BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49120.1
Length=1321
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485264 jgi|Araly1|485264|fgenesh2_kg.5__1256__AT3G49120.1 2039 0.0
Ahg485262 jgi|Araly1|485262|fgenesh2_kg.5__1254__AT3G49110.1 1399 0.0
Ahg326972 jgi|Araly1|326972|fgenesh1_pm.C_scaffold_6002192 1330 0.0
Ahg323056 jgi|Araly1|323056|fgenesh1_pm.C_scaffold_5000600 994 0.0
> Ahg485264 jgi|Araly1|485264|fgenesh2_kg.5__1256__AT3G49120.1
Length=1311
Score = 2039 bits (1104), Expect = 0.0
Identities = 1250/1319 (95%), Gaps = 15/1319 (1%)
Strand=Plus/Plus
Query 7 AAACTATTCGTTTGCTGTTCTAGATAAAAGCCTTTAATTGAGAAAAAGAAAATGCCTCCA 66
|||| ||||||||||||||||||| ||||||||| ||||||| ||| ||||||||||||
Sbjct 1 AAACCATTCGTTTGCTGTTCTAGAGAAAAGCCTTCAATTGAG--AAA-AAAATGCCTCCA 57
Query 67 GCTTTGACCCGTTTTGCCTATAAAAGGATTC-TCTAAGATATGGACTTTCCTCATCTTCT 125
| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 58 GGTTTGACCCGTTTTGCCTATAAAAGGATTCTTC-AAGATATGGACTTTCCTCATCTTCT 116
Query 126 CGGGTAAACAGAATCAACTAG-TTTTGTTTTTCCTCTTTCAAAAATGCATTTCTCTTCGT 184
||| |||||| |||||| ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 117 CGGATAAACATAATCAAATAGATTTT-TTTTTCCTCTTTCAAAAATGCATTTCTCTTCGT 175
Query 185 CTTCAACATCGTCCACTTGGACAATCTTAATCACATTGGGATGTCTTATGCTTCATGCAT 244
|||| ||||||| ||||||||||| | |||||||||||||||||||| |||||||| |||
Sbjct 176 CTTCTACATCGTTCACTTGGACAACCATAATCACATTGGGATGTCTTTTGCTTCATTCAT 235
Query 245 CTTTGTCCGCTGCTCAACTCACCCCTACCTTCTACGATAGGTCATGTCCTAATGTCACTA 304
|||||||| ||||||||| ||||| |||||||||||||| ||||||||||| |||||||
Sbjct 236 CTTTGTCCTATGCTCAACTTACCCCCACCTTCTACGATAGTTCATGTCCTAACGTCACTA 295
Query 305 ACATCGTACGAGAAACCATTGTAAATGAGTTAAGGTCGGACCCTCGTATCGCTGCGAGCA 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 ACATCGTACGAGAAACCATTGTAAATGAGTTAAGGTCGGACCCTCGTATCGCTGCGAGCA 355
Query 365 TCCTTCGTCTTCACTTCCACGACTGCTTTGTTAATG---GTTGTGACGCATCCATCTTGT 421
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 356 TCCTTCGTCTTCACTTCCACGACTGCTTTGTTAATGTAAGCTGTGACGCATCCATCTTGT 415
Query 422 TAGACAACACGACATCATTTCGAACAGAGAAAGATGCGTTTGGAAACGCAAATTCGGCTC 481
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 416 TAGACAACACGACATCATTTCGAACAGAGAAAGATGCCTTTGGAAACGCAAATTCGGCTC 475
Query 482 GGGGATTTCCAGTGATTGATAGAATGAAAGCTGCGGTGGAGAGGGCATGCCCAAGAACCG 541
| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 476 GAGGATTTCCTGTGATTGATAGAATGAAAGCCGCGGTGGAGAGGGCATGCCCAAGAACCG 535
