BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49210.1
Length=1801
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485279 jgi|Araly1|485279|fgenesh2_kg.5__1271__AT3G49210.1 2368 0.0
Ahg937708 jgi|Araly1|937708|scaffold_501899.1 1227 0.0
> Ahg485279 jgi|Araly1|485279|fgenesh2_kg.5__1271__AT3G49210.1
Length=1586
Score = 2368 bits (1282), Expect = 0.0
Identities = 1488/1588 (94%), Gaps = 11/1588 (1%)
Strand=Plus/Plus
Query 66 AGCAGCAAACCATGGAGATTAAGACACGACGAGATACATCAGAAACATCCGTGAGGAAAG 125
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 AGCAGCAAACCATGGAGATTAAGACACGACGAGATACATCAGAAACAACCGTGAGGAAAG 60
Query 126 AC-GACGAGGAAGAAGTTGAGGAGGAGCAACCGCTTAGTCCGGCGGCGCGTGTGTTTCAC 184
|| || |||||||||| ||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 61 ACGGA-GAGGAAGAAGATGAAGAAGAGCAACCGCTTAGTCCGGCGGCGCGTGTATTTCAC 119
Query 185 GCACCGGAGTTTAACTGCTACGTCATCTCTGTTATTGGAATCAAGAAGAAGATCGATCCA 244
| |||||||||||||||||||||||||| || |||||| |||||||||||||||| |||
Sbjct 120 TCGCCGGAGTTTAACTGCTACGTCATCTCGGTGATTGGAGTCAAGAAGAAGATCGAGCCA 179
Query 245 GATGTGATCATCGAAGGATTAAAGCAAACTTTGATCAGACATCCTCGTTTCTCCAGTAAA 304
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 GATGTGATCATCGAAGGATTAAAGCAATCTTTGATCAGACATCCTCGTTTCTCCAGTAAA 239
Query 305 ATGGTGAGCACATCCGTTGGGAACAAGAAAAGACAAACACAAAGTTGGGTTCGGACAAAC 364
||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 240 TTGGTGAGTACATACGTTGGGAACAAGAAAAGACAAACTCAAAGTTGGGTTCGGACAAAC 299
Query 365 GTGGTCGTTACCGATCACGTCATTGTATCCGACATCCAAACGCAAAACATAGAGAAC-G- 422
|||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| |
Sbjct 300 GTGGTCGTTAACGATCACGTCATAGTACCCGACATCCAAACGCAAAACATAGAGAACGGA 359
Query 423 ---G-AAACGCAGACGCGTTTCTTGAGACCTACGTCTCGAACCTCACGACGGTCCCTTTA 478
| ||||||||||| ||||||||||| ||||||||| ||||||||||||||| |||||
Sbjct 360 AACGCAAACGCAGACGTGTTTCTTGAGAGCTACGTCTCCAACCTCACGACGGTCTCTTTA 419
Query 479 GACATCTCGAAGCCATTATGGCAGCTTCACCTACTCGATCTAAAAACCTCAGACGCCGAA 538
||||||||||||||||||||||||||||||||||| ||| | |||||||| ||||| |||
Sbjct 420 GACATCTCGAAGCCATTATGGCAGCTTCACCTACTAGATTTGAAAACCTCCGACGCAGAA 479
Query 539 AACGTTGCCGTTTTGAAGTTTCATCACTCTTTAGGAGACGGTATGTCTCTCATGGCCCTT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AACGTTGCCGTTTTGAAGTTTCATCACTCTTTAGGAGACGGTATGTCTCTCATGGCCCTT 539
Query 599 GTCCTTGCATGTATGCGTAAAACATCAAACCCTGACGAGCTCCCGAGTCTGCCGAACCAG 658
