BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49080.1
Length=1709
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937676 jgi|Araly1|937676|scaffold_501867.1 2159 0.0
Ahg489762 jgi|Araly1|489762|fgenesh2_kg.6__2896__AT4G08590.1 139 6e-32
> Ahg937676 jgi|Araly1|937676|scaffold_501867.1
Length=1340
Score = 2159 bits (1169), Expect = 0.0
Identities = 1287/1344 (96%), Gaps = 7/1344 (1%)
Strand=Plus/Plus
Query 47 TCTCAAGTGTTCGTCTTCACCATCATGCTCTCTCGTTTATTCCTTAGACATTCGAATCTC 106
|||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 TCTC-AGTGTTCTTCTTCACCATCATGCTCTCTCGTTTATTCCTTAGACCTTCGAATCTC 59
Query 107 CGTTTCGTAACCCTAGTTTCATCGAAATCAAATTCTCAGATCTTCTCTTCGTTTATTCGT 166
|||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CGTTACGTAACACTAGTTACATCGAAATCAAATTCTCAGATCTTCTCTTCGTTTATTCGT 119
Query 167 CCGCTTTCGACTAACAGTAGCGGCGGCGGAGGAAATGGTGACGGGAATGGTCGTAATCGG 226
|||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 120 CCGCTTTCCACTAACAGTACCGGCGGCGGCGGAAATGGTGACGGGAATGGTCGTAATCGG 179
Query 227 AATGATGTTCCGTGGAGTTTCACTGGAGTAAACGATGATAAGTCTGGACCTTTCTCTTCC 286
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 180 AATGATGTTCCGTGGAGTTTTACTGGAGTAAACGATGATAAGTCTGGTCCTTTCTCTTCC 239
Query 287 GATGATTCTTTTGGTTCTTCTGGAGTTGCAGGATCT-GGTTTACCTGGTGGAGAGGGGAA 345
|||||||||| |||||||||||||||||||||||| ||| | ||||||||| |||||
Sbjct 240 GATGATTCTTGGGGTTCTTCTGGAGTTGCAGGATCTGGGTCT-GTTGGTGGAGATGGGAA 298
Query 346 ATGGCCGGAGGAGCCTAAGAGATGGAATAT-AAAGGAGGAAGAGGAAAAAGTTGTGTTTG 404
|||||||||||||||||||||||||||||| ||| ||||||||||| || ||||||||||
Sbjct 299 ATGGCCGGAGGAGCCTAAGAGATGGAATATGAAA-GAGGAAGAGGATAAGGTTGTGTTTG 357
Query 405 ATACTGGTGGTGAAGTAGGTCAAGGGATTGAGACTAGTCGCgagaggaggggtaatgaat 464
|||||||||||||||| |||||||||||||||||| ||||||||||||| || |||||||
Sbjct 358 ATACTGGTGGTGAAGTCGGTCAAGGGATTGAGACTGGTCGCGAGAGGAGAGGCAATGAAT 417
Query 465 gggaggagactaagagatgggatatgaaggagggagaggagaAAGTTGTGTTTGGTGGC- 523
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 418 GGGAGGAGACTAAGCGATGGGATATGAAGAAGGGAGAGGAGAAAGTTGTGTTTGGT-GCT 476
Query 524 GGAGGAGATGAGGTGGATGGGTTTGGAATCAGGGGAGAGGTGAAATCTAATGAATGGGAT 583
|||| ||||| |||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 477 GGAGAAGATGTGGTGGATGGGTTTGGAATTAGAGGAGAGGTGAAATCTAATGAATGGGAT 536
Query 584 GTGTCAAAGCCATGGAATTTGAAAGAGGAAGAGGAGGGAGTTGTGTTTGATACTGGTGGT 643
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 537 GTGTCAAAGCCGTGGAATTTGAAAGAAGAGGAGGAGGGAGTTGTGTTTGATACTGGTGGT 596
Query 644 GAAGTGCCGTTTAGCTTTGAGAATAGCTTGGAAATGGCGGAGGAAGAGCGTGTGAAGAAG 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GAAGTGCCGTTTAGCTTTGAGAATAGCTTGGAAATGGCGGAGGAAGAGCGTGTGAAGAAG 656
Query 704 GAGTTGATTGAGAAGGAAGAGAAGGAGCTTCTTGAGGTTATCAAGGGTCCTGATCGAGCA 763
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GAGTTGATTGAGAAAGAGGAGAAGGAGCTTCTTGAGGTTATCAAGGGTCCTGATCGAGCA 716
