BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G49100.1 Length=576 Score E Sequences producing significant alignments: (Bits) Value Ahg937677 jgi|Araly1|937677|scaffold_501868.1 547 3e-155 > Ahg937677 jgi|Araly1|937677|scaffold_501868.1 Length=352 Score = 547 bits (296), Expect = 3e-155 Identities = 325/339 (96%), Gaps = 1/339 (0%) Strand=Plus/Plus Query 97 TGAATCAAGATGGTTTATATCGCATCGTGGGACGAATTCGTTGATCGATCTGTTCAGCTT 156 ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| || Sbjct 12 TGAATCAAGATGGTTTACATCGCTTCATGGGACGAATTCGTTGATCGATCTGTTCAGATT 71 Query 157 TTTCGAGCTGATCCGGAATCTACTCGGTATGTGATGAAGTATAGACACTGTGACGGCAAG 216 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 72 TTTCGAGCTGATCCCGAATCTACTCGGTATGTGATGAAGTATAGACATTGTGACGGAAAG 131 Query 217 TTGGTTCTTAAGGTTACTGATAACAAAGAGTGTCTCAAGTTCAAGACAGACCAAGCACAA 276 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 132 TTAGTTCTCAAGGTTACTGATAACAAAGAGTGTCTCAAGTTCAAGACAGACCAAGCACAA 191 Query 277 GAAGCGAAGAAGATGGAGAAACTGAATAACATATTTTTCACCCTCATGGCCAGAGGACCT 336 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 192 GAAGCGAAGAAGATGGAGAAACTGAATAACATATTTTTTACCCTCATGGCCAGAGGACCT 251 Query 337 GATGTCGATCTCTCAGAAGTCACCGGGAAAGAACAGATGGAGACACAGCCTGCCAAGAAA 396 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 252 GATGTCGATCTCTCTGAAGTCACCGGGAAAGAACAGATGGAGACACAGCCTGCCAAGAAA 311 Query 397 GGAAGAGGAAGGAAGCAATAAGTCTCAAGATT-TGTTTT 434 ||||||||||||||||||||||||||| || | |||||| Sbjct 312 GGAAGAGGAAGGAAGCAATAAGTCTCATGAATATGTTTT 350 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21061885128 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5