BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49200.1
Length=1700
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937708 jgi|Araly1|937708|scaffold_501899.1 2331 0.0
Ahg485279 jgi|Araly1|485279|fgenesh2_kg.5__1271__AT3G49210.1 1243 0.0
> Ahg937708 jgi|Araly1|937708|scaffold_501899.1
Length=1556
Score = 2331 bits (1262), Expect = 0.0
Identities = 1453/1544 (94%), Gaps = 17/1544 (1%)
Strand=Plus/Plus
Query 1 ATGGAGATTAAGATACGACGAAGACGAGGGCAAATAGCGGAAACAACAGTGAAAAAGGAG 60
|||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||
Sbjct 21 ATGGAGATTAAGATACGACGAAGACGAGGGTACATAGCGGAAACAACAGTGGAAAAGGAG 80
Query 61 GTAGAAGAGGAGGAGCAACCGCTTAGTCCGGCGGCGCGTCTATTTCACGCACCGGAGTTT 120
|||||||||||||||||||| ||||| |||||||||||||| || ||||| |||||||||
Sbjct 81 GTAGAAGAGGAGGAGCAACCACTTAGCCCGGCGGCGCGTCTGTTCCACGCGCCGGAGTTT 140
Query 121 AACTGCTACATCATTTCGGTGGTTGGTTTAAAGAACAAGATCGAACCTGATATGATTATC 180
|||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||
Sbjct 141 AACTGCTACATCATTTCGGTGGTTGGTTTAAAGAACAAGATCCAACCAGATGTGATTATC 200
Query 181 GAAGGAATTAAGCAAACTTTGATGAGACATCCTCGTTTCTCCAGTAAATTGGTGAACAAT 240
||||||||||||||||||||||| |||||||||||||||||||||||||| | |
Sbjct 201 GAAGGAATTAAGCAAACTTTGATTAGACATCCTCGTTTCTCCAGTAAATT-G-G------ 252
Query 241 TGTAACAACAATAGACAGGAACAAAAATGGGTTCGAACAAACGTGGTGGTCGAGGATCAC 300
|| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 253 TG----AACAATAGAAAGGAACAAAAATGGGTTCGGACAAACGTGGTGGTCGAGGATCAC 308
Query 301 GTCATCATTCCAAAAATCCAAACACAACA-CATAGAGAACGCAAACGCAGACGTTTTTCT 359
||||||||||| |||||| |||| || | |||| |||||||||||||||||| ||||||
Sbjct 309 GTCATCATTCCCAAAATCGAAAC-GAAAATCATAAAGAACGCAAACGCAGACGCTTTTCT 367
Query 360 TGAGAGTTACGTCTCCGACCTCACTACGATCCCGTTAGACACCTCCAAGCCGTTATGGGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TGAGAGTTACGTCTCCGACCTCACTACGATCCCGTTAGACACCTCCAAGCCGTTATGGGA 427
Query 420 AGTTCATTTACTCGACTTGAAAACCTCGGACGCTGAAAACGTCGCGGTTTTAAGGATCCA 479
||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||
Sbjct 428 AGTTCATTTACTCGACTTGAAAACCTCCGACGCTGAAAACGTCGTGGTTTTAAGGGTCCA 487
Query 480 TCACTCGTTAGGCGACGGTATGTCTATGATGTCTCTAGTCCTCGCGTGCACCCGTAAAAC 539
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 488 TCACTCGTTAGGTGACGGTATGTCTATGATGTCTCTAGTCCTCGCGTGTACCCGTAAAAC 547
