BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49110.1
Length=1365
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485262 jgi|Araly1|485262|fgenesh2_kg.5__1254__AT3G49110.1 1666 0.0
Ahg485264 jgi|Araly1|485264|fgenesh2_kg.5__1256__AT3G49120.1 1393 0.0
Ahg326972 jgi|Araly1|326972|fgenesh1_pm.C_scaffold_6002192 1229 0.0
Ahg323056 jgi|Araly1|323056|fgenesh1_pm.C_scaffold_5000600 913 0.0
Ahg321537 jgi|Araly1|321537|fgenesh1_pm.C_scaffold_4001594 231 8e-60
> Ahg485262 jgi|Araly1|485262|fgenesh2_kg.5__1254__AT3G49110.1
Length=1242
Score = 1666 bits (902), Expect = 0.0
Identities = 1164/1284 (91%), Gaps = 43/1284 (3%)
Strand=Plus/Plus
Query 1 ATCTTCTCCGTTAAACCCATTTAAATAGTTTTCATTGTCCTTGTGAAAAATGCAATTCTC 60
||||||||| ||||||||| ||||||| |||||||| |||||||||||||||| |
Sbjct 1 ATCTTCTCCATTAAACCCAATTAAATACTTTTCATTTTCCTTGTGAAAAATGC-A----G 55
Query 61 TTCATCTTCTATTACTTCTTTCACTTGGACAGTTTTAATCACAGTGGGATGTCTTATGCT 120
||| ||||| | |||||||||||| | ||||||||| ||||||||||||||||
Sbjct 56 TTC-TCTTC----A-----TTCACTTGGACAATCTTAATCACATTGGGATGTCTTATGCT 105
Query 121 TTGTGCGTCTTTCTCCGATGCTCAACTTACCCCTACTTTTTACGACACTTCATGTCCTAC 180
| |||||||| | ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 106 TCGTGCGTCTCTGTCCGATGCTCAACTTACCCCTACCTTCTACGACACTTCATGTCCTAA 165
Query 181 CGTCACCAACATTGTAAGAGATACCATTGTCAACGAGCTAAGATCGGACCCTCGTATCGC 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 166 CGTCACCAACATTGTAAGAGATACCATTGTGAACGAGCTAAGATCGGACCCTCGTATCGC 225
Query 241 CGGGAGCATCCTTCGTCTTCACTTCCATGACTGCTTTGTTAATGGTTGTGATGCTTCGAT 300
||||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||
Sbjct 226 CGGGAGCATCCTTCGTCTTCACTTCCACGACTGCTTTGTTAATGGTTGTGACGCATCCAT 285
Query 301 CTTGTTAGACAACACGACATCATTTCGA-ACAGAGAAAGATGCACTTGGAAATGCAAATT 359
|||||||||||||||||||||||||| | |||||||||||||| |||||||| |||||||
Sbjct 286 CTTGTTAGACAACACGACATCATTTC-AGACAGAGAAAGATGCGCTTGGAAACGCAAATT 344
Query 360 CAGCCCGAGGATTTCCAGTGATTGATAGAATGAAAGCTGCGGTGGAGAGGGCATGCCCAA 419
| || ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 345 CGGCTCGAGGATTTCCTGTGATTGATAGAATGAAAGCCGCGGTAGAGAGGGCATGCCCAA 404
Query 420 GAACCGTTTCATGCGCAGATATGCTCACCATTGCTGCTCAACAATCTGTCACTTTGGCAG 479
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 405 GAACCGTTTCGTGCGCAGATATGCTCACCATTGCAGCTCAACAATCTGTCACTTTGGCAG 464
Query 480 GAGGTCCTTCTTGGAAGGTTCCTTTAGGGAGAAGAGACAGCTTACAAGCATTTCTAGATC 539
