTATTTTGGA 473
||||||||||||||| | |||||||||| | |||||||||||| || || || |||||
Sbjct 409 -GAAGAGGAAAGAGGGGGGAAACTGGAAAGAGAGGAATATAATTTCATGTCAATATTGGA 467
Query 474 GTTAGTCAAGGAGGTTGTAACGAAGTTAGAGACGTTCCA-GGAATCTACGAAGAAGAAGA 532
||||||||||||||||| |||||||||| ||||||| || |||||| | | |||||||||
Sbjct 468 GTTAGTCAAGGAGGTTGAAACGAAGTTAAAGACGTT-CATGGAATCAATGGAGAAGAAGA 526
Query 533 AGATGGAGCTAAGTAGAAGTGTGGAGTTCTTGGAAGAGGAGAATAGAGATATCAATGTCT 592
|| | | ||||||||||||||||||| |||||||||||||||| |||||||||| | |||
Sbjct 527 AGCTAGCGCTAAGTAGAAGTGTGGAGCTCTTGGAAGAGGAGAACAGAGATATCAGTATCT 586
Query 593 TGTTAAGAGCTGCTTTGTTTGAGAAACAAACTGCAGAGAAGCAATTGAAAGAGATGAATG 652
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TGTTAAGGGCTGCTTTGTCTGAGAAACAAACTGCAGAGAAGCAATTGAAAGAGATGAATG 646
Query 653 ATCAGAAGGGATTGGCTTTGCTGCAAATCGCAGGAAGAGGGTTGCAGAGAATAGGTTTTG 712
| |||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 647 AGCAGAAGGGATCGGCTTTGCTGCAAATCGCAGGACGAGGATTGCAGAGAATAGGTTTTG 706
Query 713 GTTTTGGGTTAGGAGAATCAGTAGAGGAGAGCTCAG-AGACGGGAAATATCG-C---G-- 765
|||| ||||| || || || |||||||||||||||| || |||||||| ||| | |
Sbjct 707 GTTTCGGGTTCGGGGATTCTGTAGAGGAGAGCTCAGAAG-CGGGAAATCTCGCCAAGGAC 765
Query 766 AATG--A-AGAAGAAGAGAATGGTGTGGTTATAGCAATAGAGAAAACAATGAAGAAACTG 822
|| | | |||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 766 AAGGAAAGAGAAGAAGAGAATGGTGTGGTTATAGCAATAGAGAACACTATGAAGAAGCTA 825
Query 823 CGGCAAGAGGTTTCTCAGCTGAAAATATCTTTGGAGGAATCAAGGTTAGAAGAAGTGGGG 882
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 826 CGGCAAGAGGTTTCTCAGCTGAAGATATCTTTGGAGGAATCAAGGTTAGAAGAAGAGCGA 885
Query 883 TTGAGGAAAGTTACAGAGGAACAAGCTCAGAAATTAGCAGAGAACACGGTGTATATCAAC 942
|||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 886 TTGAAGAAATTTACAGAGGAACAAGCTCAGAAAATAGCAGAGAACACGGTGTATATCGAC 945
Query 943 AAGCTGCAAAATCAAGAGAAGTTTCTTGCTCAAAACGTCGAAGAGCTAGTGAAAGCAATA 1002
|| |||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||
Sbjct 946 AATCTGCAAAATCAAGAGATGTTTCTTGCTCAAAACGTGGAAGAGCTAGTGAAAGTAATA 1005
Query 1003 AGAGAAGCAGAATCAGAAGTAAGTAGATGGAGAGAAGCTTGTGAGCTAGAAGTTGAAGCA 1062
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 AGAGAAGCTGAATCAGAAGTAAGTAGATGGAGAGAAGCTTGTGAGCTAGAAGTTGAAGCA 1065
Query 1063 GGGCAGCGCGAAGTCGAAGTACGGGATCAGCTCATAGCGGTTCTAAAGTCAGAGGTTGAG 1122
|||||||||||||| |||||||| ||||| |||||||||||| ||||| ||||||| |||
Sbjct 1066 GGGCAGCGCGAAGTGGAAGTACGCGATCAACTCATAGCGGTTTTAAAGACAGAGGTAGAG 1125
Query 1123 AAGCTGAGATCAGCATT-AGCCAGATCAGAAGGGAAA-CTAAAACTGAAAGAAGAATTGG 1180
|||||||||||||| || | ||| |||||| |||||| |||||| |||||||||||||||
Sbjct 1126 AAGCTGAGATCAGCCTTGA-CCATATCAGA-GGGAAAACTAAAATTGAAAGAAGAATTGG 1183
Query 1181 CCAAAGCTGCAATGGTAGCAGAAGAAGCAGCTGAGAAATCGCTGCGATTGGCCGAGAGAA 1240
| ||||| |||||||||||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct 1184 CTAAAGCCGCAATGGTAGCAGAAGAAGCAGCTGAGAAATCTCTGCGGTTGTCCGAGAGAA 1243
Query 1241 GAATAGCTCAACTTCTTAGCCGTATTGAACATCTCTACCGCCAATTGGAAGAAGCAGAGT 1300
|||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1244 GAATAGCTCAACTTCTCAGCCGCATTGAAAATCTCTACCGCCAATTGGAAGAAGCAGAGT 1303
Query 1301 CTACAGAACGCAGACGTGGAAAGTTCAGGTATGTTTGGTGTTGGCCGATGTGGCGTTTTC 1360
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || |
Sbjct 1304 CTACAGAACGCAGACGCGGAAAGTTTAGGTATGTTTGGTGTTGGCCGATGTGGCGCTTGC 1363
Query 1361 CTACCGCTGCTTCTACTGCTGCGACCGCTACTGGAAGTTCTTCATATACAAGCAACAGAG 1420
|||| ||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1364 CTACTGCTGCTTCTGCTGCTGCGACCGCTAGTGGTGGTTCTTCATATACAAGCAACAGAG 1423
Query 1421 CATTGTTACGATATGATGCGTGA 1443
||||||||||||||||||||||
Sbjct 1424 AATTGTTACGATATGATGCGTGA 1446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53973877165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5