BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49190.1
Length=1727
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485277 jgi|Araly1|485277|fgenesh2_kg.5__1269__AT3G49190.1 2268 0.0
Ahg937708 jgi|Araly1|937708|scaffold_501899.1 1042 0.0
Ahg485279 jgi|Araly1|485279|fgenesh2_kg.5__1271__AT3G49210.1 896 0.0
Ahg485276 jgi|Araly1|485276|fgenesh2_kg.5__1268__AT3G49180.1 126 5e-28
> Ahg485277 jgi|Araly1|485277|fgenesh2_kg.5__1269__AT3G49190.1
Length=1675
Score = 2268 bits (1228), Expect = 0.0
Identities = 1483/1606 (92%), Gaps = 18/1606 (1%)
Strand=Plus/Plus
Query 2 TTGAACAAAAAATAATGGAGATTGAGACACGACCACACATATCAGG-GGACGAGAAGGAA 60
|||||||||||| ||||||||| |||| | || ||||||||| || | |||||||||||
Sbjct 1 TTGAACAAAAAAGCATGGAGATTAAGACGCAACGACACATATC-GGAGAACGAGAAGGAA 59
Query 61 GAGGAGCAACCACTTAGCCCGGCGGCGCGTCTGTTTCACGCGCCAGAGTTTAACTGCAAC 120
|||||||||||||||||||| ||||| ||||| |||||| |||| |||||||||||||||
Sbjct 60 GAGGAGCAACCACTTAGCCCAGCGGCCCGTCTTTTTCACTCGCCGGAGTTTAACTGCAAC 119
Query 121 ATCATATCAGTGATTGGTTTTAAGAGTAAGCTCGATCCATGTGTGTTTATCAGAGGCTTT 180
|| ||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 120 ATTATATCGGTGATTGGTTTAAAGAGTAAGCTCGATCCATGTGTGATTATCAGAGGCTTT 179
Query 181 AAGGAAAGTTTTATCAGGCATCCTCGTTTCTCAAGTAAATTGGTGACCGATGAGAATGGA 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAGGAAACTTTTATCAGGCATCCTCGTTTCTCAAGTAAATTGGTGACCGATGAGAATGGA 239
Query 241 CAAAACCAAAGATGGGTTCGGACAAACGTGGTCGTCGAGGATCACTTCATCGTACCCAAA 300
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 240 CAAAACCAAAGATGGGTTCGGACAAACGTGGTCGTCGAGGATCACGTCATTGTACCGGAA 299
Query 301 ATCAAACCCCAAAACATAGAGAACTCAAACGCATTTCTCGAAGATTACGTTTCTGACCTC 360
||||||| ||||||||||||||| || || | |||||||||||||||||||||||||||
Sbjct 300 ATCAAACTTCAAAACATAGAGAACACAGACTCGTTTCTCGAAGATTACGTTTCTGACCTC 359
Query 361 ATGAAGATCCCGTTGGACACCTCGAGGCCGTTATGGGAGCTTCACCTACTCGACTTGAAA 420
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 360 ATGAAGATCCCGTTGGACATCTCGAGGCCATTATGGGAGCTTCACCTACTCGACTTGAAA 419
Query 421 ACCTCAGACGCTGAAAACGTCGCCGTTTTAAAGATCCATCACTCGGTTGGTGATGGCATG 480
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 420 ACCTCAGACGCTGAAAACGTCGCAGTTTTAAAGATCCATCACTCGGTTGGCGATGGTATG 479
