BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49250.1
Length=1810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485283 jgi|Araly1|485283|fgenesh2_kg.5__1275__AT3G49250.1 2139 0.0
> Ahg485283 jgi|Araly1|485283|fgenesh2_kg.5__1275__AT3G49250.1
Length=1522
Score = 2139 bits (1158), Expect = 0.0
Identities = 1313/1387 (95%), Gaps = 13/1387 (1%)
Strand=Plus/Plus
Query 162 GATTCTCCGGTGATAACATTGAAGCTGAGGAGCAATGTATCCGACTGGTCAACAGATTTC 221
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 GATTCTCCGGTGATAACATTGAAGCTGAGGAGCAATGTATCCGAATGGTCAACAGATTTC 60
Query 222 GTTTCAGACCACTCCGTTGAATGTTCAAGATCCAACAAGGATGATGAATTTGGATCAATC 281
||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 61 GTTTCAGACCACTCCTTTGAATGTTCAAGATCCAACAACGATGATGAATTTGGGTCAATC 120
Query 282 TTCACCAGTTGCAAGAAATGAAACTC---A--GA--A-T-GGAGGAGGCATTGCTCACGC 332
|||||||||| ||||| ||| ||||| | || | | ||||||||||||||||||||
Sbjct 121 TTCACCAGTTCCAAGAGATGTAACTCAGAATGGAGGAGTAGGAGGAGGCATTGCTCACGC 180
Query 333 TGAGTTTGCTATGTTCAATTCCAAGAGGCTTGAATCTGATCTTGAAGCTATGGGTAACAA 392
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 TGAGTTTGCTATGTTCAATTCCAAGAGGCTTCAATCTGATCTTGAAGCTATGGGTAACAA 240
Query 393 AATCAAACAGCATGAGGATAATCTCAAGTTTCTCAAGTCTCAGAAAAACAAAATGGATGA 452
| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 241 ACTCAAACAGCATGAGGATAATCTCAAGTTTCTCAAGTCACAGAAAAACAAATTGGATGA 300
Query 453 AGCTATCGTCGACTTGCAAGTTCATATGAGTAAGCTTAACTCGTCTCCTACTCCTAGAAG 512
||| |||||||||||||||||||||||||| |||||| | ||||||||||||| ||||||
Sbjct 301 AGCAATCGTCGACTTGCAAGTTCATATGAGCAAGCTTCATTCGTCTCCTACTCGTAGAAG 360
Query 513 TGAAAACTCTGATAACAGTCTTCAGGGTGAAGATATCAATGCACAGATCCTTCGCCACGA 572
|||||| | |||||||| |||||||||||||||||| |||| ||||||||||||||||||
Sbjct 361 TGAAAATTGTGATAACAATCTTCAGGGTGAAGATATTAATGAACAGATCCTTCGCCACGA 420
Query 573 AAACTCAGCTGCTGGAGTTTTAAGTCTGGTTGAGACTCT-TCATGGTGCTCAAGCTTCTC 631
|||||||||||||||||||||| |||||||||||||| | |||||| || || |||||||
Sbjct 421 AAACTCAGCTGCTGGAGTTTTAGGTCTGGTTGAGACT-TGTCATGGCGCGCAGGCTTCTC 479
Query 632 AGTTGATGTTGACAAAAGGTGTTGTTGGTGTTGTAGCGAAACTTGGGAAGGTCAATGATG 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGTTGATGTTGACAAAAGGTGTTGTTGGTGTTGTAGCGAAACTTGGGAAGGTCAATGATG 539
Query 692 AAAATCTCAGCCAGATTTTGTCGAATTATTTGGGGACTCGCTCAATGTTGGCAGTTGTAT 751
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAAATCTCAGCCAGATTTTATCGAATTATTTGGGGACTCGCTCAATGTTGGCAGTTGTAT 599
Query 752 GCAGGAATTATGAAAGTGTTACGGCTTTAGAGGCTTATGATAACCATGGCAACATTGATA 811
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 600 GCAGGAATTATGAAAGTGTTACGGCTTTAGAGGCTTATGATAACCAAGGCAACATTGATA 659
Query 812 TAAATGCTGGCCTTCATTGCCTTGGCTCTTCGATTGGAAGAGAG-ATTGGAGACAGTTTT 870
|||||||||||||||| |||||||| |||||||||| ||| | ||||||| || ||||
Sbjct 660 GAAATGCTGGCCTTCATGGCCTTGGCGCTTCGATTGGCAGA-ACCATTGGAGGCAATTTT 718
Query 871 GATGCCATCTGCCTTGAAAACCTGAGGCCGTATGTTGGTCAGCACATAGCTGATGATCTG 930