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 465 GAGGTCCTTCTTGGAAGGTTCCTTTGGGGAGAAGAGACAGCTTACAAGCATTTCTAAATC 524
Query 540 TTGCTAACGCAAATCTTCCAGCTCCATTCTTCACACTTCCACAGCTTAAAGCCAACTTCA 599
| ||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 525 TCGCTAATGCAAATCTCCCAGCTCCATTCTTCACACTTCCAGAGCTTAAAGCCAACTTCA 584
Query 600 AAAATGTTGGCCTCGATCGTCCTTCTGATCTTGTTGCGCTCTCCGGGGCTCACACATTTG 659
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 585 AAAAAGTTGGCCTCGATCGTCCTTCTGATCTTGTTGCTCTCTCCGGGGCTCACACATTTG 644
Query 660 GTAAAAATCAATGTCGATTCATTATGGACAGATTATACAACTTTAGCAACACTGGATTAC 719
||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||
Sbjct 645 GTAAAAATCAATGTCGATTTATTATGGACCGATTATACAACTTTAGCAACACCGGATTAC 704
Query 720 CTGACCCTACACTCAACACTACTTACCTCCAAACTCTTCGTGGTCAATGTCCTCGCAATG 779
||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 705 CTGACCCTACACTCAACACGACTTACCTACAAACTCTTCGTGGACAATGTCCTCGCAATG 764
Query 780 GTAATCAAAGCGTCTTAGTGGATTTCGATCTGCGTACGCCTTTGGTTTTCGACAACAAAT 839
|||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 765 GTAATCAAAGTGTTTTAGTGGATTTCGATCTGCGTACGCCTTTAGTTTTCGACAACAAAT 824
Query 840 ACTATGTGAATCTTAAAGAGCAAAAAGGTCTTATCCAGAGCGACCAAGAGTTGTTCTCTA 899
||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 825 ACTATGTGAATCTCAAAGAGCAAAAAGGTCTTATCCAAAGCGATCAAGAGTTGTTCTCTA 884
Query 900 GCCCCAATGCCACTGACACAATCCCCTTGGTGAGAGCATATGCTGATGGCACACAAACAT 959
||||||||||||| ||||| ||||||||||||||| ||| ||||||||||||| ||| ||
Sbjct 885 GCCCCAATGCCACAGACACGATCCCCTTGGTGAGATCATTTGCTGATGGCACAGAAAAAT 944
Query 960 TCTTCAATGCATTCGTGGAGGCAATGAATAGGATGGGAAATATTACACCAACTACAGGAA 1019
|||| |||| || |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 945 TCTTTGATGCGTTTGTGGAGGCAATGAATAGGATGGGAAACATTACACCTACTACAGGAT 1004
Query 1020 CTCAAGGACAAATCAGGTTGAATTGTAGAGTGGTGAACTCCAACTCTCTACTCCATGATG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 CTCAAGGACAAATCAGGTTGAATTGTAGAGTGGTGAACTCCAACTCTCTACTCCATGATG 1064
Query 1080 TGGTGGATATCGTTGACTTTGTAAGTTCTATGTGAGAATAGTTGACTCAATATCTGGCGA 1139
||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1065 TGGTGGAGATAGTTGACTTTGTAAGCTCTATGTGAGAATAGTTAACTCAATATCTGGCGA 1124
Query 1140 CCAGACTATATGTTAAGATAAATAAGCGGGATCTCAAGTTGTTACTTGAGCAGGAGCAGA 1199
||||||||||| | | || | || || |||||||||||||||||
Sbjct 1125 CCAGACTATAT-TC----TCAA---G----ATG--AA------ACTTGAGCAGGAGCAGA 1164