Query 481 TCAATCATGTCTCTTGTCCTCGCTTGTATGCGTAAAACATCAAATCCCGATGAGCTTCCT 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 480 TCAATCATGTCTCTTGTCCTCGCTTGTATGCGTAAAACATCAAATCCGGATGAGCTTCCT 539
Query 541 AGTCTTCCGTACCAGTACCGGTCGTCATCAAGGTCATCCCTGTTGACAACCGGTTCAAGA 600
||||| |||||||||||||||||||||||| ||||||||||||| |||||||| ||||||
Sbjct 540 AGTCTCCCGTACCAGTACCGGTCGTCATCAGGGTCATCCCTGTTAACAACCGGCTCAAGA 599
Query 601 AGTGATTCCCGGTTGTTGTGGTTGGTTAAGGTTATTTGGACGGCGGTTATCTTGGGTTTA 660
|||||||||||||| |||||| ||||||||||| | |||||||||||||| |||||||||
Sbjct 600 AGTGATTCCCGGTTATTGTGGCTGGTTAAGGTTCTCTGGACGGCGGTTATATTGGGTTTA 659
Query 661 AACACGGTTTGTGATGCTTTGGAGTTTATTGTTACGACATTGTTCGTTAAGGACACCGAG 720
|||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 660 AACACGATTTGTGATACTTTGGAGTTTATTGTTACGACATTGTTTGTTAAGGACACCGAG 719
Query 721 ACACCCATCAAAGGTGATTTCCTGTCAACGAAGAGTAAACAGCTGCGTTTGGTTCATCGT 780
|| ||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 720 ACGCCCATCAAAGGTGATTTCCGGTCAACGAAGAGTAAACGGTTGCGTTTGGTTCATCGT 779
Query 781 ACTGTGAGCCTTGACGATATCAAGCTAACCAAGAACGCAATGAACATGACTA-TCAACGA 839
|| || |||||||||||||| ||||||| ||||||||| ||||||||||| | |||||||
Sbjct 780 ACCGTAAGCCTTGACGATATTAAGCTAATCAAGAACGCCATGAACATGAC-AGTCAACGA 838
Query 840 TGTTGTACTTGGAGTAACCCAAGCTGGTCTCTCGCGATACCTTGCGAGAAGATACGGAGA 899
||||||||||||||| ||||||||| ||||||||| |||||||| |||||||||||||||
Sbjct 839 TGTTGTACTTGGAGTGACCCAAGCTAGTCTCTCGCAATACCTTGAGAGAAGATACGGAGA 898
Query 900 A-GAAGAAACTAAAAATAGGAAGCa-aaaaaaGCTGCCTAAGAGAATAAGGCTAAGATCA 957
| || |||||||| | ||||| | |||||| |||||||| ||||||||||||||||||
Sbjct 899 AAGA-GAAACTAAGA---GGAAG-AGAAAAAATCTGCCTAAAAGAATAAGGCTAAGATCA 953
Query 958 GCTCTGCTTGTAAACTTACGACCAACAACTGGAATCCAGGATCTAGCAGATATGATGGAG 1017
|||||||||||||||||| |||| |||||||||||||||||| |||| ||||||||||||
Sbjct 954 GCTCTGCTTGTAAACTTAAGACCCACAACTGGAATCCAGGATATAGCCGATATGATGGAG 1013
Query 1018 AAAGGGTCTAAATGTAGGTGGGGAAATTGGTTCGGCTATGTAGTATTTCCGTTTTCTATC 1077
|| ||||| |||||||||||||||||||||||||| ||| ||||||| ||||||||||||
Sbjct 1014 AACGGGTCCAAATGTAGGTGGGGAAATTGGTTCGGGTATATAGTATTCCCGTTTTCTATC 1073
Query 1078 GCATTACGCGATGACCCATTGGAACATCTTGAAATAGCTCAGAAGACCATCAGTCGAAAG 1137
||||||||||||||||||||||||||||| ||| ||| ||||||| ||||| ||| |||
Sbjct 1074 GCATTACGCGATGACCCATTGGAACATCTCAAAAGAGCCCAGAAGATCATCACTCGTAAG 1133