||||| ||||||||||||||||| |||||||| ||||||||||| ||||| || ||||||
Sbjct 540 GTCCTCGCATGTATGCGTAAAACGTCAAACCCGGACGAGCTCCCAAGTCTACCAAACCAG 599
Query 659 AACCGGTCGTCGTCTAGATCTTCCAGGCTAATGGCCGGTTCAAGAGGTGATTCCAGGTTC 718
|||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 600 AACCGGTCTTCGTCTAGATCTTCCCGGTTAATGACCGGTTCAAGAGGTGATTCCAGGTTC 659
Query 719 TTATGGTTAGTTATGGTTATATGGTCGGCGATTATGTTGGTTTTGAATACGGTTTGCGAT 778
|| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 660 TTGTGGTTAGTTATGGTTATTTGGTCGGCGATTATTTTGGTTTTGAATACGGTTTGTGAT 719
Query 779 GCTTTGGAGTTTATTGCTACAACAATGTTCCTTAAGGACACTGAAACACCGATCAAAGGC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 720 GCTTTGGAGTTTATTGCTACAACAATGTTCCTTAAGGACACTGAAACACCGATAAAAGGC 779
Query 839 GATTTCCGGTTTAGTAAGAGTAAACGGATGTGTTTGGTCCATCGTACCGTAAGCTTAGAC 898
||||||||||| |||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 780 GATTTCCGGTTAAGTAAGAGTAAACGGATGTGCTTGGTCCACCGAACCGTAAGCTTAGAC 839
Query 899 GACATAAAGCTAATCAAGAATACCATGAAGATGACTGTCAACGATGTAGTACTTGGAGTC 958
||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||
Sbjct 840 GACATAAAGCTAATCAAGACTGCCATGAAGATGACTGTGAACGATGTAGTACTTGGAGTA 899
Query 959 AGTCAGGCTGGCCTCTCGCAATATTTGGACagaagatatggagaaaagaagaagaaggta 1018
||||||||||||||||||||||| ||||| |||||||||||||| | ||||||||| |||
Sbjct 900 AGTCAGGCTGGCCTCTCGCAATACTTGGAGAGAAGATATGGAGAGAGGAAGAAGAAAGTA 959
Query 1019 ggagaagatcaagattctaaaaggaaagCCACTGATATGCCTAAA-CGAATAAGGCTACG 1077
||||||||| |||| ||||||| ||| ||||||||||||||||| | |||||||||| |
Sbjct 960 GGAGAAGATAAAGAATCTAAAAAGAATTCCACTGATATGCCTAAAGC-AATAAGGCTAAG 1018
Query 1078 ATCAGCTCTACTTGTTAACTTAAGACCCAACACTGGAATCCAGGATCTAGCTGATATGAT 1137
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1019 ATCAGCTCTACTTGTTAACTTAAGACCAAACACTGGAATTCAGGATCTAGCTGATATGAT 1078
Query 1138 GGCTAAAGGATCTACGTGTAGATGGGGAAATTGGATCGGCTACATTGTCTTTCCGTTTTC 1197
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1079 GGCTAAAGGATCTAAGTGTAGATGGGGAAATTGGATCGGCTACATAGTCTTTCCGTTTTC 1138
Query 1198 TATCGGATTACGCGACGATCCGTTACAACATCTCCGAAGAGCCAAAAGGATCATCGATCG 1257
||||||||||||||| ||||||||| | ||||||| |||||||||||||||||| |||||
Sbjct 1139 TATCGGATTACGCGATGATCCGTTAGAGCATCTCCAAAGAGCCAAAAGGATCATTGATCG 1198
Query 1258 CAAGAAAAATTCGTTAGAAGCTGCCCTAACGTTCGTCGCCGGTAAATTCATTCTCAAAAC 1317
