BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G49270.3

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg348023 jgi|Araly1|348023|fgenesh1_pg.C_scaffold_5001415           300    7e-81
  Ahg357142 jgi|Araly1|357142|fgenesh1_pg.C_scaffold_8000929           278    3e-74


> Ahg348023 jgi|Araly1|348023|fgenesh1_pg.C_scaffold_5001415
Length=837

 Score =  300 bits (162),  Expect = 7e-81
 Identities = 216/240 (90%), Gaps = 11/240 (5%)
 Strand=Plus/Plus

Query  41   ATGTTTTCAAAGATGCAGCTGGTGGTTCTCATGTCGTTCTTGCTCCTTCTTCCATTGTGT  100
            ||| ||||||||||| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct  1    ATGCTTTCAAAGATGAAGCTGGTGGTTCTCATGTCGTTCTTGCTCCTTCTCCCCTTGTGT  60

Query  101  TCTTCAAGGTTTGGAGAGAGCCATGAAGATGGAGTTCCTCACACCGACCAATATTCACTA  160
            |||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| ||
Sbjct  61   TCTTCAAGCTTTGGAGAGAGCCATGGAGATGGAGCTCCTCACACCGACCAATATTCAGTA  120

Query  161  AATATGGTTGAAGAGAGTATTCCGAAAATGATGGA-A------A--CAGGCACAAACCCA  211
            ||||||||||||||||||||||||||||||||||| |      |  ||||| ||||||||
Sbjct  121  AATATGGTTGAAGAGAGTATTCCGAAAATGATGGATAGTCCGGAAACAGGCCCAAACCCA  180

Query  212  AGCCACGATCAGACAACAAACGGTTGGGGTCGTCCTACGCGGCCACCGCCATCGCGGATG  271
            ||||||||||||| |  ||||||||||||||||||||| |||||||||||| | ||||||
Sbjct  181  AGCCACGATCAGAGAGTAAACGGTTGGGGTCGTCCTACACGGCCACCGCCA-C-CGGATG  238


> Ahg357142 jgi|Araly1|357142|fgenesh1_pg.C_scaffold_8000929
Length=531

 Score =  278 bits (150),  Expect = 3e-74
 Identities = 204/228 (89%), Gaps = 11/228 (5%)
 Strand=Plus/Plus

Query  53   ATGCAGCTGGTGGTTCTCATGTCGTTCTTGCTCCTTCTTCCATTGTGTTCTTCAAGGTTT  112
            ||| |||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct  1    ATGAAGCTGGTGGTTCTCATGTCGTTCTTGCTCCTTCTCCCCTTGTGTTCTTCAAGCTTT  60

Query  113  GGAGAGAGCCATGAAGATGGAGTTCCTCACACCGACCAATATTCACTAAATATGGTTGAA  172
            ||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct  61   GGAGAGAGCCATGGAGATGGAGCTCCTCACACCGACCAATATTCAGTAAATATGGTTGAA  120

Query  173  GAGAGTATTCCGAAAATGATGGA-A------A--CAGGCACAAACCCAAGCCACGATCAG  223
            ||||||||||||||||||||||| |      |  ||||| ||||||||||||||||||||
Sbjct  121  GAGAGTATTCCGAAAATGATGGATAGTCCGGAAACAGGCCCAAACCCAAGCCACGATCAG  180

Query  224  ACAACAAACGGTTGGGGTCGTCCTACGCGGCCACCGCCATCGCGGATG  271
            | |  ||||||||||||||||||||| ||||||||| || | ||||||
Sbjct  181  AGAGTAAACGGTTGGGGTCGTCCTACACGGCCACCGTCA-C-CGGATG  226



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18200215953


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5