Query 542 TTTCATGCGCAGATATGCTCACCATTGCAGCTCAACAATCTGTCACTTTGGCAGGAGGTC 601
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TTTCGTGCGCAGATATGCTCACCATTGCAGCTCAACAATCTGTCACTTTGGCAGGAGGTC 595
Query 602 CTTCTTGGAGGGTTCCTTTGGGAAGGAGAGACAGTTTACAAGCATTCCTGGAA-CTCGCT 660
|||||||||||||||||||||||||||||||||| ||||||||||| ||| || ||||||
Sbjct 596 CTTCTTGGAGGGTTCCTTTGGGAAGGAGAGACAGCTTACAAGCATTTCTG-AATCTCGCT 654
Query 661 AATGCAAATCTTCCAGCTCCATTCTTTACACTTCCACAACTTAAAGCCAGCTTCAGAAAT 720
||||||||||| |||||||||||||| ||||||||| | |||||||||||||||| ||||
Sbjct 655 AATGCAAATCTCCCAGCTCCATTCTTCACACTTCCAGAGCTTAAAGCCAGCTTCAAAAAT 714
Query 721 GTTGGTCTCGATCGTCCTTCTGATCTCGTTGCTCTCTCCGGTGGTCACACATTTGGTAAA 780
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 715 GTTGGCCTCGATCGTCCTTCTGATCTTGTTGCTCTCTCCGGTGGTCACACATTTGGTAAA 774
Query 781 AATCAATGTCAGTTTATTCTTGACAGATTATACAATTTCAGCAACACAGGTTTACCCGAC 840
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 775 AATCAATGTCAGTTTATTCTGGACAGATTATACAATTTCAGCAACACAGGTTTACCCGAC 834
Query 841 CCTACACTCAACACTACTTACCTCCAAACTCTTCGTGGACTATGCCCCCTTAATGGCAAT 900
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CCTACCCTCAATACTACTTACCTCCAAACTCTTCGTGGACTATGCCCCCTTAATGGCAAT 894
Query 901 CGAAGTGCCTTGGTAGATTTTGATCTACGTACGCCTACGGTTTTCGACAACAAATACTAC 960
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 895 CGAAGTGCCTTGGTCGATTTTGATCTACGTACGCCTACAGTTTTCGACAACAAATACTAC 954
Query 961 GTGAATCTCAAAGAGCGAAAAGGTCTTATCCAGAGCGACCAAGAGTTGTTCTCTAGCCCC 1020
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 955 GTGAATCTCAAAGAGCTAAAAGGTCTTATCCAGAGCGATCAAGAGTTGTTCTCTAGCCCC 1014
Query 1021 AATGCCACTGACACAATCCCCTTGGTGAGAGCATATGCTGATGGCACACAAACATTCTTC 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 AATGCCACTGACACAATCCCCTTGGTGAGAGCATATGCTGATGGCACACAAACATTCTTC 1074
Query 1081 AATGCATTTGTGGAGGCAATGAATAGGATGGGAAACATTACACCAACTACAGGAACTCAA 1140
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1075 AATGCATTTGTGGAGGCGATGAATAGGATGGGAAACATTACACCTACTACAGGAACTCAA 1134
Query 1141 GGACAAATCAGATTGAACTGTAGAGTTGTGAACTCCAACTCTCTGCTCCATGATGTGGTG 1200
||||||||||| ||||| ||||| || |||||||||||| | |||||||| |||||||||
Sbjct 1135 GGACAAATCAGGTTGAATTGTAGGGTGGTGAACTCCAACACACTGCTCCAAGATGTGGTG 1194
Query 1201 GATATCGTTGACTTTGTTAGCTCTATGTGAGAATTGTTTACCCAATATGTGGCTACAAGA 1260
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1195 GAGATCGTTGACTTTGTTAGCTCTATGTGAGAATTGTTTACCAAATATGTGGCTACAAGA 1254