Query 1138 AAGAATTCATACGGCGCAATGCTAACATACATATTCTGTAGAATCATTGTCAAATTGCTT 1197
||||| |||| ||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1134 AAGAACTCATTCGGGGCAATGCTAACATACATTTTCTGTAGAATCATTGTCAAATTCCTT 1193
Query 1198 GGAAT-CAAGGTGGCGGCTAGTATAATAAACAGAATGGTGTCAAACACAACGATGACGTT 1256
||||| || | ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1194 GGAATTCA-GTTGGCGGCTACTATAATAAACAGAATGGTGTCAAACACAACGATGACGTT 1252
Query 1257 TTCGAACATGGTTGGTCCCGTTGAAGAAGTTAGCTTCTATGGACATCCCATCACTTACTT 1316
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1253 TTCGAACATGGTTGGTCCCGTTGAACAAGTTAGCTTCTATGGACATCCCATCACTTACTT 1312
Query 1317 TGCCTCAAGTGCTTATGGCCATCCCCATGCGTTGACGATACATTGTCAAAGTTATATGAA 1376
||||||||||| |||||| ||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1313 TGCCTCAAGTGGTTATGGTCATCCCCATGCATTGACGATAAATTGTCAAAGTTATATGAA 1372
Query 1377 TAAGATGACAATTACACTAATCGTAGATCCAACGGTGATAAGTGATCCTCATCGGCTTTG 1436
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1373 TAAGATGACAATAACACTAATCGTAGATTCAACGGTGATAAGTGATCCTCATCGGCTCTG 1432
Query 1437 TGACGACTGGGAAGAATCTCTCCGAAGCATTAAAGCCGCTGTCACA-AAAAGAGAGTCTC 1495
|||||| ||| | |||||||||||||||||||||||||||||| || ||||||| |||||
Sbjct 1433 TGACGATTGGCAGGAATCTCTCCGAAGCATTAAAGCCGCTGTC-CAGAAAAGAGGGTCTC 1491
Query 1496 TCCGTTTGTGGGATTATCTCAGGATTCTCCA-CAATAGAGTGGCTTGGCTACTTTACCAA 1554
|| |||||||||||||||||||| ||||| | ||||||| ||||||||||||||||||||
Sbjct 1492 TCGGTTTGTGGGATTATCTCAGGCTTCTC-AGCAATAGAATGGCTTGGCTACTTTACCAA 1550
Query 1555 ATCGCTGGGCTACTTTACAGAATGCTATGATACCTAAATTTGGGAT 1600
|| ||||| ||||| |||| |||||| |||| | ||||||||||||
Sbjct 1551 ATGGCTGGACTACTATACAAAATGCTTTGATGC-TAAATTTGGGAT 1595
Score = 126 bits (68), Expect = 5e-28
Identities = 77/81 (95%), Gaps = 1/81 (1%)
Strand=Plus/Plus
Query 1647 ATATCTCTTAATGTAATTCCAAAAATGTGTAGAAACAACAATAAAAAGCTTTCAATTGGT 1706
|||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1596 ATATCTCTCAATATAATTCCAAAAATGTGTAGAAACAACAATAAAA-GCTTTCAATTGGA 1654
Query 1707 ACCACCGATTTGTTCTTCTTC 1727
|||||||||||||||||||||
Sbjct 1655 ACCACCGATTTGTTCTTCTTC 1675
> Ahg937708 jgi|Araly1|937708|scaffold_501899.1
Length=1556
Score = 1042 bits (564), Expect = 0.0
Identities = 1178/1465 (80%), Gaps = 79/1465 (5%)
Strand=Plus/Plus
