BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49180.1
Length=1508
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485276 jgi|Araly1|485276|fgenesh2_kg.5__1268__AT3G49180.1 2047 0.0
Ahg485277 jgi|Araly1|485277|fgenesh2_kg.5__1269__AT3G49190.1 126 4e-28
> Ahg485276 jgi|Araly1|485276|fgenesh2_kg.5__1268__AT3G49180.1
Length=1429
Score = 2047 bits (1108), Expect = 0.0
Identities = 1335/1442 (93%), Gaps = 26/1442 (2%)
Strand=Plus/Plus
Query 1 TAGATATCACAAAACCCAGAC-TTGGAATCAGTTTCTCTTTACTTCCCTCTTTCTCTGAG 59
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||
Sbjct 1 TAGATATCACAAAACCCAGACTTTGGAATCAGTTTCTCTTTTTTTCCCTCTTTCTCTTAG 60
Query 60 CTATGGAGATTACTGTAATCGCTTCTTCCTCAATCGATGAAGGAATTGGAAGTTGGGATC 119
| ||||||||| |||| |||||||| || ||||||||||||||||||||||| |||||||
Sbjct 61 CGATGGAGATTTCTGTTATCGCTTCATCGTCAATCGATGAAGGAATTGGAAGCTGGGATC 120
Query 120 TCAAAACCGGGACA-GAGCAGCTTCAATTCAAGCCGTGTGCTTCTCCGGCGCATGGTCTC 178
|||||||||||| | |||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 121 TCAAAACCGGGA-ATGAGCAGCTTCGTTTCAAGCAGTGTGCTTCTCCGGCGCATGGTCTC 179
Query 179 ACCGCCGTCGGCGAAAAATTTCTCGCCTCCTCTCAGCTCTCGGCGAGAA---A-TACTTC 234
|||||||||||||| ||||| |||||||||||||||||| || |||| | | ||||
Sbjct 180 ACCGCCGTCGGCGAGAAATTCCTCGCCTCCTCTCAGCTC-CGTAAAGAATCTACTTCTTC 238
Query 235 TGGCTCGATTTTTTACTGGTCTTGGACTAAGCCTCAAGCTGAAGTGAAGAGCTACCCAGT 294
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 239 TGGCTCGATTTTTTACTGGTCTTGGACTAAGCCTCAAGTTGAAGTGAGGAGCTTTCCAGT 298
Query 295 GGAACCAATAAAGGCTCTTGCAGCAAACAATGAAGGAACTTACTTAGTTGGTGGTGGAAT 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 299 GGAACCAATAAAGGCTCTTGCAGCAAACAATGAAGGAACTTACTTAGTTGGTGGTGG-AT 357
Query 355 -CTCTGGAGATATTTACCTTTGGGAGGTTGCGACTGGGAAGTTGCTTAAGAAGTGGCATG 413
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CCTCCGGAGATATTTACCTTTGGGAGGTTGCGACTGGGAAGTTGCTTAAGAAGTGGCATG 417
Query 414 GTCATTATCGTTCAGTAACATGTTTGGTGTTCTCTGGAGATGATTCTTTGTTGGTTTCTG 473
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 418 GTCATTATCGTTCAGTGACATGTTTGGTGTTCTCTGGAGATGATTCTTTGTTGGTTTCAG 477
Query 474 GATCTCAAGATGGGTCTATTAGAGTTTGGTCTCTTATAAGGCTATTTGATGATTTCCAGA 533
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GATCTCAAGATGGATCTGTTAGAGTTTGGTCTCTTATAAGGCTATTTGATGATTTCCAGA 537
Query 534 GGCAGCAAGGGAACACTCTTTATGAACACAATTTTAATGAGCATACAATGTCTGTAACTG 593
||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 538 GGCAGCAAGGGAAAACTCTTTATGAACATAATTTTAATGAGCATACAATGTCTGTGACAG 597
Query 594 ATATTGTTATAGACTATGGAGGCTGCAATGCTGTGATAATTTCCT-CTTCAGAAGATCGG 652
| |||||||| || |||||||||||||||||| |||||||||| | |||| |||||||||
Sbjct 598 ACATTGTTATTGATTATGGAGGCTGCAATGCTATGATAATTTC-TGCTTCGGAAGATCGG 656
Query 653 ACTTGCAAGGTTTGGAGCTTGTCAAGAGGGAAATTGTTGAAAAATATCATTTTTCCTTCA 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ACTTGCAAGGTTTGGAGCTTGTCAAGAGGGAAATTGTTGAAAAATATCATTTTTCCTTCA 716
Query 713 GTCATCAATGCACTCGCATTGGACCCTGGAGGGTGTGTGTTCTATGCTGGTGCCAGAGAC 772
| ||||||||||||||| ||||||||||| |||| ||||||||||||||||| |||||
