BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G49180.1 Length=1508 Score E Sequences producing significant alignments: (Bits) Value Ahg485276 jgi|Araly1|485276|fgenesh2_kg.5__1268__AT3G49180.1 2047 0.0 Ahg485277 jgi|Araly1|485277|fgenesh2_kg.5__1269__AT3G49190.1 126 4e-28 > Ahg485276 jgi|Araly1|485276|fgenesh2_kg.5__1268__AT3G49180.1 Length=1429 Score = 2047 bits (1108), Expect = 0.0 Identities = 1335/1442 (93%), Gaps = 26/1442 (2%) Strand=Plus/Plus Query 1 TAGATATCACAAAACCCAGAC-TTGGAATCAGTTTCTCTTTACTTCCCTCTTTCTCTGAG 59 ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| || Sbjct 1 TAGATATCACAAAACCCAGACTTTGGAATCAGTTTCTCTTTTTTTCCCTCTTTCTCTTAG 60 Query 60 CTATGGAGATTACTGTAATCGCTTCTTCCTCAATCGATGAAGGAATTGGAAGTTGGGATC 119 | ||||||||| |||| |||||||| || ||||||||||||||||||||||| ||||||| Sbjct 61 CGATGGAGATTTCTGTTATCGCTTCATCGTCAATCGATGAAGGAATTGGAAGCTGGGATC 120 Query 120 TCAAAACCGGGACA-GAGCAGCTTCAATTCAAGCCGTGTGCTTCTCCGGCGCATGGTCTC 178 |||||||||||| | |||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 121 TCAAAACCGGGA-ATGAGCAGCTTCGTTTCAAGCAGTGTGCTTCTCCGGCGCATGGTCTC 179 Query 179 ACCGCCGTCGGCGAAAAATTTCTCGCCTCCTCTCAGCTCTCGGCGAGAA---A-TACTTC 234 |||||||||||||| ||||| |||||||||||||||||| || |||| | | |||| Sbjct 180 ACCGCCGTCGGCGAGAAATTCCTCGCCTCCTCTCAGCTC-CGTAAAGAATCTACTTCTTC 238 Query 235 TGGCTCGATTTTTTACTGGTCTTGGACTAAGCCTCAAGCTGAAGTGAAGAGCTACCCAGT 294 |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| Sbjct 239 TGGCTCGATTTTTTACTGGTCTTGGACTAAGCCTCAAGTTGAAGTGAGGAGCTTTCCAGT 298 Query 295 GGAACCAATAAAGGCTCTTGCAGCAAACAATGAAGGAACTTACTTAGTTGGTGGTGGAAT 354 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 299 GGAACCAATAAAGGCTCTTGCAGCAAACAATGAAGGAACTTACTTAGTTGGTGGTGG-AT 357 Query 355 -CTCTGGAGATATTTACCTTTGGGAGGTTGCGACTGGGAAGTTGCTTAAGAAGTGGCATG 413 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 CCTCCGGAGATATTTACCTTTGGGAGGTTGCGACTGGGAAGTTGCTTAAGAAGTGGCATG 417 Query 414 GTCATTATCGTTCAGTAACATGTTTGGTGTTCTCTGGAGATGATTCTTTGTTGGTTTCTG 473 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 418 GTCATTATCGTTCAGTGACATGTTTGGTGTTCTCTGGAGATGATTCTTTGTTGGTTTCAG 477 Query 474 GATCTCAAGATGGGTCTATTAGAGTTTGGTCTCTTATAAGGCTATTTGATGATTTCCAGA 533 ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 478 GATCTCAAGATGGATCTGTTAGAGTTTGGTCTCTTATAAGGCTATTTGATGATTTCCAGA 537 Query 534 GGCAGCAAGGGAACACTCTTTATGAACACAATTTTAATGAGCATACAATGTCTGTAACTG 593 ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || | Sbjct 538 GGCAGCAAGGGAAAACTCTTTATGAACATAATTTTAATGAGCATACAATGTCTGTGACAG 597 Query 594 ATATTGTTATAGACTATGGAGGCTGCAATGCTGTGATAATTTCCT-CTTCAGAAGATCGG 652 | |||||||| || |||||||||||||||||| |||||||||| | |||| ||||||||| Sbjct 598 ACATTGTTATTGATTATGGAGGCTGCAATGCTATGATAATTTC-TGCTTCGGAAGATCGG 656 Query 653 ACTTGCAAGGTTTGGAGCTTGTCAAGAGGGAAATTGTTGAAAAATATCATTTTTCCTTCA 712 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 ACTTGCAAGGTTTGGAGCTTGTCAAGAGGGAAATTGTTGAAAAATATCATTTTTCCTTCA 716 Query 713 GTCATCAATGCACTCGCATTGGACCCTGGAGGGTGTGTGTTCTATGCTGGTGCCAGAGAC 772 | ||||||||||||||| ||||||||||| |||| ||||||||||||||||| ||||| Sbjct 