Query 53 AGAAGGAAGAGGAGCAACCACTTAGCCCGGCGGCGCGTCTGTTTCACGCGCCAGAGTTTA 112
|||| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 83 AGAA-GAGGAGGAGCAACCACTTAGCCCGGCGGCGCGTCTGTTCCACGCGCCGGAGTTTA 141
Query 113 ACTGCAACATCATATCAGTGATTGGTTTTAAGAGTAAGCTCGATCCATG-TGTGTTTATC 171
||||| ||||||| || ||| ||||||| |||| ||| || | ||| | |||| |||||
Sbjct 142 ACTGCTACATCATTTCGGTGGTTGGTTTAAAGAACAAGATCCAACCA-GATGTGATTATC 200
Query 172 AGA-GGCTTTAAGGAAAGTTTTATCAGGCATCCTCGTTTCTCAAGTAAATTGGTGACCGA 230
|| || ||||| ||| ||| || || |||||||||||||| ||||||||||||| | |
Sbjct 201 -GAAGGAATTAAGCAAACTTTGATTAGACATCCTCGTTTCTCCAGTAAATTGGTGAACAA 259
Query 231 TGAGAATGGACAAAACCAAAGATGGGTTCGGACAAACGTGGTCGTCGAGGATCACTTCAT 290
| |||| ||| | || ||| |||||||||||||||||||| |||||||||||| ||||
Sbjct 260 T-AGAAAGGA-ACAA--AAA--TGGGTTCGGACAAACGTGGTGGTCGAGGATCACGTCAT 313
Query 291 CGTACCCAAAATC-AAACCCCAAAA-CATAGAGAACTCAAACGCA-----TTT-CTCGA- 341
| | ||||||||| |||| |||| |||| ||||| |||||||| ||| || ||
Sbjct 314 CATTCCCAAAATCGAAACG--AAAATCATAAAGAACGCAAACGCAGACGCTTTTCTTGAG 371
Query 342 AGATTACGTTTCTGACCTCA-TGAAGATCCCGTTGGACACCTCGAGGCCGTTATGGGA-G 399
|| |||||| || ||||||| | | ||||||||| |||||||| | |||||||||||| |
Sbjct 372 AG-TTACGTCTCCGACCTCACT-ACGATCCCGTTAGACACCTCCAAGCCGTTATGGGAAG 429
Query 400 CTTCACCTACTCGACTTGAAAACCTCAGACGCTGAAAACGTCGCCGTTTTAAAGATCCAT 459
|||| ||||||||||||||||||| |||||||||||||||| ||||||| | |||||
Sbjct 430 -TTCATTTACTCGACTTGAAAACCTCCGACGCTGAAAACGTCGTGGTTTTAAGGGTCCAT 488
Query 460 CACTCGGTT-GGTGATGGCATGTCAATCATGTCTCTTGTCCTCGCTTGTATGCGTAAAAC 518
|||||| || ||||| || ||||| || |||||||| |||||||| |||| ||||||||
Sbjct 489 CACTCG-TTAGGTGACGGTATGTCTATGATGTCTCTAGTCCTCGCGTGTACCCGTAAAAC 547
Query 519 ATCAAATCCCGATGAGCTTCCTAGTCTTCCGTACCAGTACCGGTCGTCATCAAGG-TCAT 577
|||||| ||| ||||||| || ||||| ||||||||| ||||| |||| || || ||||
Sbjct 548 ATCAAACCCCAATGAGCTCCCGAGTCTACCGTACCAGAACCGGCCGTCTTCT-GGATCAT 606
Query 578 CC-CTGTTGACAACCGGTTCAAGA-AGTGATTCCCGGTTGTTGTGGTTGGTTAAGGTTAT 635
|| | ||| | |||| |||||||| | | |||||||||| || ||| |||||| |||| |
Sbjct 607 CCTC-GTTAAAAACCAGTTCAAGATATT-ATTCCCGGTTCTTTTGGCTGGTTACGGTT-T 663
Query 636 T-TGGACGGCGGTTATCTTGGGTTTAAACACGGTTTGTGATGCTTTGGAGTTTATTGTTA 694
| |||||||| ||| |||| ||| || |||||||||||||||||||||||||||| ||
Sbjct 664 TATGGACGGCAACTATGTTGGTTTTGAATACGGTTTGTGATGCTTTGGAGTTTATTGCTA 723