Sbjct 717 GCCATCAATGCACTCGCGTTGGACCCTGGCGGGTATGTGTTCTATGCTGGTGGTAGAGAT 776
Query 773 AGCAAAATCTATATCGGTGCCATTAATGCCACAAGTGAATACGGGACACAAGTTCTTGGT 832
||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 777 GGCAAAATTTATATCGGTGCCATTAATGCCACGAGTGAATATGGGACACAAGTTCTAGGT 836
Query 833 TCAGTATCTGAA-AAAGGCAAAGCTATTACTTGCTTAGCATATTGTGCAGACGGAAACCT 891
|||||||| ||| |||| ||||||| ||||||||||||||||||| |||| ||||||||
Sbjct 837 TCAGTATCCGAACAAAG-CAAAGCTGTTACTTGCTTAGCATATTGCACAGAGGGAAACCT 895
Query 892 TTTGATATCTGGATCAGAAGATGGTGTGGTTTGTGTTTGGGATCCCAAATCACTTCGCCA 951
||| || |||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 896 TTTAATTTCTGGATCAGAAGAAGGTGTGGTTTGTGTTTGGGATCCCAAATCACGTCGCCC 955
Query 952 TGTTCGTACTCTCATCCATGCAAAAGGTTCTAGAAAAGGTCCT---GTGAACAATATTCA 1008
||||||||||||| || || |||||| | ||| |||||| ||||||||||||||
Sbjct 956 TGTTCGTACTCTCGGCCGTGGAAAAGG----A-AAA-GGTCCTCCTGTGAACAATATTCA 1009
Query 1009 AATTGTTAGAAAAACGATTGTTGCTAATTCCAACAAAACCCAAGT-TTCCTGGAAAAGTC 1067
||||||||||||||||||||||| ||||||||||||||| ||| | |||||||||||| |
Sbjct 1010 AATTGTTAGAAAAACGATTGTTGATAATTCCAACAAAACACAA-TCTTCCTGGAAAAGAC 1068
Query 1068 GTGGGGCTTTAATCCCACCGCCTTTGGAAAAATATGAAAGACCAGTAGAAGATACTATGG 1127
||||| |||| || ||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1069 GTGGGTCTTTGATGCCACCGCCTTTGGAAAAATATGAAAGATCAGGAGAAGATACTATGG 1128
Query 1128 ATGGTATCGTTACGGTTGATCCGCCGCCATTTTCTGATGTTCCTGTTTACTCTTCTTTCC 1187
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1129 ATGGTATCGTTACCGTTGATCCACCCCCATTTTCTGATGTTCCTGTTTACTCTTCTTTCC 1188
Query 1188 TCAGTGCTGACCTTATTGACGAGCAAGTTAAAGAACTTCAGCAACAAGGCTCTGCAGCAA 1247
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1189 TCAGCGCTGACCTTATTGACGAGCAAGTTAGAGAACTTCAGCAACAAGGCTCTGCAGCAA 1248
Query 1248 CAGAGATGGAAATGGAAAGACTGAAACTTGAATACAAAAGATCTTTACAGATGAATGAAC 1307
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1249 CAGAGATCGAAATGGAAAGACTGAAACTTGAATACAAAAGATCTTTACAGATGAATGATC 1308
Query 1308 AATGGCAGAAGAACTATGAGAATTTGCTTCAAGTGGTTATGGAAGAAGAACAAATCGGTG 1367
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1309 AATGGCAGAAGAACTATGAGAATTTGCTTCAGGTGGTTATGGAAGAAGAACAAATCGGTG 1368
Query 1368 GTACCAATTGAAAGCTTTTTATTGTTGTTTCTACACATTTTTGGAATTACATTAAGAGAT 1427
|| |||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1369 GTTCCAATTGAAAGCTTTT-ATTGTTGTTTCTACACATTTTTGGAATTATATTGAGAGAT 1427
Query 1428 AT 1429
||
Sbjct 1428 AT 1429
> Ahg485277 jgi|Araly1|485277|fgenesh2_kg.5__1269__AT3G49190.1
Length=1675
Score = 126 bits (68), Expect = 4e-28
Identities = 77/81 (95%), Gaps = 1/81 (1%)
Strand=Plus/Minus
Query 1349 GAAGAAGAACAAATCGGTGGTACCAATTGAAAGCTTTTTATTGTTGTTTCTACACATTTT 1408
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1675 GAAGAAGAACAAATCGGTGGTTCCAATTGAAAGC-TTTTATTGTTGTTTCTACACATTTT 1617
Query 1409 TGGAATTACATTAAGAGATAT 1429
|||||||| ||| ||||||||
Sbjct 1616 TGGAATTATATTGAGAGATAT 1596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56449743090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5