Query 1200 TTGTATTGGTGTTTATAGTATCCAAGTAGTTCTCTGttttttttttATATTGGCCTTTGA 1259
||| | | ||| ||||| || || |||||||||| |||| ||| ||||||||||| ||
Sbjct 1165 TTGG-T-G-TGT--ATAGTGTCTAATTAGTTCTCTGGTTTTGTTTGATATTGGCCTT-GA 1218
Query 1260 TAGCGTTTTGTTAATCGGTCTAAG 1283
|||||||||| ||||||||||||
Sbjct 1219 AAGCGTTTTGTGAATCGGTCTAAG 1242
> Ahg485264 jgi|Araly1|485264|fgenesh2_kg.5__1256__AT3G49120.1
Length=1311
Score = 1393 bits (754), Expect = 0.0
Identities = 1026/1156 (89%), Gaps = 23/1156 (2%)
Strand=Plus/Plus
Query 1 ATCTTCTCCGTTAAACCCATTTAAATAG-TTTTCATTGTCCT-TGTGAAAAATGCAATTC 58
|||||||| | ||||| | | |||||| |||| || |||| | | ||||||||| |||
Sbjct 110 ATCTTCTCGGATAAACATAATCAAATAGATTTT-TTTTTCCTCTTTCAAAAATGCATTTC 168
Query 59 TCTTCATCTTCTATTACTTCTTTCACTTGGACAGTTTTAATCACAGTGGGATGTCTTATG 118
||||| ||||| ||| || |||||||||||| |||||||| ||||||||||| ||
Sbjct 169 TCTTCGTCTTC---TACATCGTTCACTTGGACAACCATAATCACATTGGGATGTCTTTTG 225
Query 119 CTTTGTGCGTCTTTCTCCGATGCTCAACTTACCCCTACTTTTTACGACACTTCATGTCCT 178
||| | | ||||| ||| |||||||||||||||| || || ||||| | ||||||||||
Sbjct 226 CTTCATTCATCTTTGTCCTATGCTCAACTTACCCCCACCTTCTACGATAGTTCATGTCCT 285
Query 179 ACCGTCACCAACATTGTAAGAGATACCATTGTCAACGAGCTAAGATCGGACCCTCGTATC 238
| |||||| ||||| ||| |||| |||||||| || ||| |||| |||||||||||||||
Sbjct 286 AACGTCACTAACATCGTACGAGAAACCATTGTAAATGAGTTAAGGTCGGACCCTCGTATC 345
Query 239 GCCGGGAGCATCCTTCGTCTTCACTTCCATGACTGCTTTGTTAATG---GTTGTGATGCT 295
|| | |||||||||||||||||||||||| |||||||||||||||| | ||||| ||
Sbjct 346 GCTGCGAGCATCCTTCGTCTTCACTTCCACGACTGCTTTGTTAATGTAAGCTGTGACGCA 405
Query 296 TCGATCTTGTTAGACAACACGACATCATTTCGAACAGAGAAAGATGCAC-TTGGAAATGC 354
|| |||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||
Sbjct 406 TCCATCTTGTTAGACAACACGACATCATTTCGAACAGAGAAAGATGC-CTTTGGAAACGC 464
Query 355 AAATTCAGCCCGAGGATTTCCAGTGATTGATAGAATGAAAGCTGCGGTGGAGAGGGCATG 414
|||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 465 AAATTCGGCTCGAGGATTTCCTGTGATTGATAGAATGAAAGCCGCGGTGGAGAGGGCATG 524
Query 415 CCCAAGAACCGTTTCATGCGCAGATATGCTCACCATTGCTGCTCAACAATCTGTCACTTT 474
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 525 CCCAAGAACCGTTTCGTGCGCAGATATGCTCACCATTGCAGCTCAACAATCTGTCACTTT 584
Query 475 GGCAGGAGGTCCTTCTTGGAAGGTTCCTTTAGGG-AGAAGAGACAGCTTACAAGCATTTC 533
|||||||||||||||||||| ||||||||| ||| || ||||||||||||||||||||||
Sbjct 585 GGCAGGAGGTCCTTCTTGGAGGGTTCCTTT-GGGAAGGAGAGACAGCTTACAAGCATTTC 643