Query 540 ATCAAACCCCAATGAGCTCCCGAGTCTACCATACCAGAACCGGCCGTCTTCTGGATCATC 599
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 548 ATCAAACCCCAATGAGCTCCCGAGTCTACCGTACCAGAACCGGCCGTCTTCTGGATCATC 607
Query 600 CTCGTTAAAAACCAGTTCAAGATGTTATTCCCGGTTCTTTTGGCTAGTTATGGTTCTATG 659
||||||||||||||||||||||| ||||||||||||||||||||| |||| |||| ||||
Sbjct 608 CTCGTTAAAAACCAGTTCAAGATATTATTCCCGGTTCTTTTGGCTGGTTACGGTTTTATG 667
Query 660 GTCGGCAGCTTTGTTGGTTTTGAATACGGTTTGTGATGCTTTGGAGTTTATTGCTACGGC 719
| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 668 GACGGCAACTATGTTGGTTTTGAATACGGTTTGTGATGCTTTGGAGTTTATTGCTACAAC 727
Query 720 ATTGTTCCTTAAGGATACTGAAACACCAATCAAAGGCGATTTCAAGTTAAGCAAGGGTAA 779
||||||||||||||| |||||||||||||| |||||| ||||| | |||||| | ||||
Sbjct 728 ATTGTTCCTTAAGGACACTGAAACACCAATAAAAGGCAATTTCGGGCTAAGCACGCGTAA 787
Query 780 ACGGATGTGTATGGTTCATCGTACCGTAAGTCTTGATGACATAAAGCTAATCAAGAACGC 839
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 788 ACGGATGTGTATGGTTCATCGCACCGTAAGTCTTGATGACATAAAGCTAATCAAGAAAGC 847
Query 840 CATGAAAATGACTGTCAACGATGTTGTACTTGGAGTATCACAGGCTGGTCTCTCGCAGTA 899
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 848 CATGAAAATGACTGTCAACGATGTTGTACTTGGAGTATCTCAGGCTGGTCTCTCGCAGTA 907
Query 900 TTTGAAGAGAAGATACGGAGAACAAGAAGAGTCTAAGAGGAATTCAAGTAACATACCTAA 959
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||
Sbjct 908 TTTGAAGAGAAGATACGGAGAACAAGAAGAATCTAAGAGGAATTCAAGTAATATACTTAA 967
Query 960 AGGAATAAGGCTAAGGGCAGCTCTGCTTGTAAACCTAAGACCGACTACTGGAATCCAGGA 1019
||||||||||||||||| |||||||||||||||| |||||||||| |||||||| |||||
Sbjct 968 AGGAATAAGGCTAAGGGGAGCTCTGCTTGTAAACATAAGACCGACGACTGGAATTCAGGA 1027
Query 1020 TCTAGCTGATATGATGACTAAAGGATCAAAGTGTAGATGGGGAAATTGGATCGGCTACAT 1079
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1028 TCTAGCTGATATGATGGCTAAAGGATCTAAGTGTAGATGGGGAAATTGGATCGGCTACAT 1087
Query 1080 TATCTTTCCGTTCTCTATCGCATTATGCGATGATCCGTTGAAACATCTCCGAAGAGCCAA 1139
| |||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1088 TGTCTTTCCGTTCTCTATTGCATTATGCGATGATCCATTGGAACATCTCCGAAGAGCCAA 1147
Query 1140 GTCGACCATCGACAGGAAGAAGAACTCGTTAGAAGCTGTTCTTACATTCGTGGTTGGGAA 1199
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1148 GTCGACCATCGACAGGAAGAAGAACTCGTTAGAAGCTGTTCTTACGTTCGTTGTTGGGAA 1207
Query 1200 AATACTTCTCAACA-CGCTTGGAGTTCAGAGGGCAGCAAATGTACTAAACAGAGCATTGT 1258
