BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49140.1
Length=1886
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485272 jgi|Araly1|485272|fgenesh2_kg.5__1264__AT3G49140.1 1648 0.0
Ahg348010 jgi|Araly1|348010|fgenesh1_pg.C_scaffold_5001402 944 0.0
Ahg897766 jgi|Araly1|897766|Al_scaffold_0005_1732 811 0.0
Ahg894293 jgi|Araly1|894293|Al_scaffold_0006_2289 808 0.0
> Ahg485272 jgi|Araly1|485272|fgenesh2_kg.5__1264__AT3G49140.1
Length=3784
Score = 1648 bits (892), Expect = 0.0
Identities = 1027/1090 (94%), Gaps = 18/1090 (2%)
Strand=Plus/Plus
Query 614 GCAAGTTATAGTTGGTTTTGATACGATGGAGATGATCAAGGAAATGGAGCTGATGGGACT 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2697 GCAAGTTATAGTTGGTTTTGATACGATGGAGATGATCAAGGAAATGGAGCTGATGGGTCT 2756
Query 674 TTCTGATAGTGACTTTGAAACTGAAGATGATGAAAGTGGAGATGATGACAGTGAGGATAC 733
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2757 TTCTGATAGTGACTTTGAAACTGAAGATGATGAAAGTGGAGAGGATGACAGTGAGGATAC 2816
Query 734 AGGAGAAGACGAAGATGAGGAGGAATGGGTTGCTATTTTAGAGgatgaagatg-a-a-ga 790
|||||||||||||||||||||||||||||||||| || ||||||||||||||| | | ||
Sbjct 2817 AGGAGAAGACGAAGATGAGGAGGAATGGGTTGCTGTTCTAGAGGATGAAGATGAAGACGA 2876
Query 791 cgatgatgat---gatgatgatgatgatgaggatgatgatgattctgattctgatgaATC 847
|||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 2877 CGATGATGATGAGGATGATGATGATGATGATGATGATGATGATTCTGATTCCGATGAATC 2936
Query 848 GCTGGGAGACTGGGCAAATTTGGAAACAATGAGGAGTTGTCATCCCATGTTTTTTGCAAA 907
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2937 GCTGGGAGACTGGGCAAATTTGGAAACAATGAGGAGTTGCCATCCCATGTTTTTTGCAAA 2996
Query 908 GAGAATGACTGAGGTTGCTTCAAATGATCCTGTTGATTGGATGGATCAGCCGTCTGCTGG 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2997 GAGAATGACTGAGGTTGCTTCAAATGATCCTGTTGATTGGATGGATCAGCCGTCTGCTGG 3056
Query 968 CCTTGCTATCCAGGGACTTTTGAGTCATATCTTAGTGGAAGATTATTCAGATATCCAAAA 1027
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3057 CCTTGCTATCCAGGGACTTCTGAGTCATATCTTAGTGGAAGATTATTCAGATATCCAAAA 3116
Query 1028 GAAACTTGCTGATAGCAATTCTACAACTA--A-CGGAAACAAGGATGCAGAAAACTTAGT 1084
||||||||||||||| ||||||||||| | | | ||||||||||||||||||||||||
Sbjct 3117 GAAACTTGCTGATAGTAATTCTACAACCACGAACAGAAACAAGGATGCAGAAAACTTAGA 3176
Query 1085 GGACAAGCTTGAAGACAATAGTAAGGCAGGTGGTGACGAATCTGAGATAGATTCATCACA 1144
|| ||||||| ||||| ||||||||| |||| ||| |||||||| |||||||| || ||
Sbjct 3177 AGAAAAGCTTGCAGACATTAGTAAGGCTGGTGCTGAAGAATCTGACATAGATTCGTCGCA 3236
Query 1145 GGATGAAAAAGCAAGAAATGTGGTGGCGTTTTACAAGCTGGAGATGATAAGAATTCAGCT 1204
|| |||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3237 GGGTGAAAAAGAAAGAACTGTGGTGGCATTTTACAAGCTGGAGATGATAAGAATTCAGCT 3296