Query 534 TAG-ATCTTGCTAACGCAAATCTTCCAGCTCCATTCTTCACACTTCCACAGCTTAAAGCC 592
| | |||| ||||| |||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 644 T-GAATCTCGCTAATGCAAATCTCCCAGCTCCATTCTTCACACTTCCAGAGCTTAAAGCC 702
Query 593 AACTTCAAAAATGTTGGCCTCGATCGTCCTTCTGATCTTGTTGCGCTCTCCGG-GGCTCA 651
| |||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 703 AGCTTCAAAAATGTTGGCCTCGATCGTCCTTCTGATCTTGTTGCTCTCTCCGGTGG-TCA 761
Query 652 CACATTTGGTAAAAATCAATGTCGA-TTCATTATGGACAGATTATACAACTTT-AGCAAC 709
||||||||||||||||||||||| | || ||| |||||||||||||||| ||| ||||||
Sbjct 762 CACATTTGGTAAAAATCAATGTC-AGTTTATTCTGGACAGATTATACAA-TTTCAGCAAC 819
Query 710 ACTGGATTACCTGACCCTACACTCAACACTACTTACCTCCAAACTCTTCGTGGTCAATGT 769
|| || ||||| |||||||| ||||| |||||||||||||||||||||||||| | |||
Sbjct 820 ACAGGTTTACCCGACCCTACCCTCAATACTACTTACCTCCAAACTCTTCGTGGACTATGC 879
Query 770 CCTCGCAATGGTAATCAAAGCGTCTTAGTGGATTTCGATCTGCGTACGCCTTTGGTTTTC 829
|| | ||||| |||| ||| | ||| || ||||| ||||| ||||||||| ||||||
Sbjct 880 CCCCTTAATGGCAATCGAAGTGCCTTGGTCGATTTTGATCTACGTACGCCTACAGTTTTC 939
Query 830 GACAACAAATACTATGTGAATCTTAAAGAGCAAAAAGGTCTTATCCAGAGCGACCAAGAG 889
|||||||||||||| |||||||| ||||||| ||||||||||||||||||||| ||||||
Sbjct 940 GACAACAAATACTACGTGAATCTCAAAGAGCTAAAAGGTCTTATCCAGAGCGATCAAGAG 999
Query 890 TTGTTCTCTAGCCCCAATGCCACTGACACAATCCCCTTGGTGAGAGCATATGCTGATGGC 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 TTGTTCTCTAGCCCCAATGCCACTGACACAATCCCCTTGGTGAGAGCATATGCTGATGGC 1059
Query 950 ACACAAACATTCTTCAATGCATTCGTGGAGGCAATGAATAGGATGGGAAATATTACACCA 1009
||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 1060 ACACAAACATTCTTCAATGCATTTGTGGAGGCGATGAATAGGATGGGAAACATTACACCT 1119
Query 1010 ACTACAGGAACTCAAGGACAAATCAGGTTGAATTGTAGAGTGGTGAACTCCAACTCTCTA 1069
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||
Sbjct 1120 ACTACAGGAACTCAAGGACAAATCAGGTTGAATTGTAGGGTGGTGAACTCCAACACACTG 1179
Query 1070 CTCCATGATGTGGTGGATATCGTTGACTTTGTAAGTTCTATGTGAGAATAGTTGACTCAA 1129
||||| ||||||||||| |||||||||||||| || ||||||||||||| ||| || |||
Sbjct 1180 CTCCAAGATGTGGTGGAGATCGTTGACTTTGTTAGCTCTATGTGAGAATTGTTTAC-CAA 1238
Query 1130 -TATCTGGCGACCAGA 1144
||| |||| || |||
Sbjct 1239 ATATGTGGCTACAAGA 1254
> Ahg326972 jgi|Araly1|326972|fgenesh1_pm.C_scaffold_6002192
Length=1068
Score = 1229 bits (665), Expect = 0.0
Identities = 936/1067 (88%), Gaps = 17/1067 (2%)
