BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G49080.1 Length=1709 Score E Sequences producing significant alignments: (Bits) Value Ahg937676 jgi|Araly1|937676|scaffold_501867.1 2159 0.0 Ahg489762 jgi|Araly1|489762|fgenesh2_kg.6__2896__AT4G08590.1 139 6e-32 > Ahg937676 jgi|Araly1|937676|scaffold_501867.1 Length=1340 Score = 2159 bits (1169), Expect = 0.0 Identities = 1287/1344 (96%), Gaps = 7/1344 (1%) Strand=Plus/Plus Query 47 TCTCAAGTGTTCGTCTTCACCATCATGCTCTCTCGTTTATTCCTTAGACATTCGAATCTC 106 |||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1 TCTC-AGTGTTCTTCTTCACCATCATGCTCTCTCGTTTATTCCTTAGACCTTCGAATCTC 59 Query 107 CGTTTCGTAACCCTAGTTTCATCGAAATCAAATTCTCAGATCTTCTCTTCGTTTATTCGT 166 |||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 60 CGTTACGTAACACTAGTTACATCGAAATCAAATTCTCAGATCTTCTCTTCGTTTATTCGT 119 Query 167 CCGCTTTCGACTAACAGTAGCGGCGGCGGAGGAAATGGTGACGGGAATGGTCGTAATCGG 226 |||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||| Sbjct 120 CCGCTTTCCACTAACAGTACCGGCGGCGGCGGAAATGGTGACGGGAATGGTCGTAATCGG 179 Query 227 AATGATGTTCCGTGGAGTTTCACTGGAGTAAACGATGATAAGTCTGGACCTTTCTCTTCC 286 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 180 AATGATGTTCCGTGGAGTTTTACTGGAGTAAACGATGATAAGTCTGGTCCTTTCTCTTCC 239 Query 287 GATGATTCTTTTGGTTCTTCTGGAGTTGCAGGATCT-GGTTTACCTGGTGGAGAGGGGAA 345 |||||||||| |||||||||||||||||||||||| ||| | ||||||||| ||||| Sbjct 240 GATGATTCTTGGGGTTCTTCTGGAGTTGCAGGATCTGGGTCT-GTTGGTGGAGATGGGAA 298 Query 346 ATGGCCGGAGGAGCCTAAGAGATGGAATAT-AAAGGAGGAAGAGGAAAAAGTTGTGTTTG 404 |||||||||||||||||||||||||||||| ||| ||||||||||| || |||||||||| Sbjct 299 ATGGCCGGAGGAGCCTAAGAGATGGAATATGAAA-GAGGAAGAGGATAAGGTTGTGTTTG 357 Query 405 ATACTGGTGGTGAAGTAGGTCAAGGGATTGAGACTAGTCGCgagaggaggggtaatgaat 464 |||||||||||||||| |||||||||||||||||| ||||||||||||| || ||||||| Sbjct 358 ATACTGGTGGTGAAGTCGGTCAAGGGATTGAGACTGGTCGCGAGAGGAGAGGCAATGAAT 417 Query 465 gggaggagactaagagatgggatatgaaggagggagaggagaAAGTTGTGTTTGGTGGC- 523 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || Sbjct 418 GGGAGGAGACTAAGCGATGGGATATGAAGAAGGGAGAGGAGAAAGTTGTGTTTGGT-GCT 476 Query 524 GGAGGAGATGAGGTGGATGGGTTTGGAATCAGGGGAGAGGTGAAATCTAATGAATGGGAT 583 |||| ||||| |||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 477 GGAGAAGATGTGGTGGATGGGTTTGGAATTAGAGGAGAGGTGAAATCTAATGAATGGGAT 536 Query 584 GTGTCAAAGCCATGGAATTTGAAAGAGGAAGAGGAGGGAGTTGTGTTTGATACTGGTGGT 643 ||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 537 GTGTCAAAGCCGTGGAATTTGAAAGAAGAGGAGGAGGGAGTTGTGTTTGATACTGGTGGT 596 Query 644 GAAGTGCCGTTTAGCTTTGAGAATAGCTTGGAAATGGCGGAGGAAGAGCGTGTGAAGAAG 703 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 GAAGTGCCGTTTAGCTTTGAGAATAGCTTGGAAATGGCGGAGGAAGAGCGTGTGAAGAAG 656 Query 704 GAGTTGATTGAGAAGGAAGAGAAGGAGCTTCTTGAGGTTATCAAGGGTCCTGATCGAGCA 763 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 657 GAGTTGATTGAGAAAGAGGAGAAGGAGCTTCTTGAGGTTATCAAGGGTCCTGATCGAGCA 716 Query 764 