BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49170.1
Length=2606
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323502 jgi|Araly1|323502|fgenesh1_pm.C_scaffold_5001046 3895 0.0
Ahg928093 jgi|Araly1|928093|scaffold_300550.1 230 5e-59
> Ahg323502 jgi|Araly1|323502|fgenesh1_pm.C_scaffold_5001046
Length=3339
Score = 3895 bits (2109), Expect = 0.0
Identities = 2307/2404 (96%), Gaps = 8/2404 (0%)
Strand=Plus/Plus
Query 11 ATGGCGATGATAAGCTTTTCGTTTCCATCTCCCGCCAAACTTCCGATTAAATCTCAACCG 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATGGCGATGATAAGCTTTTCGTTTCCATCTCCCGCCAAACTTCCGATTAAATCTCCACCG 60
Query 71 TCCGTTTCAAATCGGATCAACGTCGCCGACCGTTTGATTCTCCGTCATCTCAATGCCGGA 130
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TCCATTTCAAATCGGATCAACGTCGCTGACCGTTTGATTCTCCGTCATCTCAATGCCGGA 120
Query 131 GATCTTCGTGGAGCGGTTTCAGCTCTTGATCTCATGGCTCGTGATGGGATTCGTCCTATG 190
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 GACCTTCGTGGAGCGGTTTCAGCTCTTGATCTCATGGCTCGTGATGGGATTCGTCCCATG 180
Query 191 GACTCAGTCACTTTCTCTTCACTTCTCAAATCTTGTATCCGAGCACGCGATTTTCGTCTC 250
|| || ||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 181 GATTCTGTCACTTTCTCTTCACTCCTCAAATCTTGTATCCGAGCACGCCATTTTCGTCTC 240
Query 251 GGGAAACTCGTACACGCTCGATTAATCGAGTTTGATATCGAGCCTGATTCGGTTCTCTAC 310
||||||||||| ||||||||||||||||||||||| ||||||||||| ||| || |||||
Sbjct 241 GGGAAACTCGTTCACGCTCGATTAATCGAGTTTGAAATCGAGCCTGACTCGTTTATCTAC 300
Query 311 AATTCGTTGATTAGCTTGTATTCGAAATCTGGAGATTCG-GCGAAAGCTGAA-GATGTGT 368
||||||||||||||||||||||| ||||||||||||| | | ||||||| || |||||||
Sbjct 301 AATTCGTTGATTAGCTTGTATTCAAAATCTGGAGATTTGAG-GAAAGCT-AAGGATGTGT 358
Query 369 TTGAGACTATGAGAAGATTTGGTAAGCGAGATGTTGTTTCGTGGAGTGCGATGATGGCTT 428
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 359 TTGAGACTATGGGAAGATTTGGTATGCGAGATGTTGTTTCGTGGAGTGCGATGATGGCTT 418
Query 429 GTTACGGTAACAACGGAAGAGAATTAGATGCAATTAAGGTTTTTGTTGAGTTTCTGGAGT 488
||| ||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| |
Sbjct 419 GTTTCGGTAACAACGGAAGAGAATTCGATGCGATTAAGCTTTTTGTTGAGTTTCTGGAAT 478
Query 489 TAGGTTTGGTGCCTAATGATTATTGTTACACGGCGGTGATACGAGCTTGTTCGAATTCGG 548
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 479 TGGGTTTGGTGCCTAATGATTATTGTTACACGGCGGTGATACGAGCTTGTTCAAATTCGG 538
Query 549 ATTTTGTTGGAGTTGGGAGAGTGACTTTAGGGTTTTTGATGAAGACTGGGCATTTTGAAT 608
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 539 ATTTTGTTGGAGTTGGGAGAGTGATTTTAGGGTTTTTGATGAAGACTGGGTATTTTGAAT 598
Query 609 CTGATGTGTGTGTGGGTTGTTCTTTGATTGACATGTTTGTGAAAGGAGAGAATAGCTTTG 668
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 599 CTGATGTTTGTGTGGGTTGTTCTTTGATTGACATGTTTGTGAAAGGAGAGAATAGTTTTG 658
Query 669 AGAATGCGTATAAGGTGTTTGATAAAATGTCTGAACTAAATGTTGTTACTTGGACTTTGA 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGAATGCGTATAAGGTGTTTGATAAAATGTCTGAACTAAATGTTGTTACTTGGACTTTGA 718
Query 729 TGATTACTCGGTGTATGCAGATGGGGTTTCCTAGGGAAGCGATTAGGTTTTTCTTGGATA 788
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGATTACTCGGTGTATGCAAATGGGGTTTCCTAGGGAAGCGATTAGGTTTTTCTTGGATA 778
Query 789 TGGTTTTAAGTGGATTTGAATCAGATAAGTTCACACTAAGCTCTGTGTTTTCGGCTTGTG 848
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 779 TGGTTTTAAGCGGATTTGAATCGGATAAGTTCACACTAAGCTCTGTGTTTTCGGCTTGTG 838
Query 849 CTGAGTTGGAGAACTTGTCTTTGGGAAAGCAGTTGCATTCTTGGGCTATTAGATCAGGGC 908