Query 1205 TATCACAGCACAAGGGGATCAGACTGAAGTTGAGGTGGAAGATGTCAGAAAAGCACAACC 1264
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3297 TATTACAGCACAAGGGGATCAGACTGAAGTTGAGGTGGAAGATGTCAGAAAAGCACAACC 3356
Query 1265 TGATGCTATTGCTCATGCATCAGCTGAAATCATAAGCCGTTTAGAAGAATCTGGTGATAA 1324
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 3357 TGATGCTATTGCTCATGCATCAGCTCAAATCATAAGCCGTTTAGAAGAATCTGGTGATAA 3416
Query 1325 AATAACTGAAGCACTCAAATCTCTGTGTTGGAGACATAACAGTATTCAAGCAGAGGAAGT 1384
| |||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 3417 ACTAACTGAAGCCCTCAAATCTCTGTGTTGGAGACATAACGGTATTCTAGCAGAGGAAGT 3476
Query 1385 GAAGCTGATTGGGATAGATTCCCTAGGTTTTGACCTCAGGCTTTGCGCAGGAGCAAAGAT 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3477 GAAGCTGATTGGGATAGATTCCCTAGGTTTTGACCTCAGGCTTTGCGCAGGAGCAAAGAT 3536
Query 1445 TGAGTCATTGCGATTTGCATTCTCGACAAGGGCAACATCAGAAGAAAACGCAGAGGGACA 1504
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3537 TGAGTCATTGCGGTTTGCATTCTCGACAAGGGCAACATCAGAAGAAAATGCAGAGGGACA 3596
Query 1505 AATAAGAAAACTATTATTCCCGAAAACGAACCAGTCGACACAACCAAAACCAAAATGAAC 1564
||| ||| ||||||||||||||| |||||||||| |||| ||||| ||||| |||||| |
Sbjct 3597 AATTAGAGAACTATTATTCCCGACAACGAACCAGGCGACGCAACCGAAACCGAAATGAGC 3656
Query 1565 AAGTCAGAGGGAATGTTGACGCTGTAGTAATCTTCTGTGAAGCTGCA--GAGAA--CAGT 1620
|||||||| |||||||||| |||||||||||||||||||| |||||| ||||| ||||
Sbjct 3657 AAGTCAGAAGGAATGTTGATGCTGTAGTAATCTTCTGTGACGCTGCACAGAGAAAACAGT 3716
Query 1621 TCCATGAACCAAAATCCAAACAAGCAA-TGCA-TATGTTT-CTGGAACAAATATGAACAA 1677
||||||||||||||||||||||||||| | || ||||||| | |||||||||||||||||
Sbjct 3717 TCCATGAACCAAAATCCAAACAAGCAAAT-CAGTATGTTTTC-GGAACAAATATGAACAA 3774
Query 1678 GTTCTTGGAG 1687
||||||||||
Sbjct 3775 GTTCTTGGAG 3784
Score = 987 bits (534), Expect = 0.0
Identities = 585/610 (96%), Gaps = 2/610 (0%)
Strand=Plus/Plus
Query 6 GCTTCTGAGCTCAGAGATAGAGAGAGCGAGAGGTTAGAGATAACAGTAGTTTTACCGATG 65
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2044 GCTTCTGAGCTCAGAGATAGAGAGAGCGAGAGGTTAGAGATAGTAGTAGTTTTACCGATG 2103
Query 66 ATTGAGTCGGTTATGGCCGTTCGTCTCTCCACCGGATTTTGCTCGTCGACGGCGTTACTC 125
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2104 ATTGAGTCGGTTATGGCCGTCCGTCTCTCCACCGGATTTTGCTCGTCGACGGCGTTACTC 2163
Query 126 CAGTATCGTACAGCACCGAGCTCGGAGGAGGGAGGAAACTGCTTCCATTATGCGTCCCGC 185
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2164 CAGTATCGTAGTGCACCGAGCTCGGAGGAGGGAGGAAACTGCTTCCATTATGCGTCCCGC 2223
Query 186 CGCGTTTTTCAGCCTCAACGTATCCACCATATTGATGGGAGTGGGTTTCTGAAGTACAAC 245