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 719 GATGCCATCTGCCTTGAAAACCTGAGGCCGTACGTTGGTCAGCACATAGCTGATGATCTG 778
Query 931 CAAAGAAGGCTTGATCTTCTGAAACCAAAATTACCTAATGGTGAGTGTCCTCCCGGGTTT 990
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 779 CAAAGAAGGCTTGATCTTCTGAAACCAAAATTGCCTAATGGTGAGTGTCCTCCCGGGTTT 838
Query 991 CTCGGATTTGCAGTGAATATGATACAGATCGATCCAGCTTACTTGCTCTGTGTCACATCA 1050
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 839 CTTGGATTTGCAGTGAATATGATACAAATCGATCCGGCTTACTTGCTCTGTGTCACATCA 898
Query 1051 TATGGATATGGTCTTCGTGAGACCTTGTTCTACAATCTATTCTCTCGCCTTCAAGTTTAC 1110
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 899 TATGGACATGGTCTTCGTGAGACCTTGTTCTACAGTCTATTCTCTCGCCTTCAAGTTTAC 958
Query 1111 AAAACAAGGGCCGATATGATTAGTGCCCTCCCATGCATAAGTGATGGTGCGGTATCTTTG 1170
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 959 AAAACAAGGGCCGATATGATTAGTGCCCTCCCATGCATAAGTGATGGTGCAGTATCTTTG 1018
Query 1171 GATGGAGGAATCATCAGGAAAACGGGGATCTTCAATCTTGGAAACCGTGATGAGGTGAAC 1230
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1019 GATGGAGGAATCATCAGGACACCGGGGATCTTCAATCTTGGAAACCGTGATGAGGTGAAT 1078
Query 1231 GTGAGATTTGCAAAGCCAACTGCTTCTCGCACGATGGACAACTATAGTGAGGCGGAGAAG 1290
|||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| |
Sbjct 1079 GTGAGATTTGCAAAGCCAACTGCTTCACGAACGATGGACAACTATAGTGAAGCGGAGAGG 1138
Query 1291 AAAATGAAAGAGCTGAAATGGAAAAAGGAGAAAACGCTGGAGGACATTAAGCGGGAGCAA 1350
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1139 AAAATGAAAGAGCTGAAATGGAAGAAGGAGAAAACGCTGGAGGACATTAAGCGAGAGCAA 1198
Query 1351 GTGCTCCGTGAGCATGCCGTCTTCAACTTTGGCAAGAAGAAAGAAGAATTTGTTCGATGC 1410
||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1199 GTGCTTCGTGAGCATGCTGTCTTCAACTTTGGCAAGAAAAAAGAAGAGTTTGTTCGATGC 1258
Query 1411 TTGGCTCAGAGTTCATGCACTAATCAGCCAATGAACACACCCAGATGaaaaaaaaGCAAG 1470
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1259 TTGGCTCAGAGTTCATGCACTAATCAGCCAATGAACACACCCAGATGAAAAGAGAGCAAG 1318
Query 1471 CAAAGAAGCATAGAGCTCGGAGTTACAGTGACCCTTGCTTCTATAGGAAGCCTATTTTGA 1530
|||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1319 CAAAGAAGCACGGAGCTCGGAGTTACAGTGACCCTTGCTTCTAAAGGAATCCTATTTTGA 1378
Query 1531 CTATAAG 1537
|||||||
Sbjct 1379 CTATAAG 1385
Score = 121 bits (65), Expect = 2e-26
Identities = 117/138 (85%), Gaps = 20/138 (14%)
Strand=Plus/Plus
Query 1545 CCTATTTTGACTATAAGAACTTGTTTCCAGCTAAGTTTTTGATAGATTGCTTCCATGGAA 1604
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 1369 CCTATTTTGACTATAAGAACTTGTTTCCAGCTTAGTTTTTGATAGATTGCTTCCAT-G-A 1426
Query 1605 TGCATCTTATCAGATATACTAGATTTTAATAAATTTCCTTGAAGGGTAGTAGATCGGTTA 1664
| | | | |||| | | | |||||||||||||||||||||||||||||||||
Sbjct 1427 T--A-C---T-AGAT-T--T--A----AATAAATTTCCTTGAAGGGTAGTAGATCGGTTA 1470
Query 1665 GTTTTGGTTATGCTGTTT 1682
||||||||| | ||||||
Sbjct 1471 GTTTTGGTT-T-CTGTTT 1486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67952997080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5