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1199 CAAGAAAAATTCGTTAGAAGCTGCCCTAACGTTCGTAGCCGGTCAATTCATTCTCAAAAC 1258
Query 1318 ATTTGGAGTTCAGGTAGCAGCTAAGATAATAAATAGAGCATTGTCAAACACTACGATGTC 1377
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1259 GTTTGGAGTTGAGGTAGCAGCTAAGATAATAAATAGAGCATTGTCAAACACAACGATGTC 1318
Query 1378 ATTTTCAAATTTAATTGGTCCTATTGAAGAAATCAGCTTCTATGGACATCCCATTACTTA 1437
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1319 GTTTTCAAATTTAATTGGTCCTATTGAAGAAATTAGCTTCTATGGACATCCCATCACTTA 1378
Query 1438 CATGGCCCCAAGTGTGTATGGCCATCCCCATGCATTGACGATGCATTTCCAGAGTTACAT 1497
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1379 CATGGCCCCAAGTGTGTATGGCCATCCTCATGCATTGACGATGCATTTCCAGAGTTACAT 1438
Query 1498 GAACCAGATGACGATTTCGTTGACTGTAGATCCAACGGTCATAAGTGATCCTCATCGACT 1557
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1439 GAACCAGATGACGATTTCTTTGACTGTAGATCCAACGGTCATAAGTGATCCTCATAGACT 1498
Query 1558 ACTTGACGATTGGGAGAAATCTTTACAAAGCATCAAAGCTGCTGTGCAAGAAAGAGACTC 1617
|||||||||||||||||| |||||||||| ||| ||||||||||| |||||||||| |||
Sbjct 1499 ACTTGACGATTGGGAGAAGTCTTTACAAAACATTAAAGCTGCTGTTCAAGAAAGAGGCTC 1558
Query 1618 CCGCTCATTAGATTGAATC-AAATCTTT 1644
|||||||||||||||| | ||||||||
Sbjct 1559 CCGCTCATTAGATTGATTTTAAATCTTT 1586
> Ahg937708 jgi|Araly1|937708|scaffold_501899.1
Length=1556
Score = 1227 bits (664), Expect = 0.0
Identities = 1254/1529 (82%), Gaps = 79/1529 (5%)
Strand=Plus/Plus
Query 143 GAGGAGGAGCAACCGCTTAGTCCGGCGGCGCGTGTGTTTCACGCACCGGAGTTTAACTGC 202
|||||||||||||| ||||| |||||||||||| |||| ||||| |||||||||||||||
Sbjct 87 GAGGAGGAGCAACCACTTAGCCCGGCGGCGCGTCTGTTCCACGCGCCGGAGTTTAACTGC 146
Query 203 TACGTCATCTCTGTTATTGGAATCAAGAAGAAGATCGATCCAGATGTGATCATCGAAGG- 261
||| |||| || || |||| | ||||| |||||| | ||||||||||| ||||||||
Sbjct 147 TACATCATTTCGGTGGTTGGTTTAAAGAACAAGATCCAACCAGATGTGATTATCGAAGGA 206
Query 262 ATTAAAGCAAACTTTGATCAGACATCCTCGTTTCTCCAGTAAAATGGTGAGCACATCCGT 321
||| |||||||||||||| |||||||||||||||||||||||| |||| | | | |
Sbjct 207 ATT-AAGCAAACTTTGATTAGACATCCTCGTTTCTCCAGTAAATTGGT--G-A-A--C-- 257
Query 322 TGGGAACAAGAAAAGACAAACACAAAGTTGGGTTCGGACAAACGTGGTCGT-TACCGATC 380
|| || |||| |||| ||| |||||||||||||||||||| || | ||||
Sbjct 258 ----AA-TAG-AAAG--GAACA-AAA-ATGGGTTCGGACAAACGTGGTGGTCGA-GGATC 306
Query 381 ACGTCATTGTAT-CCGACATCCAAACGCAAAA-CATAGAGAACGGAAACGCAGACGCGTT 438