||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||
Sbjct 2224 CGCGTTTTTCAGCCTCAACGTCTCAACCATATTGATGGGAGTGGATTTCTGAAGTACAAC 2283
Query 246 AGTGACTATATAACAAGAAAACACCT-ACGGAAGAATCGAACTCAAGCCACAGCTGAGTA 304
||||||||| |||| ||||||||||| | ||||||||||||| ||||||||||| |||||
Sbjct 2284 AGTGACTATTTAACTAGAAAACACCTGA-GGAAGAATCGAACGCAAGCCACAGCCGAGTA 2342
Query 305 TGTAGATTCAGCTTCAGATCCAGAAAAGCAAACTGGCAAGTCAAGGTATCATCCTTCAGA 364
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 2343 CGTAGATTCAGCTTCAGATCCAGGAAAGCAAACTGGGAAGTCAAGGTATCATCCTTCAGA 2402
Query 365 AGAAATCAGAGCCTCTTTGCCACAGAATGATGGAGATTCCAGGCTTTCACCTGCAGAAAC 424
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2403 AGAAATAAGAGCCTCTTTGCCACAGAATGCCGGAGATTCCAGGCTTTCACCTGCAGAAAC 2462
Query 425 TACTAGAACCATCATTGAGGTGAACAATAAAGGAACCCTGATGCTTACAGGTTCTATTGG 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2463 TACTAGAACCATCATTGAGGTGAACAATAAAGGAACCCTGATGCTTACAGGTTCAATTGG 2522
Query 485 TGATGGAGTTCATGAGAATATTCTCTGGCCAGATATACCTTATATAACAGATCAAAATGG 544
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2523 TGATGGAGTTCATGAGAATATTCTCTGGCCAGATATACCTTACATAACAGATCAGAATGG 2582
Query 545 AAATTTATACTTTCAAGTAAAGGAGGATGAGGACGTCATGCAGTCCGTTACTTCTGAAAA 604
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2583 AAATTTGTACTTTCAAGTAAAGGAGGATGAGGATGTCATGCAGTCCGTTACTTCTGAAAA 2642
Query 605 TAATTATGTG 614
||||||||||
Sbjct 2643 TAATTATGTG 2652
> Ahg348010 jgi|Araly1|348010|fgenesh1_pg.C_scaffold_5001402
Length=1044
Score = 944 bits (511), Expect = 0.0
Identities = 645/708 (91%), Gaps = 15/708 (2%)
Strand=Plus/Plus
Query 825 gatgattctgattctgatgaATCGCTGGGAGACTGGGCAAATTTGGAAACAATGAGGAGT 884
|||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 343 GATGATGATGATGATGATGAATCGCTGGCAGACTGGGCAAATTTGGAAACAATGAGGAGT 402
Query 885 TGTCATCCCATG---TTTTTTGCAAAGAGAATGACTGAGGTTGCTTCAAATGATCCTGTT 941
|| ||||||||| |||||| ||||||||||||||||||||||||| |||||| ||||
Sbjct 403 TGCCATCCCATGTTTTTTTTTTTAAAGAGAATGACTGAGGTTGCTTCAGATGATCTTGTT 462
Query 942 GATTGGATGGATCAGCCGTCTGCTGGCCTTGCTATCCAGGGACTTTTGAGTCATATCTTA 1001
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 463 GATTGGATGGATCAGCCGTCTGCTGGCCTTGCTATCCAGGGAATTCTGAGTCATATCTTA 522
Query 1002 GTGGAAGATTATTCAGATATCCAAAAGAAACTTGCTGATAGCAATTCTACAACTA--A-C 1058
||||||||||||||||||||||||| |||||||||||||| ||||||||||| || | |
Sbjct 523 GTGGAAGATTATTCAGATATCCAAAGGAAACTTGCTGATAACAATTCTACAAGTACGAAC 582
Query 1059 GGAAACAAGGATGCAGAAAACTTAGTGGACAAGCTTGAAGACAATAGTAAGGCAGGTGGT 1118
|||||||||||||||||||||||| || ||||||| ||||| |||||||||| |||||