Strand=Plus/Plus
Query 57 TCT-CTTCATCTTCTAT-TACTTCTTTCACTTGGACAGTTTTAATCACAGTGGGATGTCT 114
||| |||| |||||| | |||||| ||||||||||| ||||||||| ||||||||||
Sbjct 10 TCTGCTTCTTCTTCT-TCTACTTCACTCACTTGGACAACCTTAATCACATTGGGATGTCT 68
Query 115 TATGCTTTGTGCGTCTTTCTCCGATGCTCAACTTACCCCTACTTTTTACGACACTTCATG 174
|||||| | ||| ||||| ||||||||||||||||||||||| || ||||||| ||||||
Sbjct 69 TATGCTATATGCCTCTTTGTCCGATGCTCAACTTACCCCTACCTTCTACGACAATTCATG 128
Query 175 TCCTACCGTCACCAACATTGTAAGAGATACCATTGTCAACGAGCTAAGATCGGACCCTCG 234
||||| || || ||||| ||| |||||||||||||||||||| |||| || ||||||||
Sbjct 129 TCCTAATGTTACTAACATCGTACGAGATACCATTGTCAACGAGTTAAGGTCAGACCCTCG 188
Query 235 TATCGCCGGGAGCATCCTTCGTCTTCACTTCCATGACTGCTTTGTTAATGGTTGTGATGC 294
|||||||| ||||||||| |||||||| ||||| ||||||||||| ||||||||||| ||
Sbjct 189 TATCGCCGCGAGCATCCTCCGTCTTCATTTCCACGACTGCTTTGTAAATGGTTGTGACGC 248
Query 295 TTCGATCTTGTTAGACAACACGACATCATTTCGAACAGAGAAAGATGCACTTGGAAATGC 354
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 249 ATCGATCTTGTTAGACAACACGACATCATTTCGAACAGAGAAAGATGCATTTGGAAACGC 308
Query 355 AAATTCAGCCCGAGGATTTCCAGTGATTGATAGAATGAAAGCTGCGGTGGAGAGGGCATG 414
|||||| || || |||||||| |||||||||||||||||||| || | |||| ||| ||
Sbjct 309 AAATTCGGCTCGGGGATTTCCCGTGATTGATAGAATGAAAGCCGCAATAGAGACGGCTTG 368
Query 415 CCCAAGAACCGTTTCATGCGCAGATATGCTCACCATTGCTGCTCAACAATCTGTCACTTT 474
|||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||
Sbjct 369 CCCAAGAACCGTTTCATGCGCAGATATGCTTACCATCGCGGCTCAACAATCTGTTACTTT 428
Query 475 GGCAGGAGGTCCTTCTTGGA-AGGTTCCTTTAGGGAGAAGAGACAGCTTACAAGCATTTC 533
||| |||||||||||||||| || ||||||| |||||||||||||||||||||||||||
Sbjct 429 GGCGGGAGGTCCTTCTTGGAGAG-TTCCTTTGGGGAGAAGAGACAGCTTACAAGCATTTT 487
Query 534 TAG-ATCTTGCTAACGCAAATCTTCCAGCTCCATTCTTC-ACACTTCCACAGCTTAAAGC 591
| | | || ||||| ||||||||||| | ||||| | || ||||||||||| |||||||
Sbjct 488 T-GCAACTCGCTAATGCAAATCTTCCTGGTCCAT-CATCCACACTTCCACAACTTAAAGA 545
Query 592 CA-ACTTCAAAAATGTTGGCCTCGATCGTCCTTCTGATCTTGTTGCGCTCTCCGG-GGCT 649
| | || | ||||||||||||| | |||||||||||||| ||||| || ||||| |||
Sbjct 546 TAGATTT-AGAAATGTTGGCCTCAACCGTCCTTCTGATCTCGTTGCTCTTTCCGGTGGC- 603
Query 650 CACACATTTGGTAAAAATCAATGTCGATTCATTATGGACAGATTATACAACTTTAGCAAC 709
||||||||||||||||| ||||| || || |||||| ||||| |||||||||| ||||||
Sbjct 604 CACACATTTGGTAAAAACCAATGCCGGTTTATTATGAACAGACTATACAACTTCAGCAAC 663