Query 1261 ATACATATATATTAATGAATAAAACTCTCAAGAC-GTTTACTTGAGAACATTTATTTTA 1318
|||||||||||||||||||||||||||||||| | ||| ||||||||| ||||| ||||
Sbjct 1255 ATACATATATATTAATGAATAAAACTCTCAAG-CTGTT-ACTTGAGAATATTTACTTTA 1311
> Ahg485262 jgi|Araly1|485262|fgenesh2_kg.5__1254__AT3G49110.1
Length=1242
Score = 1399 bits (757), Expect = 0.0
Identities = 966/1068 (90%), Gaps = 10/1068 (1%)
Strand=Plus/Plus
Query 198 CACTTGGACAATCTTAATCACATTGGGATGTCTTATGCTTCATGCATCTTTGTCCGCTGC 257
||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| |||
Sbjct 67 CACTTGGACAATCTTAATCACATTGGGATGTCTTATGCTTCGTGCGTCTCTGTCCGATGC 126
Query 258 TCAACTCACCCCTACCTTCTACGATAGGTCATGTCCTAATGTCACTAACATCGTACGAGA 317
|||||| ||||||||||||||||| | ||||||||||| ||||| ||||| ||| ||||
Sbjct 127 TCAACTTACCCCTACCTTCTACGACACTTCATGTCCTAACGTCACCAACATTGTAAGAGA 186
Query 318 AACCATTGTAAATGAGTTAAGGTCGGACCCTCGTATCGCTGCGAGCATCCTTCGTCTTCA 377
|||||||| || ||| |||| ||||||||||||||||| | ||||||||||||||||||
Sbjct 187 TACCATTGTGAACGAGCTAAGATCGGACCCTCGTATCGCCGGGAGCATCCTTCGTCTTCA 246
Query 378 CTTCCACGACTGCTTTGTTAATGGTTGTGACGCATCCATCTTGTTAGACAACACGACATC 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 CTTCCACGACTGCTTTGTTAATGGTTGTGACGCATCCATCTTGTTAGACAACACGACATC 306
Query 438 ATTTC-GAACAGAGAAAGATGCGTTTGGAAACGCAAATTCGGCTCGGGGATTTCCAGTGA 496
||||| || |||||||||||||| |||||||||||||||||||||| |||||||| ||||
Sbjct 307 ATTTCAGA-CAGAGAAAGATGCGCTTGGAAACGCAAATTCGGCTCGAGGATTTCCTGTGA 365
Query 497 TTGATAGAATGAAAGCTGCGGTGGAGAGGGCATGCCCAAGAACCGTTTCATGCGCAGATA 556
|||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 366 TTGATAGAATGAAAGCCGCGGTAGAGAGGGCATGCCCAAGAACCGTTTCGTGCGCAGATA 425
Query 557 TGCTCACCATTGCAGCTCAACAATCTGTCACTTTGGCAGGAGGTCCTTCTTGGAGGGTTC 616
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 426 TGCTCACCATTGCAGCTCAACAATCTGTCACTTTGGCAGGAGGTCCTTCTTGGAAGGTTC 485
Query 617 CTTTGGGAAGGAGAGACAGTTTACAAGCATTCCTGGAA-CTCGCTAATGCAAATCTTCCA 675
||||||| || |||||||| ||||||||||| || || ||||||||||||||||| |||
Sbjct 486 CTTTGGGGAGAAGAGACAGCTTACAAGCATTTCTA-AATCTCGCTAATGCAAATCTCCCA 544
Query 676 GCTCCATTCTTTACACTTCCACAACTTAAAGCCAGCTTCAGAAATGTTGGTCTCGATCGT 735
||||||||||| ||||||||| | |||||||||| ||||| ||| ||||| |||||||||
Sbjct 545 GCTCCATTCTTCACACTTCCAGAGCTTAAAGCCAACTTCAAAAAAGTTGGCCTCGATCGT 604
Query 736 CCTTCTGATCTCGTTGCTCTCTCCGGTGG-TCACACATTTGGTAAAAATCAATGTC-AGT 793
||||||||||| |||||||||||||| || |||||||||||||||||||||||||| | |
Sbjct 605 CCTTCTGATCTTGTTGCTCTCTCCGG-GGCTCACACATTTGGTAAAAATCAATGTCGA-T 662
