BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49070.1
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937675 jgi|Araly1|937675|scaffold_501866.1 1541 0.0
> Ahg937675 jgi|Araly1|937675|scaffold_501866.1
Length=1165
Score = 1541 bits (834), Expect = 0.0
Identities = 1004/1087 (92%), Gaps = 8/1087 (1%)
Strand=Plus/Plus
Query 166 ACAGCTTCAGGTAGTTCAAATCCCAAAGATGGTGCTGACGTGGATGTCCGAGAGGAATAT 225
|||||||| |||||||||| |||||||||||||| ||| |||||||| ||||| ||||||
Sbjct 66 ACAGCTTCGGGTAGTTCAAGTCCCAAAGATGGTGATGATGTGGATGTTCGAGAAGAATAT 125
Query 226 GCAAACGCCTTTCGTACGGAATCATACAATCACTTTTGGACACGTGTCGTACAGC-TAAG 284
||||||||||||||||| || ||||||||||| ||||||||||||||| |||| | ||||
Sbjct 126 GCAAACGCCTTTCGTACAGAGTCATACAATCAGTTTTGGACACGTGTCATACA-CTTAAG 184
Query 285 CCGCAAAAAGTCCGCAGTGtcttcttcttcttcttctCCACCAATCGAATCATCCTCCAC 344
||| ||||||||| | | || ||||||||||| | | ||||||| ||||||||||||||
Sbjct 185 CCGTAAAAAGTCCAC-G-GT-GTCTTCTTCTTC-T-T-CACCAATTGAATCATCCTCCAC 238
Query 345 GTCAGCTCGTCTCATGTCTTATCGCCTATTCGCGCACAATCTTCTAGACCCGGATCTGAA 404
|||||||||||| ||||| |||||||| ||||| || ||||| ||||||||||||| ||
Sbjct 239 GTCAGCTCGTCTAATGTCCTATCGCCTCTTCGCACATAATCTCCTAGACCCGGATCCAAA 298
Query 405 TACCATTACTCGGATACTAGATGTATCCCGGGTCGGGCGACACACCCGAACTCTTCTCTC 464
||||||||| |||||||| ||||||||||||||||| |||| |||||||||||||||| |
Sbjct 299 TACCATTACCCGGATACTGGATGTATCCCGGGTCGGACGACCCACCCGAACTCTTCTCAC 358
Query 465 TGATTACTTCTTGGAGACGGCAAACGCTTTCTTGCTTTGCACGCAATTACTAAAAAACAT 524
|||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||
Sbjct 359 TGATTACTTCTTGGAGACGGCAAATGCTTTCTTGCTTTGCACGTTATTACTTAAAAACAT 418
Query 525 TCATCATCTTCGTTCTAAATACGAGTCTTTGAAACCAAAATTTCATTCGGAAAATCATAA 584
||||| |||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 419 TCATCGTCTTCGTTCTAAATACGAGTCTTTGAAACCTAAATTTCAATCGGAGAATCATAA 478
Query 585 TTCATTGGCTTTAATAGACCAATTCACGGAGATATCAAAATGGTTCGACCCGTTTATCTC 644
|||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 479 TTCATTGGATTTAGTAGACCAATTCACGGAGATATCAAAATGGTTTGACCCGTTTATCTC 538
Query 645 GTCGGGTTCTAGGATCCAGCTAATCAGATCCGGCTGTTTATACTTGCTAAAACGGCTAGA 704
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 539 GTCGGGTTCTAGGATCCAGCTAATCAGATCCAGCTGTTTAGACTTGCTAAAACGGCTAGA 598
Query 705 GTCGAGACGAGACAAGACACGAGCCAAACTTAAGCTTATCAACGGACTAACTCATAGCTC 764
||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 599 GTCAAGTCGAGACAAGACACGAGCCAAACTCAAGCTTATCAACGGACTAACTCATAGCTC 658
Query 765 AGGGCTTCTCGTTTTGGCTCTAACCACTACATTGATTGTAACCATAGCCTCTCACGCTTT 824
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 659 AGGGCTTCTCGTTTTGGCTCTAACAACTACATTGATTGTAACCATAGCCTCTCACGCCTT 718
Query 825 TGCTTTGTTTCTAGCCGCTCCGACTCTTTTAGCCTCTCAATTTAAACCAGCCGGTTTAAG 884
|||||||||| |||||| ||||||||||||| || || ||| ||||||||||| |||||
Sbjct 719 TGCTTTGTTTATAGCCGGTCCGACTCTTTTAACCGGTCGATTCAAACCAGCCGGGTTAAG 778
Query 885 GAATAAGTTAACAAAAACAGCGGCTCGGCTCGACGTTGCTGCCAAAGGTACTTACATTTT 944
|||||||| || |||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 779 AAATAAGTTGACGAAAACAGCGGCTCGACTCGACGTGGCTGCGAAAGGTACTTACATTTT 838
Query 945 AAGCCGTGATTTGGACACGATAAGCAGACTAGTGACACGAATTAACGATGAAGTGAACCA 1004
|||||||||||| |||||||||||| ||||||| || || ||||||||||||||| ||||
Sbjct 839 AAGCCGTGATTTAGACACGATAAGCCGACTAGTAACTCGGATTAACGATGAAGTGGACCA 898
Query 1005 TGTTCGAGCCATGGCTGAGTTTTGGGTTGGTAGAGGGTCGGGTCGGGTTCGAGGCAGTGA 1064
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 899 TGTTCGAGCCATGGCTGAGTTTTGGGTTGGGAGAGGGTCGGGTCGAGTTCGAGGCAGTGA 958
Query 1065 AGAAGTTGCTCGAGAGTTGAAGAGATGTGAAGAAAGCTTTAGTGAAGAACTTGATGAGCT 1124
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 959 AGAAGTGGCTCGAGAGTTAAAGAGATGTGAAGAAAGCTTTAGGGAAGAACTTGATGAGCT 1018
Query 1125 TGAAGAACATATTTACTTGTGTTTCATGACTATTAATCGGGCAAGGAATCTTCTTGTTAA 1184
|||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1019 TGAAAAACATATCTACTTGTGTTTCATGACTATTAATCGGGCAAGGAATCTTGTTGTTAG 1078
Query 1185 AGAGATTTTGGATTCGGATGATCCACCTAATTGTTCATTCGCTCCCAAATCCaaaaaaaa 1244
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AGAGGTTTTGGATTCGGATGATCCACCTAATTGTTCATTCGCTCCCAAATCCAAAAAAAA 1138
Query 1245 aTTGTAG 1251
|||||||
Sbjct 1139 ATTGTAG 1145
Score = 86.1 bits (46), Expect = 6e-16
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 1 ATGGGTATAAAAGTTTCATCAAAGATCAAAAGAATTCTCGCATCCACAG 49
|||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 21 ATGGGTATAAAAGTTTCATCAAAGATCAAAAGAATTCTCGCATCGACAG 69
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46738696242
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5