Query 710 ACTGGATTACCTGACCCTACACTCAACACTACTTACCTCCAAACTCTTCGTGG-TCAATG 768
|| || ||||| |||||| | ||||||||||||||||| ||||||||||| || | ||
Sbjct 664 ACCGGTTTACCCGACCCTTCTCTCAACACTACTTACCTACAAACTCTTCGCGGGTTG-TG 722
Query 769 TCCTCGCAATGGTAATCAAAGCGTCTTAGTGGATTTCGATCTGCGTACGCCTTTGGTTTT 828
||| || |||||||||| ||| | ||| |||||||| ||||||||||||||| ||||||
Sbjct 723 TCCCCGTAATGGTAATCTAAGTGCCTTGGTGGATTTTGATCTGCGTACGCCTACGGTTTT 782
Query 829 CGACAACAAATACTATGTGAATCTTAAAGAGCAAAAAGGTCTTATCCAGAGCGACCAAGA 888
||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||
Sbjct 783 CGACAACAAATACTATGTGAACCTTGGTGAGCGAAAAGGTCTTATCCAGAGCGACCAAGA 842
Query 889 GTTGTTCTCTAGCCCCAATGCCACTGACACAATCCCCTTGGTGAGAGCATATGCTGATGG 948
||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| || |
Sbjct 843 ATTGTTCTCTAGCCCCAATGCCACGGACACAATCCCTTTGGTGAGATCATATGCTAATAG 902
Query 949 CACACAAACATTCTTCAATGCATTCGTGGAGGCAATGAATAGGATGGGAAATATTACACC 1008
||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 903 CACACAAACCTTCTTCAATGCGTTTGTGGAGGCAATGAATAGGATGGGAAATATCACACC 962
Query 1009 AACT-ACAGGAACTCAAGGACAAATCAGGTTGAATTGTAGAGTGGTGAACTCCAACTCTC 1067
|| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 963 T-CTCACAGGAACTCAAGGACAAATCAGGTTGAATTGTAGGGTGGTGAATTCCAACTCTC 1021
Query 1068 TACTCCATGATGTGGTGGATATCGTTGACTTTGTAAGTTCTATGTGA 1114
||||||||||||| || || || ||||||||||| || |||||||||
Sbjct 1022 TACTCCATGATGTTGTTGAAATTGTTGACTTTGTTAGCTCTATGTGA 1068
> Ahg323056 jgi|Araly1|323056|fgenesh1_pm.C_scaffold_5000600
Length=1059
Score = 913 bits (494), Expect = 0.0
Identities = 854/1029 (83%), Gaps = 20/1029 (2%)
Strand=Plus/Plus
Query 96 TAATCACAGTGGGATGTCTTATGCTTTGTGCGT-C-TTTCTCCGATGCTCAACTTACCCC 153
|||| ||| |||| |||||| ||||| | | | | ||| | | |||||| || |||||
Sbjct 41 TAATAACATTGGGTTGTCTTCTGCTTCATTCATCCAATTC-CAG-TGCTCAGCTAACCCC 98
Query 154 TACTTTTTACGACACTTCATGTCCTACCGTCACCAACATTGTA-AGAGATACCATTGTCA 212
|| || || |||| | |||| || | |||| | ||| ||| || | ||||| || |
Sbjct 99 AACCTTCTATGACAATACATGCCCCAACGTCTTTACCATCGTACGGA-ACACCATCGTAA 157
Query 213 ACGAGCTAAGATCGGACCCTCGTATCGCCGGGAGCATCCTTCGTCTTCACTTCCATGACT 272
||||||||||||| || ||||||||||| | ||||||||||||||||||||||| ||||
Sbjct 158 ACGAGCTAAGATCAGATCCTCGTATCGCTGCAAGCATCCTTCGTCTTCACTTCCACGACT 217
Query 273 GCTTTGTTAATGGTTGTGATGCTTCGA-TCTTGTTAGACAACACGACATCATTTCGAACA 331
|||| || ||||| |||||||| |||| || ||||||||||||| ||||| |||| |||