Sbjct 583 AGAAACAAGGATGCAGAAAACTTAGAAGAAAAGCTTGCAGACATTAGTAAGGCATGTGGT 642
Query 1119 GACGAATCTGAGATAGATTCATCACAGGATGAAAAAGCAAGAAATGTGGTGGCGTTTTAC 1178
|| |||||||| ||||||||||| |||| |||||||| ||||| ||||||||| ||||||
Sbjct 643 GAAGAATCTGACATAGATTCATCGCAGGGTGAAAAAGAAAGAACTGTGGTGGCATTTTAC 702
Query 1179 AAGCTGGAGATGATAAGAATTCAGCTTATCACAGCACAAGGGGATCAGACTGAAGTTGAG 1238
||||||||||||||||||||||||||||| ||| |||||| | | || ||||||
Sbjct 703 AAGCTGGAGATGATAAGAATTCAGCTTATTACACCACAAGC---T--G---GA-GTTGAG 753
Query 1239 GTGGAAGATGTCAGAAAAGCACAACCTGATGCTATTGCTCATGCATCAGCTGAAATCATA 1298
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 754 GTGGAAGATGTCAGAAAAGCACAACCTGATGTTATTGCTCATGCATCAGCTGGAATCATA 813
Query 1299 AGCCGTTTAGAAGAATCTGGTGATAAAATAACTGAAGCACTCAAATCTCTGTGTTGGAGA 1358
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 814 AGCCGTTTAGAAGAATCTGGTGATAAAGTAACTGAAGCCCTCAAATCTCTGTGTTGGAGA 873
Query 1359 CATAACAGTATTCAAGCAGAGGAAGTGAAGCTGATTGGGATAGATTCCCTAGGTTTTGAC 1418
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 874 CATAATGGTATTCAAGCAGAGGAAGTGAAGCTGATTGGGGTAGATTCCCTAGGTTTTGAC 933
Query 1419 CTCAGGCTTTGCGCAGGAGCAAAGATTGAGTCATTGCGATTTGCATTCTCGACAAGGGCA 1478
||||||||||||||||||||||| ||||||||||| || |||||||||| ||||||||||
Sbjct 934 CTCAGGCTTTGCGCAGGAGCAAAAATTGAGTCATTTCGGTTTGCATTCTTGACAAGGGCA 993
Query 1479 ACATCAGAAGAAAACGCAGAGGGACAAATAAGAAAACTATTATTCCCG 1526
||||||||||| || |||||||||| ||||||| | ||||||||||||
Sbjct 994 ACATCAGAAGACAATGCAGAGGGACGAATAAGAGAGCTATTATTCCCG 1041
Score = 289 bits (156), Expect = 6e-77
Identities = 174/183 (95%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 614 GCAAGTTATAGTTGGTTTTGATACGATGGAGATGATCAAGGAAATGGAGCTGATGGGACT 673
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 GCAAGTTATAGTAGGTTTTGATACGATGGAGATGATCAAGGAAATGGAGCTGATGGGTCT 239
Query 674 TTCTGATAGTGACTTTGAAACTGAAGATGATGAAAGTGGAGATGATGACAGTGAGGATAC 733
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 TTCTGATAGTGACTTTGAAACTGAAGATGATGAAAGTGGAGAAGATGACAGTGAGGATAC 299
Query 734 AGGAGAAGACGAAGATGAGGAGGAATGGGTTGCTATTTTAGAGgatgaagatgaagacga 793
||||||||||||| |||||||||||||||||||| || |||||||||| ||||| || ||
Sbjct 300 AGGAGAAGACGAATATGAGGAGGAATGGGTTGCTGTTCTAGAGGATGATGATGATGATGA 359
Query 794 tga 796
|||
Sbjct 360 TGA 362
> Ahg897766 jgi|Araly1|897766|Al_scaffold_0005_1732
Length=2361
Score = 811 bits (439), Expect = 0.0
Identities = 557/612 (91%), Gaps = 15/612 (2%)
Strand=Plus/Plus
Query 918 GAGGTTGCTTCAAATGATCCTGTTGATTGGATGGATCAGCCGTCTGCTGGCCTTGCTATC 977