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CTGAGTTGGAGAATTTGTCTTTGGGAAAGCAGTTGCATTCTTGGGCTATTAGATCAGGGC 898
Query 909 TTGTGGATGATGTTGAATGTAGTTTAGTTGATATGTATGCGAAATGTTCTGCGGATGGTT 968
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTGTGGATGATGTTGAGTGTAGTTTAGTTGATATGTATGCGAAATGTTCTGCGGATGGTT 958
Query 969 CGGTAGATGATTGCAGGAAGGTGTTTGATAGAATGGAGGATCATAGTGTTATGTCGTGGA 1028
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 959 CGGTAGATGACTGCAGGAAGGTGTTTGATAGAATGCAGGATCATAGTGTTATGTCGTGGA 1018
Query 1029 CGGCATTGATCACTGGTTATATGAAAAACTGTAATCTCGCTACAGAGGCTATTAATCTCT 1088
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1019 CGGCATTGATCACTGGTTACATGCAAAACTGTAATCTCGCTACAGAGGCTATTAATCTCT 1078
Query 1089 TTAGTGAAATGATAACGCAAGGTCATGTTGAGCCAAATCATTTCACTTTCTCGAGTGCAT 1148
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1079 TTAGTGAAATGATAACCCAAGGTCATGTTGAGCCAAATCATTTCACTTTTTCGAGTGCAT 1138
Query 1149 TCAAGGCGTGTGGAAATCTTTCGGATCCACGGGTAGGTAAACAGGTTCTTGGTCAAGCTT 1208
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1139 TCAAGGCGTGTGGAAATGTTTCGGATCCACGGGTAGGTAAACAGGTTCTTGGTCATGCTT 1198
Query 1209 TCAAAAGAGGGCTTGCTTCGAATAGCAGTGTTGCAAACTCGGTTATCAGCATGTTTGTTA 1268
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TCAAAAGAGGACTTGCTTCGAATAGCAGTGTTGCAAACTCGGTTATCAGCATGTTTGTTA 1258
Query 1269 AATCTGACAGGATGGAAGATGCTCAGAGAGCTTTTGAGTCACTTTCTGAGAAGAACTTGG 1328
||| |||||||||||||||||||| || ||||||||| |||||||||||||| |||||||
Sbjct 1259 AATGTGACAGGATGGAAGATGCTCGGACAGCTTTTGAATCACTTTCTGAGAAAAACTTGG 1318
Query 1329 TTTCGTATAATACATTTCTTGACGGAACATGCAGGAACTTGAATTTTGAGCAAGCATTTA 1388
| || ||||| || |||||||| ||||| |||||||||||| ||||||||||||| |||
Sbjct 1319 TCTCATATAACACCTTTCTTGATGGAACCTGCAGGAACTTGGATTTTGAGCAAGCTTTTG 1378
Query 1389 AGCTTTTAAGTGAGATCACTGAGAGAGAATTAGGTGTTAGCGCTTTCACATTTGCTAGCT 1448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 AGCTTTTAAGTGAGATCACTGAGAGAGAATTAGGTGTTAGCGCTTTCACATTTGCTAGCT 1438
Query 1449 TGTTGAGTGGAGTTGCAAATGTTGGTTCAATAAGAAAAGGCGAGCAAATCCATTCTCAGG 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1439 TGTTGAGTGGAGTTGCAAATGTTGGTTCAATAAGAAAAGGCGAGCAAATCCATTCCCACG 1498
Query 1509 TGGTTAAACTCGGGCTCTCGTGCAATCAACCCGTCTGCAATGCTTTGATCTCTATGTATT 1568
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1499 TGGTTAAACTCGGGCTCTCGTGCAATCAACCTGTCTGCAATGCTTTGATCTCTATGTATT 1558
Query 1569 CCAAATGTGGAAGCATTGACACAGCTTCCCGAGTCTTCAATTTTATGGAAAATCGTAATG 1628
||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||||||||||
Sbjct 1559 CCAAATGCGGAAGCATTGACACAGCTTCCCGAGTCTTCAGTTTAATGGATAATCGTAATG 1618
Query 1629 TCATCTCGTGGACTTCAATGATCACAGGTTTCGCTAAACACGGATTCGCT-ATAAGGGTA 1687
| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1619 TTATCTCGTGGACTTCAATGATCACAGGTTTCGCTAAACACGGATTCGCTGA-AAGGGTC 1677
Query 1688 CTCGAAACATTCAACCAAATGATAG-AAGAAGGGGTGAAGCCAAATGAGGTCACTTATGT 1746
|||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||
Sbjct 1678 CTCGAAACATTCAACCAAATGA-CGAAAGAAGGGGTGAAGCCAAACGAGGTCACTTATGT 1736
Query 1747 TGCAATCTTATCGGCATGCAGCCATGTTGGTTTGGTCTCCGAAGGATGGAGACATTTCAA 1806
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1737 TGCAATCTTATCAGCATGCAGCCATGTTGGTTTGGTCTCTGAAGGATGGAGACATTTCAA 1796
Query 1807 TTCAATGTATGAAGACCACAAGATCAAACCTAAGATGGAACACTATGCTTGTATGGTTGA 1866