|||||||||||| | |||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1208 AATACTTCTCAA-ATCGCTTGGAGTTCAGCGGGCAGCTTATGTACTAAACAGAGCATTGT 1266
Query 1259 CAAACACAACGATGTCGTTTTCAAATTTGGTTGGTCCTGTTGAAGAAATTAGCTTCTATG 1318
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1267 CAAATACAACGATGTCGTTTTCAAATTTGGTTGGTCCTATTGAAGAAATTAGCTTCTATG 1326
Query 1319 GACATACCGTTACTTACATAGCCCCAAGTGTTTATGGTCATCCCCATGCGTTGACGATGC 1378
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 GACATACCGTTACTTACATGGCCCCAAGTGTTTATGGTCATCCCCATGCGTTGACGATGC 1386
Query 1379 ATTTTCAAAGTTATATGAACAAGTTGACGATTTCCTTAACCGTCGATCCAACGGTCATTA 1438
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1387 ATTTTCAAAGTTATATGAACAAGTTGACGATTTCCTTAACGGTCGATCCAACGGTCATTA 1446
Query 1439 GTGATCCTCATAAACTATGTGATGATTGGGAGGAATCTCTAAGAAGCATCAAAGTTGTTG 1498
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||
Sbjct 1447 GTGATCCTCATAAACTATGTGACGATTGGGAGGAATCTCTAAGAAGCATCAAAGCTGCTG 1506
Query 1499 TTCAAGAAAGAACTTCTACTCAGTAGATTTAGCttttttt-ttt 1541
|||| ||||||| |||||||||||||||| |||||||||| |||
Sbjct 1507 TTCAGGAAAGAAGTTCTACTCAGTAGATTGAGCTTTTTTTCTTT 1550
> Ahg485279 jgi|Araly1|485279|fgenesh2_kg.5__1271__AT3G49210.1
Length=1586
Score = 1243 bits (673), Expect = 0.0
Identities = 1256/1528 (82%), Gaps = 78/1528 (5%)
Strand=Plus/Plus
Query 56 AGGAGGTAGAAGAGGAGGAGCAACCGCTTAGTCCGGCGGCGCGTCTATTTCACGCACCGG 115
|||| | ||| || || ||||||||||||||||||||||||||| |||||||| | ||||
Sbjct 67 AGGAAGAAGATGAAGAAGAGCAACCGCTTAGTCCGGCGGCGCGTGTATTTCACTCGCCGG 126
Query 116 AGTTTAACTGCTACATCATTTCGGTGGTTGGTTTAAAGAACAAGATCGAACCTGATATGA 175
|||||||||||||| |||| |||||| |||| | ||||| |||||||| || ||| |||
Sbjct 127 AGTTTAACTGCTACGTCATCTCGGTGATTGGAGTCAAGAAGAAGATCGAGCCAGATGTGA 186
Query 176 TTATCGAAGGAATT-AAGCAAACTTTGATGAGACATCCTCGTTTCTCCAGTAAATTGGTG 234
| |||||||| ||| |||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 187 TCATCGAAGG-ATTAAAGCAATCTTTGATCAGACATCCTCGTTTCTCCAGTAAATTGGTG 245
Query 235 A--ACA-A--TT-GTAACAACAATAGACAGGAA--CAAAAATGGGTTCGAACAAACGTGG 286
| ||| | || | ||||| || ||||| || |||| |||||||| ||||||||||
Sbjct 246 AGTACATACGTTGGGAACAAGAAAAGACA--AACTCAAAGTTGGGTTCGGACAAACGTGG 303
Query 287 TGGTCGAGGATCACGTCATCA-TTCCAAAAATCCAAACACAACACAT--AG-A--G-AAC 339
| || | ||||||||||| | | || | |||||||| ||| |||| || | | |||