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1759 GAGGTTGCTTCAGATGATCTTGTTGATTGGATGGATCAGCCGTCTGCTGGCCTTGCTATC 1818
Query 978 CAGGGACTTTTGAGTCATATCTTAGTGGAAGATTATTCAGATATCCAAAAGAAACTTGCT 1037
|||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1819 CAGGGAATTCTGAGTCATATCTTAGTGGAAGATTATTCAGATATCCAAAGGAAACTTGCT 1878
Query 1038 GATAGCAATTCTAC-A--ACTAACGGAAACAAGGATGCAGAAAACTTAGTGGACAAGCTT 1094
|||| ||||||||| | || ||| |||||||||||||||||||||||| || ||||||
Sbjct 1879 GATAACAATTCTACAAGTACGAACAGAAACAAGGATGCAGAAAACTTAGAAGAAAAGCTT 1938
Query 1095 GAAGACAATAGTAAGGCAGGTGGTGACGAATCTGAGATAGATTCATCACAGGATGAAAAA 1154
| ||||| |||||||||| ||||||| |||||||| ||||||||||| |||| |||||||
Sbjct 1939 GCAGACATTAGTAAGGCATGTGGTGAAGAATCTGACATAGATTCATCGCAGGGTGAAAAA 1998
Query 1155 GCAAGAAATGTGGTGGCGTTTTACAAGCTGGAGATGATAAGAATTCAGCTTATCACAGCA 1214
| ||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1999 GAAAGAACTGTGGTGGCATTTTACAAGCTGGAGATGATAAGAATTCAGCTTATTACA-C- 2056
Query 1215 CAAGGGGATCAGACTGAAGTTGAGGTGGAAGATGTCAGAAAAGCACAACCTGATGCTATT 1274
| | | || ||| | |||||||||||||||||||||||||||||||||| ||||
Sbjct 2057 C-A---CA--AG-CTG--G-AGAGGTGGAAGATGTCAGAAAAGCACAACCTGATGTTATT 2106
Query 1275 GCTCATGCATCAGCTGAAATCATAAGCCGTTTAGAAGAATCTGGTGATAAAATAACTGAA 1334
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2107 GCTCATGCATCAGCTGGAATCATAAGCCGTTTAGAAGAATCTGGTGATAAAGTAACTGAA 2166
Query 1335 GCACTCAAATCTCTGTGTTGGAGACATAACAGTATTCAAGCAGAGGAAGTGAAGCTGATT 1394
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2167 GCCCTCAAATCTCTGTGTTGGAGACATAATGGTATTCAAGCAGAGGAAGTGAAGCTGATT 2226
Query 1395 GGGATAGATTCCCTAGGTTTTGACCTCAGGCTTTGCGCAGGAGCAAAGATTGAGTCATTG 1454
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2227 GGGGTAGATTCCCTAGGTTTTGACCTCAGGCTTTGCGCAGGAGCAAAAATTGAGTCATTT 2286
Query 1455 CGATTTGCATTCTCGACAAGGGCAACATCAGAAGAAAACGCAGAGGGACAAATAAGAAAA 1514
|| |||||||||| ||||||||||||||||||||| || |||||||||| ||||||| |
Sbjct 2287 CGGTTTGCATTCTTGACAAGGGCAACATCAGAAGACAATGCAGAGGGACGAATAAGAGAG 2346
Query 1515 CTATTATTCCCG 1526
||||||||||||
Sbjct 2347 CTATTATTCCCG 2358
Score = 241 bits (130), Expect = 2e-62
Identities = 138/142 (97%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 615 CAAGTTATAGTTGGTTTTGATACGATGGAGATGATCAAGGAAATGGAGCTGATGGGACTT 674
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1621 CAAGTTATAGTAGGTTTTGATACGATGGAGATGATCAAGGAAATGGAGCTGATGGGTCTT 1680
Query 675 TCTGATAGTGACTTTGAAACTGAAGATGATGAAAGTGGAGATGATGACAGTGAGGATACA 734
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1681 TCTGATAGTGACTTTGAAACTGAAGATGATGAAAGTGGAGAAGATGACAGTGAGGATACA 1740
Query 735 GGAGAAGACGAAGATGAGGAGG 756