Query 695 CGACATTGTTCGTTAAGGACACCGAGACACCCATCAAAGGTGATTTCCTG-TCAACGAA- 752
| ||||||||| |||||||||| || ||||| || ||||| ||||| | | || | |
Sbjct 724 CAACATTGTTCCTTAAGGACACTGAAACACCAATAAAAGGCAATTTCGGGCT-AA-GCAC 781
Query 753 GAGTAAACAGCTGCGTTTGGTTCATCGTACTGTGAGCCTTGACGATATCAAGCTAACCAA 812
| |||||| | || || |||||||||| || || || ||||| || || ||||||| |||
Sbjct 782 GCGTAAACGGATGTGTATGGTTCATCGCACCGTAAGTCTTGATGACATAAAGCTAATCAA 841
Query 813 GAACGCAATGAACATGACTATCAACGATGTTGTACTTGGAGTAACCCAAGCTGGTCTCTC 872
||| || ||||| |||||| ||||||||||||||||||||||| | || |||||||||||
Sbjct 842 GAAAGCCATGAAAATGACTGTCAACGATGTTGTACTTGGAGTATCTCAGGCTGGTCTCTC 901
Query 873 GC-GATACCTTGC-GAGAAGATACGGAGAAGAAGAA-ACTAAAAATAGGAAG-Caaaaaa 928
|| | || ||| |||||||||||||||| ||||| | | || ||||| ||| ||
Sbjct 902 GCAG-TAT-TTGAAGAGAAGATACGGAGAACAAGAAGAATCTAAG-AGGAATTCAAGTAA 958
Query 929 -aGCTGCCTAAGAG-AATAAGGCTAAGATCAGCTCTGCTTGTAAACTTACGACCAACAAC 986
| | | ||| || |||||||||||| |||||||||||||||| || |||| || ||
Sbjct 959 TA--TACTTAA-AGGAATAAGGCTAAGGGGAGCTCTGCTTGTAAACATAAGACCGACGAC 1015
Query 987 TGGAATCCAGGATCTAGCAGATATGATGGAGAAAGGGTCTAAATGTAGGTGGGGAAATTG 1046
|||||| ||||||||||| |||||||||| ||||| ||||| ||||| |||||||||||
Sbjct 1016 TGGAATTCAGGATCTAGCTGATATGATGGCTAAAGGATCTAAGTGTAGATGGGGAAATTG 1075
Query 1047 GTTCGGCTATGTAGTATTTCCGTTTTCTATCGCATTACGCGATGACCCATTGGAACATCT 1106
| ||||||| | || |||||||| ||||| |||||| ||||||| ||||||||||||||
Sbjct 1076 GATCGGCTACATTGTCTTTCCGTTCTCTATTGCATTATGCGATGATCCATTGGAACATCT 1135
Query 1107 T-GAAATAGCTCA-GAAGACCATCAGTC-GAAAGAAGAATTCAT-ACGGCGCAATGCTAA 1162
||| ||| || | ||||||| | | | |||||||| || | | | || | || |
Sbjct 1136 CCGAAG-AGC-CAAGTCGACCATC-GACAGGAAGAAGAACTCGTTA-GAAGCTGTTCTTA 1191
Query 1163 CATACATA-TTCTGTAGAAT-CATTGTCAAATTGCTTGGAAT-CAAG-GTGGCGGCT-AG 1217
| | | | || | | ||| | || |||||| ||||||| | || | | ||| ||| |
Sbjct 1192 CGTTCGTTGTTGGGAA-AATAC-TTCTCAAATCGCTTGGAGTTCA-GCG-GGCAGCTTA- 1246
Query 1218 TATAATAAACAGA--ATGGTGTCAAACACAACGATGACGTTTTCGAACATGGTTGGTCCC 1275
| || |||||||| || ||||||| ||||||||| ||||||| || ||||||||||
Sbjct 1247 TGTACTAAACAGAGCAT--TGTCAAATACAACGATGTCGTTTTCAAATTTGGTTGGTCCT 1304
Query 1276 GTTGAAGAAGTTAGCTTCTATGGACATCCCATCACTTACTTTGCCTCAAGTGCTTATGGC 1335
|||||||| ||||||||||||||||| || | |||||| | ||| |||||| ||||||