TTTGGAGACCTTATTGCTAAGTCAGGTATAACAGATGAAATGCTAGATAGTTTAATAGCC 823 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 717 TTTGGAGACCTTATTGCTAAGTCGGGTATAACAGATGAAATGCTAGATAGTTTAATAGCC 776 Query 824 TTGAAAGATTTCCAAGGGGTCGAAGGATTACCTCCTCTGACTGAGATTGAAAACCTGCGT 883 ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 777 TTGAAGGATTTCCAAGGGGTCGAAGGATTGCCTCCTCTGACTGAGATTGAAAACCTGCGC 836 Query 884 CGTGAGAAAAGTTCAAAGAAGTCATCAAGAGCTGAGATAGAACTCCAGATGCAAGAGGAC 943 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 837 CGTGAGAAAAGTTCAAAGAAGTCCTCAAGAGCTGAGATTGAACTCCAGATGCAAGAGGAC 896 Query 944 ATTGCCAAAGCACGGGTGAGACAAGTTGACGAAACAGGTAGAGCCTATGGAACTGGAAGA 1003 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 897 ATTGCCAAAGCACGGGTGAGACAGGTTGACGAAACAGGTAGAGCCTATGGAACTGGAAGA 956 Query 1004 AGAAAATGTAGCATTGCACGTGTTTGGATTCAACCTGGGGAAGGAAAATTTCAAGTTAAT 1063 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 957 AGAAAATGTAGCATTGCCCGTGTTTGGATTCAACCTGGGGAAGGAAAATTTCAAGTTAAT 1016 Query 1064 GAAAAAGAATTTGATGTCTATTTCCCTATGCTTGATCATCGCGCTGCTCTTCTACGCCCA 1123 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 GAAAAAGAATTTGATGCCTATTTCCCTATGCTTGATCATCGCGCTGCTCTTCTACGCCCA 1076 Query 1124 CTTGCTGAAACCAAAACCTTGGGTCGTTGGGATATTAAGTGCACTGTTAAAGGCGGTGGT 1183 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1077 CTTGCTGAAACCAAAACCTTGGGTCGGTGGGATATTAAGTGCACTGTTAAAGGCGGTGGT 1136 Query 1184 ACTACAGGTCAAGTCGGAGCTATTCAATTGGGTATCAGCAGGGCACTGCAAAACTGGGAA 1243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1137 ACTACAGGTCAAGTCGGAGCTATTCAATTGGGTATCAGCAGGGCACTGCAAAACTGGGAA 1196 Query 1244 CCAGATATGCGGACATCACTTCGAGCTGCTGGTTTCTTGACAAGAGACTCTCGAGTTGTG 1303 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1197 CCAGATATGCGGACATCACTTCGAGCTGCTGGTTTTTTGACAAGAGACTCTCGAGTTGTG 1256 Query 1304 GAAAGAAAGAAACCTGGAAAAGCCAAGGCAAGAAAGAGCTTCCAATGGGTCAAACGTTGA 1363 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 1257 GAAAGGAAGAAACCTGGAAAAGCCAAGGCTAGAAAGAGCTTCCAATGGGTCAAACGTTAA 1316 Query 1364 ATCCGAAAATGCGTACTATATCTT 1387 ||||||||| ||||| ||||||| Sbjct 1317 ATCCGAAAACCCGTACAATATCTT 1340 > Ahg489762 jgi|Araly1|489762|fgenesh2_kg.6__2896__AT4G08590.1 Length=1524 Score = 139 bits (75), Expect = 6e-32 Identities = 120/140 (86%), Gaps = 9/140 (6%) Strand=Plus/Plus Query 1384 TCTTCTCCTTTTTGTCTCTG-TCATTTTCATTAG-T--TCGTCTA-CTTATCCCGGGTTT 1438 |||||||||||||||| || ||||||| || | | || |||| ||||| |||||||| Sbjct 1349 TCTTCTCCTTTTTGTC-ATGATCATTTTTGTTGGTTCATCATCTATCTTATACCGGGTTT 1407 Query 1439 AGAAGAATCACCGGCAAATAACTTGTTCTTTTGGTTC-A--ATCCCGTAGTTATCTTTTT 1495 |||||||||||||||||||||||||||||||||||| | ||||| |||||||||| || Sbjct 1408 AGAAGAATCACCGGCAAATAACTTGTTCTTTTGGTTTGATGATCCCTTAGTTATCTTCTT 1467 Query 1496 GTACCAACACATTCTTCTCT 1515 ||||||| ||| |||||||| Sbjct 1468 GTACCAAAACAGTCTTCTCT 1487 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64105882335 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5