BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G49100.1

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937677 jgi|Araly1|937677|scaffold_501868.1                        547    3e-155


> Ahg937677 jgi|Araly1|937677|scaffold_501868.1
Length=352

 Score =  547 bits (296),  Expect = 3e-155
 Identities = 325/339 (96%), Gaps = 1/339 (0%)
 Strand=Plus/Plus

Query  97   TGAATCAAGATGGTTTATATCGCATCGTGGGACGAATTCGTTGATCGATCTGTTCAGCTT  156
            ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| ||
Sbjct  12   TGAATCAAGATGGTTTACATCGCTTCATGGGACGAATTCGTTGATCGATCTGTTCAGATT  71

Query  157  TTTCGAGCTGATCCGGAATCTACTCGGTATGTGATGAAGTATAGACACTGTGACGGCAAG  216
            |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct  72   TTTCGAGCTGATCCCGAATCTACTCGGTATGTGATGAAGTATAGACATTGTGACGGAAAG  131

Query  217  TTGGTTCTTAAGGTTACTGATAACAAAGAGTGTCTCAAGTTCAAGACAGACCAAGCACAA  276
            || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  132  TTAGTTCTCAAGGTTACTGATAACAAAGAGTGTCTCAAGTTCAAGACAGACCAAGCACAA  191

Query  277  GAAGCGAAGAAGATGGAGAAACTGAATAACATATTTTTCACCCTCATGGCCAGAGGACCT  336
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  192  GAAGCGAAGAAGATGGAGAAACTGAATAACATATTTTTTACCCTCATGGCCAGAGGACCT  251

Query  337  GATGTCGATCTCTCAGAAGTCACCGGGAAAGAACAGATGGAGACACAGCCTGCCAAGAAA  396
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  252  GATGTCGATCTCTCTGAAGTCACCGGGAAAGAACAGATGGAGACACAGCCTGCCAAGAAA  311

Query  397  GGAAGAGGAAGGAAGCAATAAGTCTCAAGATT-TGTTTT  434
            ||||||||||||||||||||||||||| || | ||||||
Sbjct  312  GGAAGAGGAAGGAAGCAATAAGTCTCATGAATATGTTTT  350



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21061885128


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5