|||||||||||| |||||||||
Sbjct 1741 GGAGAAGACGAATATGAGGAGG 1762
> Ahg894293 jgi|Araly1|894293|Al_scaffold_0006_2289
Length=1398
Score = 808 bits (437), Expect = 0.0
Identities = 1062/1350 (79%), Gaps = 98/1350 (7%)
Strand=Plus/Plus
Query 226 GTGGGTTTCTGAAGTACAACAGTGACTATATAACAAGAAAACACCTACGGAAGAATCGAA 285
|||| ||||| |||| | |||||||||| | |||||||||||||| |||| |||| | |
Sbjct 53 GTGGATTTCTCAAGTGTAGCAGTGACTATCTTACAAGAAAACACCTGCGGAGGAATAGGA 112
Query 286 CTCAAGCCACAGCTGAGTATGTAGATTCAGCTTCAGATCCAGAA-AAGCAAACTGGCAAG 344
||||||||| ||| |||||| ||| ||||||||||||||| || |||| |||||| |||
Sbjct 113 CTCAAGCCATAGCAGAGTATTTAGGTTCAGCTTCAGATCC-TAAGAAGCCAACTGGGAAG 171
Query 345 TCAAGGTATCATCCTTCAGAAGAAATCAGAGCCTCTTTGCC--A-CAGAATGATGGAGAT 401
||||| ||||||||||| |||||||||||||| | | |||| | ||||| |||||||
Sbjct 172 TCAAGTTATCATCCTTCCGAAGAAATCAGAGCTTATGTGCCAGAGAAGAATCCTGGAGAT 231
Query 402 TCCAGGCTTTCACCTGCAGAAACTACTAGAACCATCATTGAGGTGAACAATAAAGGAACC 461
|| |||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 232 TCTAGGCTTTCACCTCCAGAAACTGCTAGAACCATCATTGAGGTGAACAAAAAAGGAACC 291
Query 462 CTGATGCTTACAGGTTCTA-TTGGTGA-TGGAGTTCATGAGAATATTCTCTGGCCAGATA 519
||||||||| |||||| || ||||| | ||||||||||||||||||||||||||| ||||
Sbjct 292 CTGATGCTTTCAGGTT-TACTTGGT-ATTGGAGTTCATGAGAATATTCTCTGGCCCGATA 349
Query 520 TACCTTATATAACAGATCAAAATGGAAATTTATACTTTCAAGTAAAGGAGGATGAGGACG 579
|||||||| |||||||||| |||||||| |||| |||||||||||||| |||||||
Sbjct 350 TACCTTATGTAACAGATCAGCATGGAAATATATATTTTCAAGTAAAGGAAAATGAGGATA 409
Query 580 TCATGCAGTCCGTTA---CTTCTGAAAATAATTATGTGCAAGTTATAGTTGGTTTTGATA 636
| |||||| | ||| ||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 410 TAATGCAGACTGTTGTTGCTTCTGATAATAATTATGTGCAAGTGATAGTAGGTTTTGATA 469
Query 637 CGATGGAGATGATCAAGGAAATGGAGCTGATGG-GACTTTCTGATAGTGACTTT-GAAAC 694
||||||||||||||||||| |||||||||| | | | |||| || || ||| | |
Sbjct 470 CGATGGAGATGATCAAGGACATGGAGCTGA-GCAGTCCATCTGGTATTGG-TTTCGGGAT 527
Query 695 TGAAGATGAT-GAA-AGTGGAGAT-GATGACAGT-GAGGAT-ACAGGAGAAGACGAAGAT 749
|||||| || ||| | ||| || | ||| ||| |||||| | | | ||| | |||
Sbjct 528 TGAAGAA-ATCGAAGA-TGGTGAAAG-TGA-AGTCGAGGATGAAA--ACAAGGGG--GAT 579
Query 750 GAGGAGGAATGG-GTTG-CTATTTTAGAGgatgaagatgaagacgatgatg-atgatgat 806
||||| ||| || | | | | | || || ||| || | | || | | || |||
Sbjct 580 GAGGATGAA-GGAGAAGACAAAGAT-GACGAGGAA--TGG-GTTGCTGTTCTA-GAAGAT 633
Query 807 g-atgatgatgaggat-gatgatg-attctgattctgatgaATCGCTGGGAGACTGGGCA 863
| | ||||| |||||| | | ||| || | || ||||||||||| || ||||||||||||
Sbjct 634 GGA-GATGACGAGGATAGTT-ATGTAT-CAGAGTCTGATGAATCACTTGGAGACTGGGCA 690