Query 794 TTATTCTTGACAGATTATACAA-TTTCAGCAACACAGGTTTACCCGACCCTACACTCAAC 852
||||| | ||| |||||||||| ||| |||||||| || ||||| |||||||||||||||
Sbjct 663 TTATTATGGACCGATTATACAACTTT-AGCAACACCGGATTACCTGACCCTACACTCAAC 721
Query 853 ACTACTTACCTCCAAACTCTTCGTGGACTATGCCCCCTTAATGGCAATCGAAGTGCCTTG 912
|| |||||||| |||||||||||||||| ||| || | ||||| |||| ||||| ||
Sbjct 722 ACGACTTACCTACAAACTCTTCGTGGACAATGTCCTCGCAATGGTAATCAAAGTGTTTTA 781
Query 913 GTAGATTTTGATCTACGTACGCCTACGGTTTTCGACAACAAATACTACGTGAATCTCAAA 972
|| ||||| ||||| ||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 782 GTGGATTTCGATCTGCGTACGCCTTTAGTTTTCGACAACAAATACTATGTGAATCTCAAA 841
Query 973 GAGCGAAAAGGTCTTATCCAGAGCGACCAAGAGTTGTTCTCTAGCCCCAATGCCACTGAC 1032
|||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 842 GAGCAAAAAGGTCTTATCCAAAGCGATCAAGAGTTGTTCTCTAGCCCCAATGCCACAGAC 901
Query 1033 ACAATCCCCTTGGTGAGAGCATATGCTGATGGCACACAAACATTCTTCAATGCATTTGTG 1092
|| ||||||||||||||| ||| ||||||||||||| ||| |||||| |||| ||||||
Sbjct 902 ACGATCCCCTTGGTGAGATCATTTGCTGATGGCACAGAAAAATTCTTTGATGCGTTTGTG 961
Query 1093 GAGGCAATGAATAGGATGGGAAACATTACACCAACTACAGGAACTCAAGGACAAATCAGA 1152
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 962 GAGGCAATGAATAGGATGGGAAACATTACACCTACTACAGGATCTCAAGGACAAATCAGG 1021
Query 1153 TTGAACTGTAGAGTTGTGAACTCCAACTCTCTGCTCCATGATGTGGTGGATATCGTTGAC 1212
||||| |||||||| ||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 1022 TTGAATTGTAGAGTGGTGAACTCCAACTCTCTACTCCATGATGTGGTGGAGATAGTTGAC 1081
Query 1213 TTTGTTAGCTCTATGTGAGAATTGTTTACCCAATATGTGGCTACAAGA 1260
||||| |||||||||||||||| ||| || |||||| |||| || |||
Sbjct 1082 TTTGTAAGCTCTATGTGAGAATAGTTAACTCAATATCTGGCGACCAGA 1129
> Ahg326972 jgi|Araly1|326972|fgenesh1_pm.C_scaffold_6002192
Length=1068
Score = 1330 bits (720), Expect = 0.0
Identities = 947/1058 (90%), Gaps = 10/1058 (1%)
Strand=Plus/Plus
Query 178 TCTTCGTCTTCAACATCGTC-CACTTGGACAATCTTAATCACATTGGGATGTCTTATGCT 236
||||| ||||| || || | ||||||||||| |||||||||||||||||||||||||||
Sbjct 16 TCTTCTTCTTCTACTTC-ACTCACTTGGACAACCTTAATCACATTGGGATGTCTTATGCT 74
Query 237 -TCATGCATCTTTGTCCGCTGCTCAACTCACCCCTACCTTCTACGATAGGTCATGTCCTA 295
| |||| |||||||||| ||||||||| ||||||||||||||||| | ||||||||||
Sbjct 75 AT-ATGCCTCTTTGTCCGATGCTCAACTTACCCCTACCTTCTACGACAATTCATGTCCTA 133
Query 296 ATGTCACTAACATCGTACGAGAAACCATTGTAAATGAGTTAAGGTCGGACCCTCGTATCG 355
|||| ||||||||||||||||| |||||||| || ||||||||||| |||||||||||||