Sbjct 218 GCTTCGTCAATGGCTGTGATGCATCGATTC-TGTTAGACAACACAACATCCTTTCAAACT 276
Query 332 GAGAAAGATGC-ACTTGGAAATGCAAATTCAGCCCGAGGATTTCCAGTGATTGATAGAAT 390
|||||||| || | | ||| ||||| || || ||||||||||||||||||||||||||
Sbjct 277 GAGAAAGACGCTGC-TCCAAACGCAAACTCGGCTCGAGGATTTCCAGTGATTGATAGAAT 335
Query 391 GAAAGCTGCGGTGGAGAGGGCATGCCCAAGAACCGTTTCATGCGCAGATATGCTCACCAT 450
|||||| || || |||| ||||| ||||| || ||||||||||||||||| || |||||
Sbjct 336 GAAAGCAGCAGTAGAGACAGCATGTCCAAGGACTGTTTCATGCGCAGATATACTTACCAT 395
Query 451 TGCTGCTCAACAATCTGTCACTTTGGCAGGAGGTCCTTCTTGGAAGGTTCCTTTAGGGAG 510
|| |||||||||||||| | | ||||||||||||||||||||| ||||||||| |||||
Sbjct 396 CGCAGCTCAACAATCTGTAAATCTGGCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGGAG 455
Query 511 AAGAGACAGCTTACAAGCATT-TCTAGATCTTGCTAACGCAAATCTTCCAGCTCCATTCT 569
|||||| |||||||||||||| | | | ||| ||||| ||||||||||| |||||||| |
Sbjct 456 AAGAGATAGCTTACAAGCATTCTTT-GCTCTCGCTAATGCAAATCTTCCCGCTCCATTTT 514
Query 570 TCACACTTCCACAGCTTAAAGCCAACTT-CAAAAATGTTGGCCTCGATCGTCCTTCTGAT 628
|||| || ||||| ||||| || | ||| ||||| |||||| || | ||||| ||||||
Sbjct 515 TCACGCTCCCACAACTTAAGGCTAGCTTTCAAAA-TGTTGGACTTAACCGTCCCTCTGAT 573
Query 629 CTTGTTGCGCTCTCCGG-GGCTCACACATTTGGTAAAAATCAATGTCGATTCATTATGGA 687
|| ||||| ||||| || || |||||||||||||||||| ||||| | ||| ||||||||
Sbjct 574 CTCGTTGCACTCTCTGGTGG-TCACACATTTGGTAAAAACCAATGCCAATTTATTATGGA 632
Query 688 CAGATTATACAACTTTAGCAACACTGGATTACCTGACCCTACACTCAACACTACTTACCT 747
|| |||||||||||||||||||||| ||||| |||||||| || || ||||| |||||
Sbjct 633 TAGGCTATACAACTTTAGCAACACTGGTTTACCCGACCCTACTCTTAATACTACATACCT 692
Query 748 CCAAACT-CTTCGTGGTCAATGTCCTCGCAATGGTAATCAAAGCGTCTTAGTGGATTTCG 806
||| | | |||||||| |||||||| || ||||||||||| | |||||| || |||||||
Sbjct 693 CCAGA-TACTTCGTGGACAATGTCCCCGGAATGGTAATCAGACCGTCTTGGTCGATTTCG 751
Query 807 ATCTGCGTACGCCTTTGGTTTTCGACAACAAATACTATGTGAATCTTAAAGAGCAAAAAG 866
|| | ||||| || |||||| ||||| ||||||||||||||||| ||||||| ||| |
Sbjct 752 ATTTTCGTACACCGACGGTTTTTGACAATAAATACTATGTGAATCTGAAAGAGCTAAAGG 811
Query 867 GTCTTATCCAGAGCGACCAAGAGTTGTTCTCTAGCCCCAATGCCACTGACACAATCCCCT 926
| |||||||||| ||| ||||||||||| || ||||| ||||||||||||||| ||||||
Sbjct 812 GACTTATCCAGACCGATCAAGAGTTGTTTTCCAGCCCTAATGCCACTGACACAGTCCCCT 871
Query 927 TGGTGAGAGCATATGCTGATGGCACACAAACATTCTTCAATGCATTCGTGGAGGCAATGA 986
||||||||| |||||| |||||||| |||| |||||||||||| || || || || ||||
Sbjct 872 TGGTGAGAGAATATGCCGATGGCACTCAAAAATTCTTCAATGCTTTTGTTGAAGCCATGA 931