Sbjct 1305 ATTGAAGAAATTAGCTTCTATGGACATACCGTTACTTACATGGCCCCAAGTGTTTATGGT 1364
Query 1336 CATCCCCATGCGTTGACGATACATTGTCAAAGTTATATGAATAAGATGACAATTACACT- 1394
|||||||||||||||||||| |||| ||||||||||||||| ||| |||| ||| | ||
Sbjct 1365 CATCCCCATGCGTTGACGATGCATTTTCAAAGTTATATGAACAAGTTGACGATTTC-CTT 1423
Query 1395 AATCG-TAGATCCAACGGTGATAAGTGATCCTCATCGGCTTTGTGACGACTGGGAAGAAT 1453
|| || | ||||||||||| || |||||||||||| || |||||||| ||||| ||||
Sbjct 1424 AA-CGGTCGATCCAACGGTCATTAGTGATCCTCATAAACTATGTGACGATTGGGAGGAAT 1482
Query 1454 CTCTCCGAAGCATTAAAGCCGCTGT 1478
|||| ||||||| ||||| |||||
Sbjct 1483 CTCTAAGAAGCATCAAAGCTGCTGT 1507
> Ahg485279 jgi|Araly1|485279|fgenesh2_kg.5__1271__AT3G49210.1
Length=1586
Score = 896 bits (485), Expect = 0.0
Identities = 1183/1506 (79%), Gaps = 103/1506 (7%)
Strand=Plus/Plus
Query 58 GAAGAGGAGCAACCACTTAGCCCGGCGGCGCGTCTGTTTCACGCGCCAGAGTTTAACTGC 117
||||| |||||||| ||||| |||||||||||| | |||||| |||| ||||||||||||
Sbjct 78 GAAGAAGAGCAACCGCTTAGTCCGGCGGCGCGTGTATTTCACTCGCCGGAGTTTAACTGC 137
Query 118 AACATCATATCAGTGATTGGTTTTAAG-AGTAAGCTCGATCCATG-TGTGTTTATCAG-A 174
|| |||| || |||||||| | ||| || ||| |||| ||| | |||| | ||| | |
Sbjct 138 TACGTCATCTCGGTGATTGGAGTCAAGAAG-AAGATCGAGCCA-GATGTGATCATC-GAA 194
Query 175 GGCTTTAAGGAAAGTTTTATCAGGCATCCTCGTTTCTCAAGTAAATTGGT--G-AC---C 228
|| || ||| || ||| ||||| |||||||||||||| ||||||||||| | || |
Sbjct 195 GGATTAAAGCAATCTTTGATCAGACATCCTCGTTTCTCCAGTAAATTGGTGAGTACATAC 254
Query 229 GAT--G----AGAATGGACAAAAC-CAAAGATGGGTTCGGACAAACGTGGTCGTCGAGGA 281
| | | |||| ||| |||| ||||| ||||||||||||||||||||||| | ||
Sbjct 255 GTTGGGAACAAGAAAAGAC-AAACTCAAAGTTGGGTTCGGACAAACGTGGTCGTTAACGA 313
Query 282 TCACTTCATCGTACCCAAAAT-CAAACCCCAAAACAT--AG-A--G-AACTCAAACGC-- 332
|||| |||| |||||| | || |||| | |||||||| || | | ||| |||||||
Sbjct 314 TCACGTCATAGTACCCGACATCCAAA-CGCAAAACATAGAGAACGGAAACGCAAACGCAG 372
Query 333 A----TTTCTCGAAGA-TTACGTTTCTGACCTCATGAAGATCCCGTTGGACACCTCGAGG 387
| ||||| | ||| ||||| || |||||| || | || | || |||| ||||| |
Sbjct 373 ACGTGTTTCTTG-AGAGCTACGTCTCCAACCTCACGACGGTCTCTTTAGACATCTCGAAG 431
Query 388 CCGTTATGGGAGCTTCACCTACTCGACTTGAAAACCTCAGACGCTGAAAACGTCGCCGTT 447
|| |||||| ||||||||||||| || ||||||||||| ||||| |||||||| ||||||
Sbjct 432 CCATTATGGCAGCTTCACCTACTAGATTTGAAAACCTCCGACGCAGAAAACGTTGCCGTT 491