Sbjct 134 ATGTTACTAACATCGTACGAGATACCATTGTCAACGAGTTAAGGTCAGACCCTCGTATCG 193
Query 356 CTGCGAGCATCCTTCGTCTTCACTTCCACGACTGCTTTGTTAATGGTTGTGACGCATCCA 415
| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 194 CCGCGAGCATCCTCCGTCTTCATTTCCACGACTGCTTTGTAAATGGTTGTGACGCATCGA 253
Query 416 TCTTGTTAGACAACACGACATCATTTCGAACAGAGAAAGATGCGTTTGGAAACGCAAATT 475
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 254 TCTTGTTAGACAACACGACATCATTTCGAACAGAGAAAGATGCATTTGGAAACGCAAATT 313
Query 476 CGGCTCGGGGATTTCCAGTGATTGATAGAATGAAAGCTGCGGTGGAGAGGGCATGCCCAA 535
|||||||||||||||| |||||||||||||||||||| || | |||| ||| |||||||
Sbjct 314 CGGCTCGGGGATTTCCCGTGATTGATAGAATGAAAGCCGCAATAGAGACGGCTTGCCCAA 373
Query 536 GAACCGTTTCATGCGCAGATATGCTCACCATTGCAGCTCAACAATCTGTCACTTTGGCAG 595
||||||||||||||||||||||||| ||||| || |||||||||||||| |||||||| |
Sbjct 374 GAACCGTTTCATGCGCAGATATGCTTACCATCGCGGCTCAACAATCTGTTACTTTGGCGG 433
Query 596 GAGGTCCTTCTTGGAGGGTTCCTTTGGGAAGGAGAGACAGTTTACAAGCATTCCTGGAAC 655
|||||||||||||||| ||||||||||| || |||||||| ||||||||||| || |||
Sbjct 434 GAGGTCCTTCTTGGAGAGTTCCTTTGGGGAGAAGAGACAGCTTACAAGCATTTTTGCAAC 493
Query 656 TCGCTAATGCAAATCTTCCAGCTCCATTCTTT-ACACTTCCACAACTTAAAGCCAGCTTC 714
||||||||||||||||||| | ||||| | | ||||||||||||||||||| || ||
Sbjct 494 TCGCTAATGCAAATCTTCCTGGTCCAT-CATCCACACTTCCACAACTTAAAGATAGATTT 552
Query 715 AGAAATGTTGGTCTCGATCGTCCTTCTGATCTCGTTGCTCTCTCCGGTGGTCACACATTT 774
||||||||||| ||| | ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 553 AGAAATGTTGGCCTCAACCGTCCTTCTGATCTCGTTGCTCTTTCCGGTGGCCACACATTT 612
Query 775 GGTAAAAATCAATGTCAGTTTATTCTTGA-CAGATTATACAATTTCAGCAACACAGGTTT 833
|||||||| ||||| | ||||||| | || |||| ||||||| ||||||||||| |||||
Sbjct 613 GGTAAAAACCAATGCCGGTTTATTAT-GAACAGACTATACAACTTCAGCAACACCGGTTT 671
Query 834 ACCCGACCCTACACTCAACACTACTTACCTCCAAACTCTTCGTGGACTATGCCCCCTTAA 893
|||||||||| | ||||||||||||||||| ||||||||||| || | || |||| |||
Sbjct 672 ACCCGACCCTTCTCTCAACACTACTTACCTACAAACTCTTCGCGGGTTGTGTCCCCGTAA 731
Query 894 TGGCAATCGAAGTGCCTTGGTAGATTTTGATCTACGTACGCCTACGGTTTTCGACAACAA 953
||| |||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 732 TGGTAATCTAAGTGCCTTGGTGGATTTTGATCTGCGTACGCCTACGGTTTTCGACAACAA 791
Query 954 ATACTACGTGAATCTCAAAGAGCGAAAAGGTCTTATCCAGAGCGACCAAGAGTTGTTCTC 1013
|||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 792 ATACTATGTGAACCTTGGTGAGCGAAAAGGTCTTATCCAGAGCGACCAAGAATTGTTCTC 851
Query 1014 TAGCCCCAATGCCACTGACACAATCCCCTTGGTGAGAGCATATGCTGATGGCACACAAAC 1073
