BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49150.1
Length=1934
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897770 jgi|Araly1|897770|Al_scaffold_0005_1736 268 8e-71
Ahg898884 jgi|Araly1|898884|Al_scaffold_0005_2850 230 4e-59
> Ahg897770 jgi|Araly1|897770|Al_scaffold_0005_1736
Length=993
Score = 268 bits (145), Expect = 8e-71
Identities = 399/514 (78%), Gaps = 47/514 (9%)
Strand=Plus/Plus
Query 1348 ATGGACTTGAGACGCACTTTGTCTCTCAGATCCTTATTCAATGCTCGCTGCTACCAACCA 1407
|||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCCTTGAGACGCACTTTATCCCTCAGATCCTTGTTCAATGCTCGCTGCTACCAACCA 60
Query 1408 TCTTGTAGCGGTATCATTCAACGTGATGATGTCCATGAAGAGAAGCCACATTACGGCTCT 1467
|| | |||||||||||||| | |||| |||| |||||| |||||||| |||||||||||
Sbjct 61 TCCTATAGCGGTATCATTCTTCATGATAATGTTCATGAAAAGAAGCCAAATTACGGCTCT 120
Query 1468 TTTCTTCATCAGAGATCCTTCAGCAGTTCGATGATTCTCTCTCAGCAGCATATGATGAGA 1527
|| ||||||||||||||||| ||||| || ||||||||| ||||| | | |||
Sbjct 121 TTGCTTCATCAGAGATCCTTTAGCAGCTC---CATTCTCTCT---CAGCA-A--CTCAGA 171
Query 1528 AGC-C--CTTCACATTTCCCACTATGCTCTCCTTTTGGTGTCTCTA-CC-T-ATCGGC-C 1580
||| | |||||||||| | |||||| |||||||||||||||||| || | ||| || |
Sbjct 172 AGCTCTTCTTCACATTTGTCTCTATGCACTCCTTTTGGTGTCTCTATCCATCATC-GCTC 230
Query 1581 TATGTCGACTTCACATATTTCAGGCTCAGATGAGAGTGGCGATGTGAA-TCATGTTGCTG 1639
|||||||||||| ||| || ||||||||||||| | || |||| || | | ||||| |
Sbjct 231 TATGTCGACTTCTCATGTTCCAGGCTCAGATGATTCTTGCAATGT-AAGTGAAGTTGCAG 289
Query 1640 AAACTCTTACT-GATTTAGTGCA-GCAAGATACAGTCATCGAAGTTGCCGATGCTGCTAT 1697
||||| | | |||| ||| | | || || | | || | | ||| || |
Sbjct 290 GAACTCCGA-TAGATTCGGTG-ATGGAAAAT-GTGGCTTCCCA---G--GAT--TG--GT 337
Query 1698 CGATTCCTCCATCCAA-TTAGATTTTGTTCA-GCAGATAGTTCATAA-TGTGCATTCACT 1754
| | | || ||| ||| || || ||||| | ||| || || | || |||| || |
Sbjct 338 C-A-TACT-CATACAATTTCGACATTGTTAAGGCA-TTAATTGA-AACACTGCACTC-TT 391
Query 1755 -CACAGGCTTAAACTGGTGGGCTTCCATTGTTTTTACCACC-TTTCTAATTCGAGGAGTG 1812
||||||||||||||||||||||||||||||| || ||||| ||| | |||||||||||
Sbjct 392 ACACAGGCTTAAACTGGTGGGCTTCCATTGTTCTTGCCACCCTTT-TGATTCGAGGAGTT 450
Query 1813 ACAATCCCTCTCATGATTGA-ATGCGAAAGATGG 1845
||||| || ||||||||||| | ||||||||||
Sbjct 451 ACAATTCCGCTCATGATTGATAA-CGAAAGATGG 483
> Ahg898884 jgi|Araly1|898884|Al_scaffold_0005_2850
Length=1569
Score = 230 bits (124), Expect = 4e-59
Identities = 226/273 (83%), Gaps = 15/273 (5%)
Strand=Plus/Plus
Query 1084 GGG-CTCCATCAC-AACGATACAATTAAATGTGAGGATGTTGACGGGTGTCTATGCAAAT 1141
||| ||||||||| ||| ||||||||||||||||||| | ||||||||||||||||||||
Sbjct 258 GGGACTCCATCACAAAC-ATACAATTAAATGTGAGGACGCTGACGGGTGTCTATGCAAAT 316
Query 1142 CTTC-ACGTGGCATTCCTAGTTGCCTATCATCAAGTCCGGTGCAGTTTCT-AACGATA-T 1198
|||| | | | ||| ||||||||||||||||||||||||| || |||| || |||| |
Sbjct 317 CTTCAAAG-GAAATTTGTAGTTGCCTATCATCAAGTCCGGTGAAGGTTCTGAA-GATACT 374
Query 1199 GGAAATTTGGTGAAATTTGTGATGACTATGATGAC-ATGGAGAAGCAGATAGAGCTCGTC 1257
|| ||||| ||| ||| | | ||| ||||||| | ||| |||||| | ||||| |||
Sbjct 375 -CAAGTTTGGCGAAGTTTCTTCTTACTTTGATGACGA-GGAAAAGCAGCTGGAGCTAGTC 432
Query 1258 ATGTATTTCCTGGAGACAATGCCGAATCTTGAAGAAATGAAATTGT-TCTACGATACACA 1316
| ||||||||||||||||||||||||||||||| | |||| ||||| | ||| ||||||
Sbjct 433 AAGTATTTCCTGGAGACAATGCCGAATCTTGAACAGATGATATTGTGT-TACAATACACG 491
Query 1317 AATTTATGAAGATGTGATAAG-CAAACTTCAGA 1348
|||| |||||| ||||| ||| ||| ||| |||
Sbjct 492 AATTGATGAAGGTGTGAAAAGTCAA-CTTGAGA 523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72676187460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5