||||||| | | || | ||| ||||| |||| |||| |||||| |||||||||||| ||
Sbjct 307 ACGTCATCAT-TCCCAAAATCGAAACG-AAAATCATAAAGAACGCAAACGCAGACGCTTT 364
Query 439 TCTTGAGACCTACGTCT-CGAACCTCACGACGGTCCCTTTAGACATCTCGAAGCCATTAT 497
|||||||| ||||||| || ||||||| ||| |||| ||||||| ||| ||||| ||||
Sbjct 365 TCTTGAGAGTTACGTCTCCG-ACCTCACTACGATCCCGTTAGACACCTCCAAGCCGTTAT 423
Query 498 -GGCAGCTTCACCTACTCGATC-TAAAAACCTCAGACGCCGAAAACGTTGCCGTTTTGAA 555
|| || |||| ||||||| | | |||||||| ||||| |||||||| | ||||| ||
Sbjct 424 GGGAAG-TTCATTTACTCGA-CTTGAAAACCTCCGACGCTGAAAACGTCGTGGTTTT-AA 480
Query 556 -GTTTCATCACTCTTTAGGAGACGGTATGTCTCTCATGGCCCTTGTCCTTGCATGTATGC 614
| | |||||||| ||||| |||||||||||| | ||| | || ||||| || |||| |
Sbjct 481 GGGTCCATCACTCGTTAGGTGACGGTATGTCTATGATGTCTCTAGTCCTCGCGTGTACCC 540
Query 615 GTAAAACATCAAACCCTGACGAGCTCCCGAGTCTGCCGAACCAGAACCGGTCGTCGTCTA 674
|||||||||||||||| | |||||||||||||| ||| ||||||||||| |||| |||
Sbjct 541 GTAAAACATCAAACCCCAATGAGCTCCCGAGTCTACCGTACCAGAACCGGCCGTCTTCTG 600
Query 675 GATCTTCCAGGCTAATGGCCGGTTCAAGAGGTGATTCCAGGTTCTTATGGTTAGTTATGG 734
|||| ||| | ||| || |||||||| | ||||| ||||||| ||| | |||| ||
Sbjct 601 GATCATCCTCGTTAAAAACCAGTTCAAGATATTATTCCCGGTTCTTTTGGCTGGTTACGG 660
Query 735 TTATATGGTCGGCGATTATGTTGGTTTTGAATACGGTTTGCGATGCTTTGGAGTTTATTG 794
|| ||||| |||| | |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 661 TTTTATGGACGGCAACTATGTTGGTTTTGAATACGGTTTGTGATGCTTTGGAGTTTATTG 720
Query 795 CTACAACAATGTTCCTTAAGGACACTGAAACACCGATCAAAGGCGATTTCCGGTTTAGTA 854
|||||||| ||||||||||||||||||||||||| || |||||| ||||| || | || |
Sbjct 721 CTACAACATTGTTCCTTAAGGACACTGAAACACCAATAAAAGGCAATTTCGGGCTAAGCA 780
Query 855 AGAGTAAACGGATGTGTTTGGTCCATCGTACCGTAAG-CTTAGACGACATAAAGCTAATC 913
| |||||||||||||| |||| ||||| |||||||| ||| || |||||||||||||||
Sbjct 781 CGCGTAAACGGATGTGTATGGTTCATCGCACCGTAAGTCTT-GATGACATAAAGCTAATC 839
Query 914 AAGAATA-CCATGAAGATGACTGTCAACGATGTAGTACTTGGAGTCA-GTCAGGCTGGCC 971
||||| | ||||||| ||||||||||||||||| ||||||||||| | ||||||||| |
Sbjct 840 AAGAA-AGCCATGAAAATGACTGTCAACGATGTTGTACTTGGAGT-ATCTCAGGCTGGTC 897
Query 972 TCTCGCAATATTTGGACagaagatatggagaaaagaagaagaaggtaggagaagatcaag 1031
||||||| |||||| | |||||||| |||| || |||||||| || || || |
Sbjct 898 TCTCGCAGTATTTGAAGAGAAGATACGGAG--AACAAGAAGAATCTA--AG-AG---GA- 948
Query 1032 attctaaaaggaaagCCACTGATATGCCTAAACGAATAAGGCTACGATCAGCTCTACTTG 1091