717 GCCATCAATGCACTCGCGTTGGACCCTGGCGGGTATGTGTTCTATGCTGGTGGTAGAGAT 776 Query 773 AGCAAAATCTATATCGGTGCCATTAATGCCACAAGTGAATACGGGACACAAGTTCTTGGT 832 ||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||| Sbjct 777 GGCAAAATTTATATCGGTGCCATTAATGCCACGAGTGAATATGGGACACAAGTTCTAGGT 836 Query 833 TCAGTATCTGAA-AAAGGCAAAGCTATTACTTGCTTAGCATATTGTGCAGACGGAAACCT 891 |||||||| ||| |||| ||||||| ||||||||||||||||||| |||| |||||||| Sbjct 837 TCAGTATCCGAACAAAG-CAAAGCTGTTACTTGCTTAGCATATTGCACAGAGGGAAACCT 895 Query 892 TTTGATATCTGGATCAGAAGATGGTGTGGTTTGTGTTTGGGATCCCAAATCACTTCGCCA 951 ||| || |||||||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 896 TTTAATTTCTGGATCAGAAGAAGGTGTGGTTTGTGTTTGGGATCCCAAATCACGTCGCCC 955 Query 952 TGTTCGTACTCTCATCCATGCAAAAGGTTCTAGAAAAGGTCCT---GTGAACAATATTCA 1008 ||||||||||||| || || |||||| | ||| |||||| |||||||||||||| Sbjct 956 TGTTCGTACTCTCGGCCGTGGAAAAGG----A-AAA-GGTCCTCCTGTGAACAATATTCA 1009 Query 1009 AATTGTTAGAAAAACGATTGTTGCTAATTCCAACAAAACCCAAGT-TTCCTGGAAAAGTC 1067 ||||||||||||||||||||||| ||||||||||||||| ||| | |||||||||||| | Sbjct 1010 AATTGTTAGAAAAACGATTGTTGATAATTCCAACAAAACACAA-TCTTCCTGGAAAAGAC 1068 Query 1068 GTGGGGCTTTAATCCCACCGCCTTTGGAAAAATATGAAAGACCAGTAGAAGATACTATGG 1127 ||||| |||| || ||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 1069 GTGGGTCTTTGATGCCACCGCCTTTGGAAAAATATGAAAGATCAGGAGAAGATACTATGG 1128 Query 1128 ATGGTATCGTTACGGTTGATCCGCCGCCATTTTCTGATGTTCCTGTTTACTCTTCTTTCC 1187 ||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||| Sbjct 1129 ATGGTATCGTTACCGTTGATCCACCCCCATTTTCTGATGTTCCTGTTTACTCTTCTTTCC 1188 Query 1188 TCAGTGCTGACCTTATTGACGAGCAAGTTAAAGAACTTCAGCAACAAGGCTCTGCAGCAA 1247 |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1189 TCAGCGCTGACCTTATTGACGAGCAAGTTAGAGAACTTCAGCAACAAGGCTCTGCAGCAA 1248 Query 1248 CAGAGATGGAAATGGAAAGACTGAAACTTGAATACAAAAGATCTTTACAGATGAATGAAC 1307 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1249 CAGAGATCGAAATGGAAAGACTGAAACTTGAATACAAAAGATCTTTACAGATGAATGATC 1308 Query 1308 AATGGCAGAAGAACTATGAGAATTTGCTTCAAGTGGTTATGGAAGAAGAACAAATCGGTG 1367 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1309 AATGGCAGAAGAACTATGAGAATTTGCTTCAGGTGGTTATGGAAGAAGAACAAATCGGTG 1368 Query 1368 GTACCAATTGAAAGCTTTTTATTGTTGTTTCTACACATTTTTGGAATTACATTAAGAGAT 1427 || |||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| Sbjct 1369 GTTCCAATTGAAAGCTTTT-ATTGTTGTTTCTACACATTTTTGGAATTATATTGAGAGAT 1427 Query 1428 AT 1429 || Sbjct 1428 AT 1429 > Ahg485277 jgi|Araly1|485277|fgenesh2_kg.5__1269__AT3G49190.1 Length=1675 Score = 126 bits (68), Expect = 4e-28 Identities = 77/81 (95%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 1349 GAAGAAGAACAAATCGGTGGTACCAATTGAAAGCTTTTTATTGTTGTTTCTACACATTTT 1408 ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct 1675 GAAGAAGAACAAATCGGTGGTTCCAATTGAAAGC-TTTTATTGTTGTTTCTACACATTTT 1617 Query 1409 TGGAATTACATTAAGAGATAT 1429 |||||||| ||| |||||||| Sbjct 1616 TGGAATTATATTGAGAGATAT 1596 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56449743090 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5