Query 864 AATTTGGAAACAATGAGG-AGTTGTCATCCCATGTTTTTTGCAAAGAGAATGACTGAGGT 922
|| |||||||| ||| || | ||| ||||| |||| |||||| | ||| ||| | |||||
Sbjct 691 AACTTGGAAACGATGCGGTA-TTGCCATCCTATGTATTTTGCCAGGAGGATGGCCGAGGT 749
Query 923 TGCTTCAAATGATCCTGTTGATTGGATGGATCAGCCGTCTGCTGGCCTTGCTATCCAGGG 982
|||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||||
Sbjct 750 TGCTTCAACTGATCCTGTAAATTGGATGGAGCAGCCGTCCGCTGGCCTTGCTATCCAGGG 809
Query 983 ACTTTTGAGTCATATC-TTAGTGGAAGATTATTCAGATATCCAAAAGA-A-A-CTTGCTG 1038
|| ||||||| | | || ||||||||| | || ||||||||||| | | | || |||
Sbjct 810 GCTCTTGAGTCGTGTTGTT-GTGGAAGATCACTCGGATATCCAAAA-ACATATCT--CTG 865
Query 1039 ATAGCAATTCTACA---ACTAACGGAAACAAGGATGCAGAAAACTTAGTGGACAAGCTTG 1095
| |||| |||||| ||| || |||||||||| | || ||||| || || || |||
Sbjct 866 GTTGCAAATCTACAGGCACTGACAGAAACAAGGAGGGAGGAAACTCAGAAGAGAAATTTG 925
Query 1096 AAGACAATAGTAAGGCAGGTGGTGACGAATCTGAGATAGATTCATCACAGGATGAAAAAG 1155
||| || | || || | || | | ||||||||| || || | ||||||
Sbjct 926 AAGGCATTGGTGAGA-A--TG---A--A-TCTGAGATA--TTG--CA--GCTTGAAAATT 970
Query 1156 CAAGAAATGTGGTGGCGTTTTACAAGCTGGAGATGATAAGAATTCAGCTTATCACAGCAC 1215
| ||||||| | ||| |||||||||||||| |||||||| ||||| ||||| ||||
Sbjct 971 CGAGAAATGCCATATCGTACTACAAGCTGGAGATAATAAGAATCCAGCTCATCACGGCAC 1030
Query 1216 AAGG------GG-A---T-C--A-G----ACTGAAGTTGAG-GTGGAAGATGTCAGAAAA 1256
| || || | | | | | |||||||| || |||||||| ||||| |||
Sbjct 1031 AGGGACATCAGGCAAGATTCTCACGCCTTACTGAAGT-GAAAGTGGAAGACGTCAGGAAA 1089
Query 1257 GCACAACCTGATGCTATTGCTCATGCATCAGCTGAAATCATAAGC-CGTTTAGAAGAATC 1315
| |||||||||||||||||||| |||||||| || ||| | | | ||| ||||||||
Sbjct 1090 GTACAACCTGATGCTATTGCTCGTGCATCAGATGGTATCGTGA-CTCGTCTAGAAGAAGA 1148
Query 1316 TGGTGATAAAATAACTGAAGCACTCAAATCTCTGTGTTGGAGACATAACAGTATTCAAGC 1375
||| |||||| |||||||||| |||||||||||||| ||||||||||| | ||||||||
Sbjct 1149 TGGCGATAAACTAACTGAAGCTCTCAAATCTCTGTGCTGGAGACATAATGGGATTCAAGC 1208
Query 1376 AGAGGAAGTGAAGCTGATTGGGATAGATTCCCTAGGTTTTGACCTCAGGCTTTGCGCAGG 1435
||||||||||||||| || ||||||||||| || ||||| ||||||||| ||||| ||||
Sbjct 1209 AGAGGAAGTGAAGCTCATAGGGATAGATTCACTTGGTTTCGACCTCAGGATTTGCTCAGG 1268
Query 1436 A--GCAAAGATTGAGTCATTGCGATTTGCATTCTCGACAAGGGCAACATCAGAAGAAAAC 1493
| ||||| ||||| |||| || ||||||||||||| |||||||||||||| | |||
Sbjct 1269 AATGCAAA--TTGAGACATTACGGTTTGCATTCTCGATAAGGGCAACATCAGTTCACAAC 1326
Query 1494 GCAGAGGGACAAATAAGAAAACTATTATTC 1523
|| |||||||| | ||| || ||||||||
Sbjct 1327 GCTGAGGGACAGTTGAGAGAATTATTATTC 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70847855700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5