|||| || | | | | ||| | |||| ||||||||||| | |||||| ||||
Sbjct 949 ATTC---AA-G-TA---A-T-ATA--CTTAAAGGAATAAGGCTAAGGGGAGCTCTGCTTG 996
Query 1092 TTAACTTAAGACCCAAC-ACTGGAATCCAGGATCTAGCTGATATGATGGCTAAAGGATCT 1150
| ||| ||||| || || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 997 TAAACATAAGA-CCGACGACTGGAATTCAGGATCTAGCTGATATGATGGCTAAAGGATCT 1055
Query 1151 ACGTGTAGATGGGGAAATTGGATCGGCTACATTGTCTTTCCGTTTTCTATCGGATTACGC 1210
| |||||||||||||||||||||||||||||||||||||||||| ||||| | |||| ||
Sbjct 1056 AAGTGTAGATGGGGAAATTGGATCGGCTACATTGTCTTTCCGTTCTCTATTGCATTATGC 1115
Query 1211 GACGATCCGTTACAACATCTCCGAAGAGCCAAAAGGATCATCGATC-GCAAGAAAAATTC 1269
|| ||||| || ||||||||||||||||||| || |||||| | | ||||| || ||
Sbjct 1116 GATGATCCATTGGAACATCTCCGAAGAGCCAAGTCGACCATCGA-CAGGAAGAAGAACTC 1174
Query 1270 GTTAGAAGCTGCCCTAACGTTCGTCGCCGGTAAATT-CATTCTCAAAACATTTGGAGTTC 1328
||||||||||| || |||||||| | || ||| | | |||||||| | |||||||||
Sbjct 1175 GTTAGAAGCTGTTCTTACGTTCGTTGTTGGGAAAATAC-TTCTCAAATCGCTTGGAGTTC 1233
Query 1329 AG-GTAGCAGCTAA-GATAATAAATAGAGCATTGTCAAACACTACGATGTCATTTTCAAA 1386
|| | |||||| | | || |||| |||||||||||||| || |||||||| ||||||||
Sbjct 1234 AGCGG-GCAGCTTATG-TACTAAACAGAGCATTGTCAAATACAACGATGTCGTTTTCAAA 1291
Query 1387 TTTAATTGGTCCTATTGAAGAAATCAGCTTCTATGGACATCCCATTACTTACATGGCCCC 1446
||| ||||||||||||||||||| ||||||||||||||| || ||||||||||||||||
Sbjct 1292 TTTGGTTGGTCCTATTGAAGAAATTAGCTTCTATGGACATACCGTTACTTACATGGCCCC 1351
Query 1447 AAGTGTGTATGGCCATCCCCATGCATTGACGATGCATTTCCAGAGTTACATGAACCAGAT 1506
|||||| ||||| ||||||||||| |||||||||||||| || ||||| |||||| || |
Sbjct 1352 AAGTGTTTATGGTCATCCCCATGCGTTGACGATGCATTTTCAAAGTTATATGAACAAGTT 1411
Query 1507 GACGATTTCGTTGACTGTAGATCCAACGGTCATAAGTGATCCTCATCGACTACT-TGACG 1565
||||||||| || || || |||||||||||||| |||||||||||| |||| | |||||
Sbjct 1412 GACGATTTCCTTAACGGTCGATCCAACGGTCATTAGTGATCCTCATAAACTA-TGTGACG 1470
Query 1566 ATTGGGAGAAATCTTTACA-AAGCATCAAAGCTGCTGTGCAAGAAAGAGACTCCCGCTCA 1624
|||||||| ||||| || | |||||||||||||||||| || |||||| | | | ||||
Sbjct 1471 ATTGGGAGGAATCTCTA-AGAAGCATCAAAGCTGCTGTTCAGGAAAGA-AGTTCTACTCA 1528
Query 1625 TTAGATTGAATCAAATCTTTTCttttttt 1653
|||||||| | | ||||||||||||
Sbjct 1529 GTAGATTGAG-CTT-T-TTTTCTTTTTTT 1554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67610184875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5