Query 987 ATAGGATGGGAAATATTACACCAACT-ACAGGAACTCAAGGACAAATCAGGTTGAATTGT 1045
||||||||||||| |||||||| || || |||||||||||||||||||| |||||||
Sbjct 932 ATAGGATGGGAAACATTACACCT-CTCACTGGAACTCAAGGACAAATCAGACAGAATTGT 990
Query 1046 AGAGTGGTGAACTCCAACTCTCTACTCCATGATGTGGTGGATATCGTTGACTTTGTAAGT 1105
|| ||||| ||||||||||| || || ||||||||||| || || ||||||||||| ||
Sbjct 991 AGGGTGGTCAACTCCAACTCGCTGCTACATGATGTGGTTGAAATTGTTGACTTTGTCAGC 1050
Query 1106 TCTATGTGA 1114
||||| |||
Sbjct 1051 TCTATATGA 1059
> Ahg321537 jgi|Araly1|321537|fgenesh1_pm.C_scaffold_4001594
Length=1050
Score = 231 bits (125), Expect = 8e-60
Identities = 338/440 (77%), Gaps = 18/440 (4%)
Strand=Plus/Plus
Query 230 CCTCGTATCGCCGGGAGCATCCTTCGTCTTCACTTCCATGACTGCTTTGTTAATGGTTGT 289
|||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 175 CCTCGTATTGCCGCGAGCATCCTTCGTCTTCACTTCCATGACTGCTTTGTTCGTGGTTGT 234
Query 290 GATGCTTCGATCTTG-TTAGACAACACGACATCATTTCGAACAGAGAAAGATGCA-CTTG 347
||||| ||||||||| || ||||| | |||||||| || || ||||||||||| ||
Sbjct 235 GATGCATCGATCTTGCTT-GACAATTCCACATCATTCCGGACCGAGAAAGATGCTGCTCC 293
Query 348 GAAATGCAAATTCAGCCCGAGGATTTCCA-GTGATTGATAGAATGAAAGCTGCGGTGGAG 406
||| |||||| | |||| || | | || || |||||||||||| | || | |||
Sbjct 294 -AAACAAAAATTCGGTTAGAGGGTT-CAATGTCATAGATAGAATGAAATCAGCCCTTGAG 351
Query 407 AGGGCATGCCCAAGAACCGTTTCATGCGCAGATATGCTCACCATTGC-TGCTCAACA-AT 464
|| || ||||||||||| || || || |||||||| |||||||| || | ||||| | ||
Sbjct 352 AGAGCTTGCCCAAGAACAGTATCTTGTGCAGATATCCTCACCATCGCCT-CTCAA-ATAT 409
Query 465 CTGTCACTTTGG-CAGGAGGTCCTTCTTGGAAGGTTCCTTTAGGGAGAAGAGACAGCTTA 523
| || |||| | | || ||||| | ||| |||||| || ||||||||||||||| ||
Sbjct 410 CAGTG-CTTTTGTCTGGGGGTCCATGGTGGCCGGTTCCCTTGGGGAGAAGAGACAGCATA 468
Query 524 CAAGCATTTCTAGATCTTG-CTAACGCAAATCTTCCAGCTCCATTCTTCACACTTCCACA 582
|||| ||||| | | || |||| || |||||| ||||||| ||||| ||| | ||
Sbjct 469 GAAGC-TTTCTTCAACCTGGCTAATACAGCTCTTCCCTCTCCATTTTTCACTCTTACTCA 527
Query 583 GCTTAAAGCCAACTTCAAAA-ATGTTGGCCTCGATCGTCCTTCTGATCTTGTTGCGCTCT 641
|||||||| | ||| | |||||||| | || |||| ||||| || || || |
Sbjct 528 ACTTAAAGC-AGCTTTTGCTGACGTTGGCCTAAACCGGGCTTCGGATCTAGTCGCTCTTT 586
Query 642 CCGG-GGCTCACACATTTGG 660
|||| || ||||||||||||
Sbjct 587 CCGGTGG-TCACACATTTGG 605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51084708780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5