Sbjct 304 TCGTTAACGATCACGTCAT-AGTACCCGACATCCAAACGCAAAACATAGAGAACGGAAAC 362
Query 340 GCAAACGCAGACGTTTTTCTTGAGAGTTACGTCTCCGACCTCACTACGATCCCGTTAGAC 399
|||||||||||||| ||||||||||| ||||||||| ||||||| ||| || | ||||||
Sbjct 363 GCAAACGCAGACGTGTTTCTTGAGAGCTACGTCTCCAACCTCACGACGGTCTCTTTAGAC 422
Query 400 ACCTCCAAGCCGTTATGGGAAG-TTCATTTACTCGACTTGAAAACCTCGGACGCTGAAAA 458
| ||| ||||| |||| || || |||| |||| || ||||||||||| ||||| |||||
Sbjct 423 ATCTCGAAGCCATTAT-GGCAGCTTCACCTACTAGATTTGAAAACCTCCGACGCAGAAAA 481
Query 459 CGTCGCGGTTTT-AAGGATCCATCACTCGTTAGGCGACGGTATGTCTATGATGTCTCTAG 517
||| || ||||| || | | |||||||| ||||| |||||||||||| | ||| | || |
Sbjct 482 CGTTGCCGTTTTGAA-GTTTCATCACTCTTTAGGAGACGGTATGTCTCTCATGGCCCTTG 540
Query 518 TCCTCGCGTGCACCCGTAAAACATCAAACCCCAATGAGCTCCCGAGTCTACCATACCAGA 577
||||||| || | |||||||| |||||||| | |||||||| ||||||||| ||||||
Sbjct 541 TCCTCGCATGTATGCGTAAAACGTCAAACCCGGACGAGCTCCCAAGTCTACCAAACCAGA 600
Query 578 ACCGGCCGTCTTCTGGATCATCCTC-GTTAAAAACCAGTTCAAGATGTTATTCCCGGTTC 636
||||| | || ||| |||| ||| | ||||| ||| |||||||| || ||||| |||||
Sbjct 601 ACCGGTCTTCGTCTAGATCTTCC-CGGTTAATGACCGGTTCAAGAGGTGATTCCAGGTTC 659
Query 637 TTTTGGCTAGTTATGGTTCTATGGTCGGCAGCTT-TGTTGGTTTTGAATACGGTTTGTGA 695
|| ||| ||||||||||| | |||||||| | || | |||||||||||||||||||||||
Sbjct 660 TTGTGGTTAGTTATGGTTATTTGGTCGGC-GATTATTTTGGTTTTGAATACGGTTTGTGA 718
Query 696 TGCTTTGGAGTTTATTGCTACGGCATTGTTCCTTAAGGATACTGAAACACCAATCAAAGG 755
||||||||||||||||||||| || ||||||||||||| ||||||||||| || |||||
Sbjct 719 TGCTTTGGAGTTTATTGCTACAACAATGTTCCTTAAGGACACTGAAACACCGATAAAAGG 778
Query 756 CGATTTCAAGTTAAGCAAGGGTAAACGGATGTG-TATGGTTCATCGTACCGTAAGTCTT- 813
||||||| |||||| ||| ||||||||||||| | |||| || || |||||||| |||
Sbjct 779 CGATTTCCGGTTAAGTAAGAGTAAACGGATGTGCT-TGGTCCACCGAACCGTAAG-CTTA 836
Query 814 GATGACATAAAGCTAATCAAGAAC-GCCATGAAAATGACTGTCAACGATGTTGTACTTGG 872
|| ||||||||||||||||||| | |||||||| |||||||| |||||||| ||||||||
Sbjct 837 GACGACATAAAGCTAATCAAGA-CTGCCATGAAGATGACTGTGAACGATGTAGTACTTGG 895
Query 873 AGTATCACAGGCTGGTCTCTCGCAGTATTTGAAGAGAAGATACGGAGA-AC-AAGAAGAG 930
|||| |||||||| |||||||| || ||| |||||||||| ||||| | |||||||
Sbjct 896 AGTAAGTCAGGCTGGCCTCTCGCAATACTTGGAGAGAAGATATGGAGAGAGGAAGAAGAA 955
Query 931 TCTA--AGA-G-----GAAT-TCAA--GTA----AC--ATA--CCTAAAGGAATAAGGCT 971