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1797 TTCAATGTATGAAGACCACAAGATCAAACCTAAGATGGAGCACTATGCTTGTATGGTTGA 1856
Query 1867 TCTTCTATGTCGAGCCGGGCTTCTCACAGACGCATTTGAGTTCATTAACACAATGCCCTT 1926
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1857 TCTTCTATGTCGAGCCGGGCTTCTCACAGATGCATTTGAGTTCATTAACACAATGCCCTT 1916
Query 1927 CCAAGCCGATGTTTTAGTATGGCGTACGTTTCTTGGAGCTTGCAGAGTTCACAGTAACAC 1986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 CCAAGCCGATGTTTTAGTATGGCGTACGTTTCTTGGAGCTTGCAGAGTTCACAGTAACAC 1976
Query 1987 AGAACTCGGAAAGTTGGCTGCGAGGAAGATCTTAGAACTTGATCCGAATGAGCCTGCAGC 2046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1977 AGAACTCGGAAAGTTGGCTGCGAGGAAGATCTTAGAACTTGATCCGAATGAGCCTGCAGC 2036
Query 2047 TTATATACAGCTCTCAAACATATACGCTTGTGCAGGGAAATGGGAAGAATCTACGGAGAT 2106
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 2037 TTATATACAGCTCTCAAACATATACGCTAGTGCAGGGAAATGGGAAGAATCCACGGAGAT 2096
Query 2107 GAGGAGGAAGATGAAAGAGAGAAACTTGGTTAAAGAAGGAGGTTGCAGTTGGATAGAAGT 2166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2097 GAGGAGGAAGATGAAAGAGAGAAACTTGGTTAAAGAAGGAGGTTGCAGTTGGATAGAAGT 2156
Query 2167 GGGAGATAAAATTCATAAGTTCTACGTAGGTGATACAGCTCACCCGAATGCTCACCAAAT 2226
||||||||| ||||||||||||| ||||| |||||| ||||||||||||||||||||||
Sbjct 2157 GGGAGATAAGGTTCATAAGTTCTATGTAGGCGATACATCTCACCCGAATGCTCACCAAAT 2216
Query 2227 ATATGATGAATTGGATCGGTTAATTACAGAAATAAAACGCTGCGGATATGTTCCTGATAC 2286
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2217 ATATGATGAATTGGACCGGTTAATTACAGAAATAAAACGCTGCGGATATGTTCCTGATAC 2276
Query 2287 GGATCTTGTTCTTCACAAGCTAGAGGAGGAGAATGATGAGGCGGAGAAGGAGAGGTTACT 2346
||||||||||||||||||||||||||| ||| |||||||||| ||||||||| ||||||
Sbjct 2277 GGATCTTGTTCTTCACAAGCTAGAGGAAGAGGATGATGAGGCAAAGAAGGAGATGTTACT 2336
Query 2347 ATATCAGCACAGCGAGAAAATTGCGGTTGCGTTTGGGCTTATAAGCACGTCGAAATCTAG 2406
||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 2337 GTATCAGCACAGTGAGAAAATTGCAGTTGCGTTTGGGCTTATAAGCACGGCGAAATCTAG 2396
Query 2407 ACCG 2410
||||
Sbjct 2397 ACCG 2400
> Ahg928093 jgi|Araly1|928093|scaffold_300550.1
Length=700
Score = 230 bits (124), Expect = 5e-59
Identities = 140/148 (95%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 144 CGGTTTCAGCTCTTGATCTCATGGCTCGTGATGGGATTCGTCCTATGGACTCAGTCACTT 203
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 CGGTTTCAGCTCTTGATCTCATGGCTCGTGATGGGATTCGTCCCATGGACTCAGTCACTT 60
Query 204 TCTCTTCACTTCTCAAATCTTGTATCCGAGCACGCGATTTTCGTCTCGGGAAACTCGTAC 263
|||||||||| |||||||||||||||| ||||||||||||| | ||||| |||||||| |
Sbjct 61 TCTCTTCACTCCTCAAATCTTGTATCCAAGCACGCGATTTTTGGCTCGGAAAACTCGTTC 120
Query 264 ACGCTCGATTAATCGAGTTTGATATCGA 291
|||||||||||||||||||||| |||||
Sbjct 121 ACGCTCGATTAATCGAGTTTGAGATCGA 148
Score = 135 bits (73), Expect = 1e-30
Identities = 81/85 (95%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 589 GAAGACTGGGCATTTTGAATCTGATGTGTGTGTGGGTTGTTCTTTGATTGACATGTTTGT 648
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 233 GAAGACTGGGTATTTTGAATCTGATGTCTGTGTGGGTTGTTCTTTGATTGACATGTTTGT 292
Query 649 GAAAGGAGAGAATAGCTTTGAGAAT 673
|||||| |||||||| |||||||||
Sbjct 293 GAAAGGGGAGAATAGTTTTGAGAAT 317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98272832100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5