Query 764 TTTGGAGACCTTATTGCTAAGTCAGGTATAACAGATGAAATGCTAGATAGTTTAATAGCC 823
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 717 TTTGGAGACCTTATTGCTAAGTCGGGTATAACAGATGAAATGCTAGATAGTTTAATAGCC 776
Query 824 TTGAAAGATTTCCAAGGGGTCGAAGGATTACCTCCTCTGACTGAGATTGAAAACCTGCGT 883
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 777 TTGAAGGATTTCCAAGGGGTCGAAGGATTGCCTCCTCTGACTGAGATTGAAAACCTGCGC 836
Query 884 CGTGAGAAAAGTTCAAAGAAGTCATCAAGAGCTGAGATAGAACTCCAGATGCAAGAGGAC 943
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 837 CGTGAGAAAAGTTCAAAGAAGTCCTCAAGAGCTGAGATTGAACTCCAGATGCAAGAGGAC 896
Query 944 ATTGCCAAAGCACGGGTGAGACAAGTTGACGAAACAGGTAGAGCCTATGGAACTGGAAGA 1003
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 897 ATTGCCAAAGCACGGGTGAGACAGGTTGACGAAACAGGTAGAGCCTATGGAACTGGAAGA 956
Query 1004 AGAAAATGTAGCATTGCACGTGTTTGGATTCAACCTGGGGAAGGAAAATTTCAAGTTAAT 1063
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 AGAAAATGTAGCATTGCCCGTGTTTGGATTCAACCTGGGGAAGGAAAATTTCAAGTTAAT 1016
Query 1064 GAAAAAGAATTTGATGTCTATTTCCCTATGCTTGATCATCGCGCTGCTCTTCTACGCCCA 1123
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GAAAAAGAATTTGATGCCTATTTCCCTATGCTTGATCATCGCGCTGCTCTTCTACGCCCA 1076
Query 1124 CTTGCTGAAACCAAAACCTTGGGTCGTTGGGATATTAAGTGCACTGTTAAAGGCGGTGGT 1183
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1077 CTTGCTGAAACCAAAACCTTGGGTCGGTGGGATATTAAGTGCACTGTTAAAGGCGGTGGT 1136
Query 1184 ACTACAGGTCAAGTCGGAGCTATTCAATTGGGTATCAGCAGGGCACTGCAAAACTGGGAA 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 ACTACAGGTCAAGTCGGAGCTATTCAATTGGGTATCAGCAGGGCACTGCAAAACTGGGAA 1196
Query 1244 CCAGATATGCGGACATCACTTCGAGCTGCTGGTTTCTTGACAAGAGACTCTCGAGTTGTG 1303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1197 CCAGATATGCGGACATCACTTCGAGCTGCTGGTTTTTTGACAAGAGACTCTCGAGTTGTG 1256
Query 1304 GAAAGAAAGAAACCTGGAAAAGCCAAGGCAAGAAAGAGCTTCCAATGGGTCAAACGTTGA 1363
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1257 GAAAGGAAGAAACCTGGAAAAGCCAAGGCTAGAAAGAGCTTCCAATGGGTCAAACGTTAA 1316
Query 1364 ATCCGAAAATGCGTACTATATCTT 1387
||||||||| ||||| |||||||
Sbjct 1317 ATCCGAAAACCCGTACAATATCTT 1340
> Ahg489762 jgi|Araly1|489762|fgenesh2_kg.6__2896__AT4G08590.1
Length=1524
Score = 139 bits (75), Expect = 6e-32
Identities = 120/140 (86%), Gaps = 9/140 (6%)
Strand=Plus/Plus
Query 1384 TCTTCTCCTTTTTGTCTCTG-TCATTTTCATTAG-T--TCGTCTA-CTTATCCCGGGTTT 1438
|||||||||||||||| || ||||||| || | | || |||| ||||| ||||||||
Sbjct 1349 TCTTCTCCTTTTTGTC-ATGATCATTTTTGTTGGTTCATCATCTATCTTATACCGGGTTT 1407
Query 1439 AGAAGAATCACCGGCAAATAACTTGTTCTTTTGGTTC-A--ATCCCGTAGTTATCTTTTT 1495
|||||||||||||||||||||||||||||||||||| | ||||| |||||||||| ||
Sbjct 1408 AGAAGAATCACCGGCAAATAACTTGTTCTTTTGGTTTGATGATCCCTTAGTTATCTTCTT 1467
Query 1496 GTACCAACACATTCTTCTCT 1515
||||||| ||| ||||||||
Sbjct 1468 GTACCAAAACAGTCTTCTCT 1487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64105882335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5