|| ||| | |||| | || | | || ||| ||||||| |||||||||
Sbjct 956 AGTAGGAGAAGATAAAGAATCTAAAAAGAATTCCACTGATATGCCTAAAGCAATAAGGCT 1015
Query 972 AAGGGCAGCTCTGCTTGTAAACCTAAGACCGA-CTACTGGAATCCAGGATCTAGCTGATA 1030
||| ||||||| ||||| ||| ||||||| | | |||||||| ||||||||||||||||
Sbjct 1016 AAGATCAGCTCTACTTGTTAACTTAAGACCAAAC-ACTGGAATTCAGGATCTAGCTGATA 1074
Query 1031 TGATGACTAAAGGATCAAAGTGTAGATGGGGAAATTGGATCGGCTACATTA-TCTTTCCG 1089
||||| |||||||||| |||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1075 TGATGGCTAAAGGATCTAAGTGTAGATGGGGAAATTGGATCGGCTACAT-AGTCTTTCCG 1133
Query 1090 TTCTCTATCGCATTATGCGATGATCCGTT-GAAACATCTCCGAAGAGCCAAGTCGACCAT 1148
|| ||||||| |||| ||||||||||||| || ||||||| ||||||||| || |||
Sbjct 1134 TTTTCTATCGGATTACGCGATGATCCGTTAGAG-CATCTCCAAAGAGCCAAAAGGATCAT 1192
Query 1149 CGA-CAGGAAGAAGAACTCGTTAGAAGCTGTTCTTACATTCGTGGTTGGGAAAAT-ACTT 1206
|| | | ||||| || ||||||||||||| || || ||||| | || || | | ||
Sbjct 1193 TGATC-GCAAGAAAAATTCGTTAGAAGCTGCCCTAACGTTCGTAGCCGGTCAATTCA-TT 1250
Query 1207 CTCAACACGCTTGGAGTTCAGAGG--GCAGCAAATG-TACTAAACAGAGCATTGTCAAAC 1263
||||| ||| |||||||| |||| ||||| || | || |||| |||||||||||||||
Sbjct 1251 CTCAAAACGTTTGGAGTT--GAGGTAGCAGCTAA-GATAATAAATAGAGCATTGTCAAAC 1307
Query 1264 ACAACGATGTCGTTTTCAAATTTGGTTGGTCCTGTTGAAGAAATTAGCTTCTATGGACAT 1323
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1308 ACAACGATGTCGTTTTCAAATTTAATTGGTCCTATTGAAGAAATTAGCTTCTATGGACAT 1367
Query 1324 ACCGTTACTTACATAGCCCCAAGTGTTTATGGTCATCCCCATGCGTTGACGATGCATTTT 1383
|| | |||||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct 1368 CCCATCACTTACATGGCCCCAAGTGTGTATGGCCATCCTCATGCATTGACGATGCATTTC 1427
Query 1384 CAAAGTTATATGAACAAGTTGACGATTTCCTTAACCGTCGATCCAACGGTCATTAGTGAT 1443
|| ||||| |||||| || |||||||||| || || || |||||||||||||| ||||||
Sbjct 1428 CAGAGTTACATGAACCAGATGACGATTTCTTTGACTGTAGATCCAACGGTCATAAGTGAT 1487
Query 1444 CCTCATAAACTA-TGTGATGATTGGGAGGAA-TCTCTA-AGAAGCATCAAAGTTGTTGTT 1500
||||||| |||| | ||| ||||||||| || ||| || | || ||| |||| || ||||
Sbjct 1488 CCTCATAGACTACT-TGACGATTGGGAG-AAGTCTTTACAAAA-CATTAAAGCTGCTGTT 1544
Query 1501 CAAGAAAGAA-CTTCTACTCAGTAGATT 1527
||||||||| || | |||| ||||||
Sbjct 1545 CAAGAAAGAGGCTCCCGCTCATTAGATT 1572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63763070130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5