BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49130.1
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937685 jgi|Araly1|937685|scaffold_501876.1 147 2e-34
> Ahg937685 jgi|Araly1|937685|scaffold_501876.1
Length=2944
Score = 147 bits (79), Expect = 2e-34
Identities = 110/125 (88%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 676 TTGATGAAGAAAGTTGTTATGAAACCTCAGTTTAAGTTCATGGAGCCAACAAAT-AGCGT 734
||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct 2148 TTGATGAAGGAAGTTGTTATGAAACCTCAGTTTAAGTTTATGGAGCCAACTAATCAGAA- 2206
Query 735 GTTCGGTTTATATAATGTTGTTGTTGATGCGTATTCTAGAGTAGTAAAGCCTTCTGATGA 794
|||| |||| |||||||| ||||| ||||||||||| ||||||||| | |||| ||||||
Sbjct 2207 GTTCAGTTTGTATAATGTGGTTGTCGATGCGTATTCCAGAGTAGTATACCCTTTTGATGA 2266
Query 795 TGCTT 799
|||||
Sbjct 2267 TGCTT 2271
Score = 111 bits (60), Expect = 7e-24
Identities = 79/88 (90%), Gaps = 2/88 (2%)
Strand=Plus/Plus
Query 803 CTTCAATGGGGATGATGCAAACTGCACGA-CCAGAGGAACCAGAGGCAAAGAGACAAAAG 861
|||||| | || |||||||||||||| || ||| ||||||||||| ||||||||||||||
Sbjct 2584 CTTCAACGTGGTTGATGCAAACTGCAGGACCCA-AGGAACCAGAGACAAAGAGACAAAAG 2642
Query 862 TTTGACGAGTCAGCTCTTAATCCAGAAG 889
|||||||||||||||||| ||||||||
Sbjct 2643 TTTGACGAGTCAGCTCTTGTTCCAGAAG 2670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34272502383
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5