Query 448 TTAAAGATCCATCACTCGGTT-GGTGATGGCATGTCAATCATGTCTCTTGTCCTCGCTTG 506
|| ||| | |||||||| || || || || ||||| ||||| | ||||||||||| ||
Sbjct 492 TTGAAGTTTCATCACTC-TTTAGGAGACGGTATGTCTCTCATGGCCCTTGTCCTCGCATG 550
Query 507 TATGCGTAAAACATCAAATCCC-GATGAGCTTCCTAGTCTTCCGTACCAGTACCGGTCGT 565
|||||||||||| ||||| ||| || ||||| || ||||| || ||||| ||||||| |
Sbjct 551 TATGCGTAAAACGTCAAA-CCCGGACGAGCTCCCAAGTCTACCAAACCAGAACCGGTCTT 609
Query 566 CATCAAGGTCATCCCTGTTGACAACCGGTTCAAGAAGTGATTCCCGGTTGTTGTGGTTGG 625
| || || || |||| ||| | |||||||||||| |||||||| |||| |||||||| |
Sbjct 610 CGTCTAGATCTTCCCGGTTAATGACCGGTTCAAGAGGTGATTCCAGGTTCTTGTGGTTAG 669
Query 626 TTAAGGTTATTTGGACGGCGGTTATCTTGGGTTTAAACACGGTTTGTGATGCTTTGGAGT 685
||| |||||||||| ||||| |||| |||| ||| || ||||||||||||||||||||||
Sbjct 670 TTATGGTTATTTGGTCGGCGATTATTTTGGTTTTGAATACGGTTTGTGATGCTTTGGAGT 729
Query 686 TTATTGTTACGACATTGTTCGTTAAGGACACCGAGACACCCATCAAAGGTGATTTCCTGT 745
|||||| ||| ||| ||||| |||||||||| || ||||| || ||||| ||||||| ||
Sbjct 730 TTATTGCTACAACAATGTTCCTTAAGGACACTGAAACACCGATAAAAGGCGATTTCCGGT 789
Query 746 CAACG-AAGAGTAAACAGCTGCGTTTGGTTCATCGTACTGTGAGCCTT-GACGATATCAA 803
|| | |||||||||| | || | ||||| || || || || ||| || ||||| || ||
Sbjct 790 TAA-GTAAGAGTAAACGGATGTGCTTGGTCCACCGAACCGTAAGC-TTAGACGACATAAA 847
Query 804 GCTAACCAAGAAC-GCAATGAACATGACTATCAACGATGTTGTACTTGGAGTAACCCAAG 862
||||| ||||| | || ||||| |||||| | |||||||| ||||||||||||| || |
Sbjct 848 GCTAATCAAGA-CTGCCATGAAGATGACTGTGAACGATGTAGTACTTGGAGTAAGTCAGG 906
Query 863 CTGGTCTCTCGCGATACCTTGC-GAGAAGATACGGAGA-AG-AAGAA-AC--TA--A-AA 913
|||| ||||||| |||| ||| ||||||||| ||||| || ||||| | || | ||
Sbjct 907 CTGGCCTCTCGCAATAC-TTGGAGAGAAGATATGGAGAGAGGAAGAAGAAAGTAGGAGAA 965
Query 914 -ATAG-GAAGC-aaaaa-aaG-C---TG-----CCTAAGAG-AATAAGGCTAAGATCAGC 959
||| ||| | ||||| || | || ||||| || ||||||||||||||||||
Sbjct 966 GATAAAGAATCTAAAAAGAATTCCACTGATATGCCTAA-AGCAATAAGGCTAAGATCAGC 1024
Query 960 TCTGCTTGTAAACTTACGACCAA-CAACTGGAATCCAGGATCTAGCAGATATGATGGAGA 1018
||| ||||| |||||| |||||| || ||||||| ||||||||||| |||||||||| |
Sbjct 1025 TCTACTTGTTAACTTAAGACCAAACA-CTGGAATTCAGGATCTAGCTGATATGATGGCTA 1083
Query 1019 AAGGGTCTAAATGTAGGTGGGGAAATTGGTTCGGCTATGTAGTATTTCCGTTTTCTATCG 1078
|||| ||||| ||||| |||||||||||| ||||||| |||| ||||||||||||||||