||||||||||||||| ||||||||||| ||||||||| |||||||| || ||||||||||
Sbjct 852 TAGCCCCAATGCCACGGACACAATCCCTTTGGTGAGATCATATGCTAATAGCACACAAAC 911
Query 1074 ATTCTTCAATGCATTTGTGGAGGCAATGAATAGGATGGGAAACATTACACCAACT-ACAG 1132
||||||||||| ||||||||||||||||||||||||||||| || ||||| || ||||
Sbjct 912 CTTCTTCAATGCGTTTGTGGAGGCAATGAATAGGATGGGAAATATCACACCT-CTCACAG 970
Query 1133 GAACTCAAGGACAAATCAGATTGAACTGTAGAGTTGTGAACTCCAACTCTCTGCTCCATG 1192
||||||||||||||||||| ||||| ||||| || ||||| ||||||||||| |||||||
Sbjct 971 GAACTCAAGGACAAATCAGGTTGAATTGTAGGGTGGTGAATTCCAACTCTCTACTCCATG 1030
Query 1193 ATGTGGTGGATATCGTTGACTTTGTTAGCTCTATGTGA 1230
|||| || || || ||||||||||||||||||||||||
Sbjct 1031 ATGTTGTTGAAATTGTTGACTTTGTTAGCTCTATGTGA 1068
> Ahg323056 jgi|Araly1|323056|fgenesh1_pm.C_scaffold_5000600
Length=1059
Score = 994 bits (538), Expect = 0.0
Identities = 901/1075 (84%), Gaps = 29/1075 (3%)
Strand=Plus/Plus
Query 169 ATGCATTTCTCTTCGTCTTCAACATCGTCCACTTGGACAATCTTAATCACATTGGGATGT 228
||| ||||||||| |||| | | ||| |||| ||||| | |||| |||||||| |||
Sbjct 1 ATGAATTTCTCTTATTCTT---CTTTGTCAACTTTGACAACCCTAATAACATTGGGTTGT 57
Query 229 CTTATGCTTCATGCAT-CTTTGTCC-GCTGCTCAACTCACCCCTACCTTCTACGATAGGT 286
||| |||||||| ||| | | ||| | |||||| || ||||| |||||||| || | |
Sbjct 58 CTTCTGCTTCATTCATCCAAT-TCCAG-TGCTCAGCTAACCCCAACCTTCTATGACA-AT 114
Query 287 -CATGTCCTAATGTCACTAACATCGTACGAGAA-ACCATTGTAAATGAGTTAAGGTCGGA 344
|||| || || ||| || ||||||||| ||| ||||| ||||| ||| |||| || ||
Sbjct 115 ACATGCCCCAACGTCTTTACCATCGTACG-GAACACCATCGTAAACGAGCTAAGATCAGA 173
Query 345 CCCTCGTATCGCTGCGAGCATCCTTCGTCTTCACTTCCACGACTGCTTTGTTAATGGTTG 404
|||||||||||||| |||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 174 TCCTCGTATCGCTGCAAGCATCCTTCGTCTTCACTTCCACGACTGCTTCGTCAATGGCTG 233
Query 405 TGACGCATCCA-TCTTGTTAGACAACACGACATCATTTCGAACAGAGAAAGATGCGT-TT 462
||| ||||| | || ||||||||||||| ||||| |||| ||| |||||||| || | |
Sbjct 234 TGATGCATCGATTC-TGTTAGACAACACAACATCCTTTCAAACTGAGAAAGACGC-TGCT 291
Query 463 GGAAACGCAAATTCGGCTCGGGGATTTCCAGTGATTGATAGAATGAAAGCTGCGGTGGAG 522
||||||||| |||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct 292 CCAAACGCAAACTCGGCTCGAGGATTTCCAGTGATTGATAGAATGAAAGCAGCAGTAGAG 351
Query 523 AGGGCATGCCCAAGAACCGTTTCATGCGCAGATATGCTCACCATTGCAGCTCAACAATCT 582
| ||||| ||||| || ||||||||||||||||| || ||||| |||||||||||||||
Sbjct 352 ACAGCATGTCCAAGGACTGTTTCATGCGCAGATATACTTACCATCGCAGCTCAACAATCT 411
Query 583 GTCACTTTGGCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGAAGGAGAGACAGTTTACAA 642
