BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G49250.1 Length=1810 Score E Sequences producing significant alignments: (Bits) Value Ahg485283 jgi|Araly1|485283|fgenesh2_kg.5__1275__AT3G49250.1 2139 0.0 > Ahg485283 jgi|Araly1|485283|fgenesh2_kg.5__1275__AT3G49250.1 Length=1522 Score = 2139 bits (1158), Expect = 0.0 Identities = 1313/1387 (95%), Gaps = 13/1387 (1%) Strand=Plus/Plus Query 162 GATTCTCCGGTGATAACATTGAAGCTGAGGAGCAATGTATCCGACTGGTCAACAGATTTC 221 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 GATTCTCCGGTGATAACATTGAAGCTGAGGAGCAATGTATCCGAATGGTCAACAGATTTC 60 Query 222 GTTTCAGACCACTCCGTTGAATGTTCAAGATCCAACAAGGATGATGAATTTGGATCAATC 281 ||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||| Sbjct 61 GTTTCAGACCACTCCTTTGAATGTTCAAGATCCAACAACGATGATGAATTTGGGTCAATC 120 Query 282 TTCACCAGTTGCAAGAAATGAAACTC---A--GA--A-T-GGAGGAGGCATTGCTCACGC 332 |||||||||| ||||| ||| ||||| | || | | |||||||||||||||||||| Sbjct 121 TTCACCAGTTCCAAGAGATGTAACTCAGAATGGAGGAGTAGGAGGAGGCATTGCTCACGC 180 Query 333 TGAGTTTGCTATGTTCAATTCCAAGAGGCTTGAATCTGATCTTGAAGCTATGGGTAACAA 392 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 181 TGAGTTTGCTATGTTCAATTCCAAGAGGCTTCAATCTGATCTTGAAGCTATGGGTAACAA 240 Query 393 AATCAAACAGCATGAGGATAATCTCAAGTTTCTCAAGTCTCAGAAAAACAAAATGGATGA 452 | ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 241 ACTCAAACAGCATGAGGATAATCTCAAGTTTCTCAAGTCACAGAAAAACAAATTGGATGA 300 Query 453 AGCTATCGTCGACTTGCAAGTTCATATGAGTAAGCTTAACTCGTCTCCTACTCCTAGAAG 512 ||| |||||||||||||||||||||||||| |||||| | ||||||||||||| |||||| Sbjct 301 AGCAATCGTCGACTTGCAAGTTCATATGAGCAAGCTTCATTCGTCTCCTACTCGTAGAAG 360 Query 513 TGAAAACTCTGATAACAGTCTTCAGGGTGAAGATATCAATGCACAGATCCTTCGCCACGA 572 |||||| | |||||||| |||||||||||||||||| |||| |||||||||||||||||| Sbjct 361 TGAAAATTGTGATAACAATCTTCAGGGTGAAGATATTAATGAACAGATCCTTCGCCACGA 420 Query 573 AAACTCAGCTGCTGGAGTTTTAAGTCTGGTTGAGACTCT-TCATGGTGCTCAAGCTTCTC 631 |||||||||||||||||||||| |||||||||||||| | |||||| || || ||||||| Sbjct 421 AAACTCAGCTGCTGGAGTTTTAGGTCTGGTTGAGACT-TGTCATGGCGCGCAGGCTTCTC 479 Query 632 AGTTGATGTTGACAAAAGGTGTTGTTGGTGTTGTAGCGAAACTTGGGAAGGTCAATGATG 691 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 AGTTGATGTTGACAAAAGGTGTTGTTGGTGTTGTAGCGAAACTTGGGAAGGTCAATGATG 539 Query 692 AAAATCTCAGCCAGATTTTGTCGAATTATTTGGGGACTCGCTCAATGTTGGCAGTTGTAT 751 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 540 AAAATCTCAGCCAGATTTTATCGAATTATTTGGGGACTCGCTCAATGTTGGCAGTTGTAT 599 Query 752 GCAGGAATTATGAAAGTGTTACGGCTTTAGAGGCTTATGATAACCATGGCAACATTGATA 811 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 600 GCAGGAATTATGAAAGTGTTACGGCTTTAGAGGCTTATGATAACCAAGGCAACATTGATA 659 Query 812 TAAATGCTGGCCTTCATTGCCTTGGCTCTTCGATTGGAAGAGAG-ATTGGAGACAGTTTT 870 |||||||||||||||| |||||||| |||||||||| ||| | ||||||| || |||| Sbjct 660 GAAATGCTGGCCTTCATGGCCTTGGCGCTTCGATTGGCAGA-ACCATTGGAGGCAATTTT 718 Query 871 GATGCCATCTGCCTTGAAAACCTGAGGCCGTATGTTGGTCAGCACATAGCTGATGATCTG 930 