BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49220.1
Length=2053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485280 jgi|Araly1|485280|fgenesh2_kg.5__1272__AT3G49220.1 3110 0.0
Ahg494979 jgi|Araly1|494979|fgenesh2_kg.8__795__AT5G49180.1 62.1 2e-08
> Ahg485280 jgi|Araly1|485280|fgenesh2_kg.5__1272__AT3G49220.1
Length=1961
Score = 3110 bits (1684), Expect = 0.0
Identities = 1872/1964 (95%), Gaps = 7/1964 (0%)
Strand=Plus/Plus
Query 29 AATGTAAATCAAAAGAGAACTAAACCAAGAAAC-AAAATGGGATACGAAAGGCTCGGACC 87
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 AATGTAAATCAAAAGAGAACTAAACCAAGAAACAAAAATGGGATACGAAAGGCTCGGACC 60
Query 88 ATCCGGAGCAACTGGTTCGGTCACC-ACCTCCACTACTACAGCTCCAATCCTTAACCAAG 146
||| |||||||||||||||||| || | |||||||||||||||||| ||||| |||||||
Sbjct 61 ATCTGGAGCAACTGGTTCGGTC-CCAATCTCCACTACTACAGCTCCGATCCTAAACCAAG 119
Query 147 TCTCCACGTCA-GAGCAACCGGAGAACAACAACCGAAGAAGCAAAAAGAAGCTTGTCGTA 205
||||||||||| | |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 120 TCTCCACGTCATCA-CAACCGGAGAACAACAACCGGAGAAGCAAAAAGAAGCTTGTAGTG 178
Query 206 TCATCAATCGTCTTAGCCATCTCACTTATCCTCGCCGCCGCGATCTTCGCCGGAGTCAGA 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TCATCAATCGTCTTAGCCATCTCACTTATCCTCGCCGCCGCGATCTTCGCCGGAGTCAGA 238
Query 266 TCACGTCTCAAGTTAAACCAATCAGTCCCAGGCCTAGCTCGTAAACCGAGTCAAGCAATC 325
||||||||||||||||||||||| || |||||||||||||||||||| || |||||||||
Sbjct 239 TCACGTCTCAAGTTAAACCAATCTGTTCCAGGCCTAGCTCGTAAACCAAGCCAAGCAATC 298
Query 326 TCTAAAGCTTGTGAGTTAACTCGTTTCCCCGAGTTATGCGTTGACTCACTCATGGACTTT 385
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TCTAAAGCTTGTGGGTTAACTCGTTTCCCCGAGTTATGCGTTGACTCACTCATGGACTTT 358
Query 386 CCCGGCTCACTCGCCGCTTCCTCCTCTAAAGATCTCATCCACGTGACTGTGAACATGACG 445
|||||||||||||||||||||||||| |||||||| ||||||||||| || |||||||||
Sbjct 359 CCCGGCTCACTCGCCGCTTCCTCCTCCAAAGATCTGATCCACGTGACGGTTAACATGACG 418
Query 446 CTCCACCACTTCAGCCACGCTCTCTACTCCTCTGCTTCCCTCTCCTTCGTCGACATGCCG 505
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CTCCACCACTTCAGTCGCGCTCTCTACTCCTCTGCTTCCCTCTCCTTCGTCGACATGCCG 478
Query 506 CCACGTGCTCGCTCAGCTTACGACTCTTGCGTCGAGCTACTTGACGATTCCGTTGACGCG 565
||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 479 CCACGTGCTCGCTCAGCTTACGACTCTTGCGTCGAGCTACTAGATGATTCCGTCGACGCG 538
Query 566 CTATCACGCGCTCTTTCCTCCGTCGTATCCTCCTCCGCTAAGCCGCAAGATGTTACAACG 625
|| ||||||||||| |||||||||||||| ||||| || ||||| ||||| ||||| |||
Sbjct 539 CTCTCACGCGCTCTCTCCTCCGTCGTATCGTCCTCGGCCAAGCCACAAGACGTTACCACG 598
Query 626 TGGCTTAGCGCGGCTTTAACAAACCATGACACGTGTACTGAAGGATTCGACGGCGTCGAC 685
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 599 TGGCTTAGCGCGGCTTTAACGAACCATGACACGTGCACTGAAGGATTCGACGGCGTCGAC 658
Query 686 GACGGTGGAGTGAAGGATCATATGACGGCGGCGTTACAGAATCTTTCTGAGCTTGTTAGT 745
|||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||
Sbjct 659 GACGGTGGAGTGAAGGATCATATGACAGCGGCGATAAAGAATCTTTCTGAGCTTGTTAGT 718
Query 746 AACTGTCTTGCTATATTCTCGGCGAGTCACGACGGTGACGATTTCGCCGGAGTTCCAATA 805
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 719 AACTGTCTTGCTATATTCTCGGCGAGCCACGACGGTGACGATTTCGCCGGAGTTCCGATA 778
Query 806 CAGAACAGGAGGCTGCTGGGAGTGGAGGAACGAGAAGAGAAATTCCCGAGATGGATGAGA 865
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CAGAACAGGAGACTGTTGGGAGTGGAGGAACGAGAAGAGAAATTCCCGAGATGGATGAGG 838
Query 866 CCAAAAGAACGCGAGATACTGGAAATGCCGGTATCTCAGATACAAGCTGATATTATCGTA 925
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CCAAGAGAACGCGAGATATTGGAAATGCCGGTATCTCAGATACAAGCTGATATTATCGTC 898
Query 926 TCGAAAGACGGTAACGGCACGTGCAAAACTATATCGGAAGCTATCAAGAAAGCTCCTCAG 985
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TCGAAAGACGGCAACGGCACGTGCAAAACTATATCGGAAGCTATCAAGAAAGCTCCTCAG 958
Query 986 AACAGTACTCGCCGGATAATTATCTACGTCAAGGCCGGAAGATATGAAGAGAACAACCTC 1045