|| | | |||||||||||||||||||||||||||||||||| || ||||| || ||||||
Sbjct 412 GTAAATCTGGCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGGAGAAGAGATAGCTTACAA 471
Query 643 GCATTCCTGGAACTCGCTAATGCAAATCTTCCAGCTCCATTCTTT-ACACTTCCACAACT 701
|||||| | | |||||||||||||||||||| |||||||| ||| || || ||||||||
Sbjct 472 GCATTCTTTGCTCTCGCTAATGCAAATCTTCCCGCTCCATT-TTTCACGCTCCCACAACT 530
Query 702 TAAAGCCAGCTT-CAGAAATGTTGGTCTCGATCGTCCTTCTGATCTCGTTGCTCTCTCCG 760
||| || ||||| || ||||||||| || | ||||| |||||||||||||| ||||| |
Sbjct 531 TAAGGCTAGCTTTCA-AAATGTTGGACTTAACCGTCCCTCTGATCTCGTTGCACTCTCTG 589
Query 761 GTGGTCACACATTTGGTAAAAATCAATGTCAGTTTATTCTTGACAGATTATACAA-TTTC 819
|||||||||||||||||||||| ||||| || |||||| | || || ||||||| |||
Sbjct 590 GTGGTCACACATTTGGTAAAAACCAATGCCAATTTATTATGGATAGGCTATACAACTTT- 648
Query 820 AGCAACACAGGTTTACCCGACCCTACACTCAACACTACTTACCTCCAAACT-CTTCGTGG 878
|||||||| ||||||||||||||||| || || ||||| |||||||| | | ||||||||
Sbjct 649 AGCAACACTGGTTTACCCGACCCTACTCTTAATACTACATACCTCCAGA-TACTTCGTGG 707
Query 879 ACTATGCCCCCTTAATGGCAATC-GAA-GTGCCTTGGTAGATTTTGATCTACGTACGCCT 936
|| ||| |||| ||||| |||| || || | ||||| ||||| ||| | ||||| ||
Sbjct 708 ACAATGTCCCCGGAATGGTAATCAGACCGT-C-TTGGTCGATTTCGATTTTCGTACACCG 765
Query 937 ACGGTTTTCGACAACAAATACTACGTGAATCTCAAAGAGCGAAAAGGTCTTATCCAGAGC 996
|||||||| ||||| |||||||| |||||||| ||||||| ||| || |||||||||| |
Sbjct 766 ACGGTTTTTGACAATAAATACTATGTGAATCTGAAAGAGCTAAAGGGACTTATCCAGACC 825
Query 997 GACCAAGAGTTGTTCTCTAGCCCCAATGCCACTGACACAATCCCCTTGGTGAGAGCATAT 1056
|| ||||||||||| || ||||| ||||||||||||||| ||||||||||||||| ||||
Sbjct 826 GATCAAGAGTTGTTTTCCAGCCCTAATGCCACTGACACAGTCCCCTTGGTGAGAGAATAT 885
Query 1057 GCTGATGGCACACAAACATTCTTCAATGCATTTGTGGAGGCAATGAATAGGATGGGAAAC 1116
|| |||||||| |||| |||||||||||| ||||| || || ||||||||||||||||||
Sbjct 886 GCCGATGGCACTCAAAAATTCTTCAATGCTTTTGTTGAAGCCATGAATAGGATGGGAAAC 945
Query 1117 ATTACACCAACT-ACAGGAACTCAAGGACAAATCAGATTGAACTGTAGAGTTGTGAACTC 1175
|||||||| || || ||||||||||||||||||||| ||| ||||| || || |||||
Sbjct 946 ATTACACCT-CTCACTGGAACTCAAGGACAAATCAGACAGAATTGTAGGGTGGTCAACTC 1004
Query 1176 CAACTCTCTGCTCCATGATGTGGTGGATATCGTTGACTTTGTTAGCTCTATGTGA 1230
|||||| ||||| ||||||||||| || || ||||||||||| |||||||| |||
Sbjct 1005 CAACTCGCTGCTACATGATGTGGTTGAAATTGTTGACTTTGTCAGCTCTATATGA 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49407300432
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5