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 719 GATGCCATCTGCCTTGAAAACCTGAGGCCGTACGTTGGTCAGCACATAGCTGATGATCTG 778 Query 931 CAAAGAAGGCTTGATCTTCTGAAACCAAAATTACCTAATGGTGAGTGTCCTCCCGGGTTT 990 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 779 CAAAGAAGGCTTGATCTTCTGAAACCAAAATTGCCTAATGGTGAGTGTCCTCCCGGGTTT 838 Query 991 CTCGGATTTGCAGTGAATATGATACAGATCGATCCAGCTTACTTGCTCTGTGTCACATCA 1050 || ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 839 CTTGGATTTGCAGTGAATATGATACAAATCGATCCGGCTTACTTGCTCTGTGTCACATCA 898 Query 1051 TATGGATATGGTCTTCGTGAGACCTTGTTCTACAATCTATTCTCTCGCCTTCAAGTTTAC 1110 |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 899 TATGGACATGGTCTTCGTGAGACCTTGTTCTACAGTCTATTCTCTCGCCTTCAAGTTTAC 958 Query 1111 AAAACAAGGGCCGATATGATTAGTGCCCTCCCATGCATAAGTGATGGTGCGGTATCTTTG 1170 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 959 AAAACAAGGGCCGATATGATTAGTGCCCTCCCATGCATAAGTGATGGTGCAGTATCTTTG 1018 Query 1171 GATGGAGGAATCATCAGGAAAACGGGGATCTTCAATCTTGGAAACCGTGATGAGGTGAAC 1230 ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 1019 GATGGAGGAATCATCAGGACACCGGGGATCTTCAATCTTGGAAACCGTGATGAGGTGAAT 1078 Query 1231 GTGAGATTTGCAAAGCCAACTGCTTCTCGCACGATGGACAACTATAGTGAGGCGGAGAAG 1290 |||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| | Sbjct 1079 GTGAGATTTGCAAAGCCAACTGCTTCACGAACGATGGACAACTATAGTGAAGCGGAGAGG 1138 Query 1291 AAAATGAAAGAGCTGAAATGGAAAAAGGAGAAAACGCTGGAGGACATTAAGCGGGAGCAA 1350 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1139 AAAATGAAAGAGCTGAAATGGAAGAAGGAGAAAACGCTGGAGGACATTAAGCGAGAGCAA 1198 Query 1351 GTGCTCCGTGAGCATGCCGTCTTCAACTTTGGCAAGAAGAAAGAAGAATTTGTTCGATGC 1410 ||||| ||||||||||| |||||||||||||||||||| |||||||| |||||||||||| Sbjct 1199 GTGCTTCGTGAGCATGCTGTCTTCAACTTTGGCAAGAAAAAAGAAGAGTTTGTTCGATGC 1258 Query 1411 TTGGCTCAGAGTTCATGCACTAATCAGCCAATGAACACACCCAGATGaaaaaaaaGCAAG 1470 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 1259 TTGGCTCAGAGTTCATGCACTAATCAGCCAATGAACACACCCAGATGAAAAGAGAGCAAG 1318 Query 1471 CAAAGAAGCATAGAGCTCGGAGTTACAGTGACCCTTGCTTCTATAGGAAGCCTATTTTGA 1530 |||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 1319 CAAAGAAGCACGGAGCTCGGAGTTACAGTGACCCTTGCTTCTAAAGGAATCCTATTTTGA 1378 Query 1531 CTATAAG 1537 ||||||| Sbjct 1379 CTATAAG 1385 Score = 121 bits (65), Expect = 2e-26 Identities = 117/138 (85%), Gaps = 20/138 (14%) Strand=Plus/Plus Query 1545 CCTATTTTGACTATAAGAACTTGTTTCCAGCTAAGTTTTTGATAGATTGCTTCCATGGAA 1604 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | Sbjct 1369 CCTATTTTGACTATAAGAACTTGTTTCCAGCTTAGTTTTTGATAGATTGCTTCCAT-G-A 1426 Query 1605 TGCATCTTATCAGATATACTAGATTTTAATAAATTTCCTTGAAGGGTAGTAGATCGGTTA 1664 | | | | |||| | | | ||||||||||||||||||||||||||||||||| Sbjct 1427 T--A-C---T-AGAT-T--T--A----AATAAATTTCCTTGAAGGGTAGTAGATCGGTTA 1470 Query 1665 GTTTTGGTTATGCTGTTT 1682 ||||||||| | |||||| Sbjct 1471 GTTTTGGTT-T-CTGTTT 1486 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67952997080 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5