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 959 AACAGTACTCGCCGGATAATTATCTATGTCAAGGCCGGAAGGTATGAAGAGAACAACCTC 1018
Query 1046 AAGGTCGGTAGGaaaaaaaTTAATTTGATGTTCGTTGGAGATGGCAAGGGTAAAACTGTT 1105
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1019 AAGGTCGGTAGGAAAAAAATAAATTTGATGTTCGTTGGAGATGGGAAGGGTAAAACTGTC 1078
Query 1106 ATTTCGGGAGGCAAAAGTATATTTGACAACATCACTACTTTCCACACGGCGTCATTTGCT 1165
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ATTTCGGGAGGGAAAAGTATATTTGACAACATCACTACTTTCCACACGGCGTCATTTGCT 1138
Query 1166 GCGACCGGAGCTGGATTTATTGCAAGGGACATCACATTCGAAAACTGGGCCGGTCCAGCG 1225
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1139 GCGACCGGAGCTGGATTTATTGCAAGGGACATCACATTCGAAAATTGGGCTGGTCCAGCG 1198
Query 1226 AAGCACCAAGCCGTGGCTCTCCGCATCGGAGCTGACCACGCAGTGATCTACCGATGCAAT 1285
||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 1199 AAGCACCAAGCGGTGGCTCTCCGTATTGGGGCTGACCACGCAGTGATCTACCGATGCAAT 1258
Query 1286 ATAATCGGTTACCAAGACACACTCTACGTCCATTCAAACCGCCAATTCTTTCGTGAATGC 1345
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 1259 ATAATCGGTTACCAAGACACACTTTACGTTCATTCAAACCGTCAATTCTTTCGTGAATGC 1318
Query 1346 GATATCTACGGTACAGTCGATTTTATCTTTGGTAACGCAGCCGTCGTACTACAAAACTGT 1405
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1319 GATATCTACGGTACAGTCGATTTTATCTTTGGTAATGCAGCCGTCGTACTACAAAACTGT 1378
Query 1406 AGCATCTACGCACGGAAGCCAATGGATTTTCAGAAAAATACAATCACGGCTCAAAACAGA 1465
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1379 AGCATCTACGCACGAAAGCCCATGGATTTTCAGAAAAATACAATCACGGCTCAAAACAGA 1438
Query 1466 AAAGATCCGAACCAAAACACCGGAATATCAATACATGCGTCTAGGGTTCTTGCAGCATCC 1525
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1439 AAAGATCCGAACCAAAACACCGGAATATCGATACATGCGTCTAGGGTTCTTGCAGCATCC 1498
Query 1526 GATCTCCAAGCGACAAACGGTAGTACACAGACGTATCTAGGCCGACCTTGGAAGCTATTC 1585
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1499 GATCTCCAAGCGACAAACGGTAGTACCCAGACGTATCTAGGCCGACCTTGGAAGCTATTC 1558
Query 1586 TCTAGGACAGTGTATATGATGTCGTATATCGGTGGTCATGTACACACGAGAGGTTGGCTC 1645
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TCTAGGACGGTGTATATGATGTCGTATATCGGTGGTCATGTACACACGAGAGGTTGGCTC 1618
Query 1646 GAGTGGAACACAACATTTGCTTTAGATACTTTGTATTATGGAGAGTATTTGAACAGTGGA 1705
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 1619 GAGTGGAACACAACATTTGCTTTAGATACGTTATATTACGGAGAGTATTTGAACAGTGGA 1678
Query 1706 CCTGGGTCGGGTCTCGGGCAACGTGTGAGCTGGCCGGGTTATCGGGTCATCAATTCGACG 1765
|| ||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1679 CCGGGGTCAGGTCTCGGGCAACGTGTGACCTGGCCGGGGTATCGGGTCATCAATTCGACG 1738
Query 1766 GCCGAGGCAAACCGGTTCACTGTGGCAGAATTTATATACGGTTCCTCGTGGTTGCCATCG 1825
|||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1739 GCCGAGGCTAACCGGTTCACGGTGGCTGAATTTATATACGGTTCGTCGTGGTTGCCTTCG 1798
Query 1826 ACCGGAGTTTCGTTCTTGGCCGGATTAAGCATATAGGTAGAGA-AAAAATTGAAATGCTT 1884
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1799 ACCGGAGTTTCGTTCTTGGCCGGATTAAGCATATAGGTAGAGGGAAAAAT-GAAATGCTT 1857
Query 1885 ATTTTTCCGATGAATTGTTTCATTCTTACGGTCCTTATATTAATGGACATATCAGTATTC 1944
|| |||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 1858 ATGTTTCCGATGAATTGTTTCATTCTTACGGTCCTTATAATAATGGACATATCATTAATC 1917
Query 1945 CAATATATATGAGTATATTTTAACTTTTAATTGTAATGTCTCCA 1988
| ||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1918 CTATATATATGAGTATATTTTAACTTTTAATTGTACTATCTCCA 1961
> Ahg494979 jgi|Araly1|494979|fgenesh2_kg.8__795__AT5G49180.1
Length=1905
Score = 62.1 bits (33), Expect = 2e-08
Identities = 47/54 (87%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 1292 GGTTACCAAGACACACTCTACGTCCATTCAAACCGCCAATTCTTTCGTGAATGC 1345
||||||||||||||||||||||||||||| | || || ||||| ||||| |||
Sbjct 1270 GGTTACCAAGACACACTCTACGTCCATTCTCATCGTCAGTTCTTCCGTGATTGC 1323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77208926615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5