Sbjct 1084 AAGGATCTAAGTGTAGATGGGGAAATTGGATCGGCTACATAGTCTTTCCGTTTTCTATCG 1143
Query 1079 CATTACGCGATGACCCATTGGAACATCTTGAAATAGCTCAGAAG-ACCATC-AGTCGAAA 1136
|||||||||||| || || || ||||| ||| ||| || ||| | ||| | ||| ||
Sbjct 1144 GATTACGCGATGATCCGTTAGAGCATCTCCAAAGAGC-CAAAAGGATCATTGA-TCGCAA 1201
Query 1137 GAAGAATTCAT-ACGGCGCAATGC--TAACATACATATTCTGTAGAAT-CATTGTCAAAT 1192
||| ||||| | | | || ||| |||| | | || | || ||| |||| |||||
Sbjct 1202 GAAAAATTCGTTA-GAAGC--TGCCCTAACGTTCGTAGCCGGTC-AATTCATTCTCAAAA 1257
Query 1193 TGCTTGGAATCAAGGTGGCGGCTA-GTATAATAAACAGA--ATGGTGTCAAACACAACGA 1249
| ||||| | |||| || |||| | |||||||| ||| || |||||||||||||||
Sbjct 1258 CGTTTGGAGTTGAGGTAGCAGCTAAG-ATAATAAATAGAGCAT--TGTCAAACACAACGA 1314
Query 1250 TGACGTTTTCGAACATGGTTGGTCCCGTTGAAGAAGTTAGCTTCTATGGACATCCCATCA 1309
|| ||||||| || | ||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1315 TGTCGTTTTCAAATTTAATTGGTCCTATTGAAGAAATTAGCTTCTATGGACATCCCATCA 1374
Query 1310 CTTACTTTGCCTCAAGTGCT-TATGGCCATCCCCATGCGTTGACGATACATTGTCAA-AG 1367
||||| | ||| |||||| | ||||||||||| ||||| |||||||| |||| || | ||
Sbjct 1375 CTTACATGGCCCCAAGTG-TGTATGGCCATCCTCATGCATTGACGATGCATT-TCCAGAG 1432
Query 1368 TTATATGAATAAGATGACAATTACACTAA-TCGTAGATCCAACGGTGATAAGTGATCCTC 1426
||| ||||| ||||||| ||| | | | | |||||||||||||| |||||||||||||
Sbjct 1433 TTACATGAACCAGATGACGATTTCTTTGACT-GTAGATCCAACGGTCATAAGTGATCCTC 1491
Query 1427 ATCGGCTT-TGTGACGACTGGGAAGAA-TCTCTCCGAAGCATTAAAGCCGCTGTCACAA- 1483
|| | || | |||||| ||||| ||| ||| | | || ||||||||| ||||| |||
Sbjct 1492 ATAGACTACT-TGACGATTGGGA-GAAGTCTTTACAAAACATTAAAGCTGCTGTT-CAAG 1548
Query 1484 AAAGAG 1489
||||||
Sbjct 1549 AAAGAG 1554
> Ahg485276 jgi|Araly1|485276|fgenesh2_kg.5__1268__AT3G49180.1
Length=1429
Score = 126 bits (68), Expect = 5e-28
Identities = 77/81 (95%), Gaps = 1/81 (1%)
Strand=Plus/Minus
Query 1647 ATATCTCTTAATGTAATTCCAAAAATGTGTAGAAACAACAATAAAAAGCTTTCAATTGGT 1706
|||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1429 ATATCTCTCAATATAATTCCAAAAATGTGTAGAAACAACAATAAAA-GCTTTCAATTGGA 1371
Query 1707 ACCACCGATTTGTTCTTCTTC 1727
|||||||||||||||||||||
Sbjct 1370 ACCACCGATTTGTTCTTCTTC 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64791506745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5