BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49290.1
Length=1505
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485287 jgi|Araly1|485287|fgenesh2_kg.5__1279__AT3G49290.2 1670 0.0
Ahg489290 jgi|Araly1|489290|fgenesh2_kg.6__2424__AT5G24310.1 802 0.0
> Ahg485287 jgi|Araly1|485287|fgenesh2_kg.5__1279__AT3G49290.2
Length=1324
Score = 1670 bits (904), Expect = 0.0
Identities = 992/1035 (96%), Gaps = 3/1035 (0%)
Strand=Plus/Plus
Query 442 CTACAATGCCTGCGTCACATGAAGCTTCAAATTACGATGAGGTTTCTATGCAGCAAAGTA 501
|||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| |
Sbjct 292 CTACAATGCCTGCGTCACATGATGCATCAAATTACGATGAGGTTTCTATGCAACAAAGCA 351
Query 502 TGCTCTTCTCTGATGGTCTTCAGGACTTGAAGAATCTGCGAGCGCAGTTGTATTCAGCAG 561
|||||||||||||| ||||| |||||||||||||| |||| |||||||||||||| ||||
Sbjct 352 TGCTCTTCTCTGATAGTCTTAAGGACTTGAAGAATTTGCGTGCGCAGTTGTATTCGGCAG 411
Query 562 CCGAGTATTTCGAACTATCTTACACAACCGATGATAAAAAGCAGATTGTTGTAGAGACAC 621
| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 412 CTGAGTATTTCGAACTATCTTACACTACCGACGATAAAAAGCAGATAGTTGTAGAGACAC 471
Query 622 TGAAAGACTACGCTGTGAAGGCTCTGGTGAATACAGTTGACCATTTAGGCTCTGTTACAT 681
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 472 TGAAAGACTACGCTGTGAAGGCTTTGGTGAATACAGTTGACCATTTAGGCTCTGTTACAT 531
Query 682 ATAAAGTGAATGACTTTATCGATGAAAAAGTCGATGAAGTATCAGAGACCGAGCTGCGAG 741
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 532 ATAAAGTGAATGACTTTATCGATGAAAAAGTCGATGAAGTATCAGAGACCGAACTACGAG 591
Query 742 TATCTTGCATCGAACAGAGGCTAAGAATGTGCCAAGAGTATATGGATCATGAAGGGCGTT 801
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 592 TATCTTGCATTGAACAGAGGCTAAGGATGTGCCAAGAGTATATGGATCATGAAGGGCGTT 651
Query 802 CACAGCAATCACTTGTTATTGACACTCCAAAGTTCCATAAACGATACATCTTACCCGCGG 861
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 652 CACAGCAATCACTTGTTATCGACACTCCAAAGTTCCATAAGCGATACATCTTACCCGCTG 711
Query 862 GTGAAATTATGACTGCTACAAATCTTGAAAAGCTTAAGTACTTTGGAAGCAGTTTAGAGG 921
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 712 GTGAAATTATGACTGCTACCAATCTTGAAAAGCTTAAGTACTTTGGAAGCAGTTTAGAGG 771
Query 922 ATGCAGATGATTGGAACCAATTCCGAAATGCTGTTCGTGCTACAATCCGGGAAACGCCTC 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 772 ATGCAGATGATTGGAACCAATTCCGAAATGCTGTTCGTGCTACAATCCGGGAAACACCTC 831
Query 982 CACCACCTGTTAGAAAATCAACATCTCAGAGTTCATCTCCACGGCAACCACCTCAACGAT 1041
|||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||
Sbjct 832 CACCACCTGTTAGAAAATCAACATCTCAGACTCCATCTCCACGGCAACCACCTCAGCGAT 891
Query 1042 CAGCAACCTTTTCGTTTACCTCTACCATTCCAAAGAAAGAACAAGATAAGAGATCAGTTT 1101
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 892 CAGCAACCTTTTCGTTTACCTCCACCATTCCAAAGAAAGAACAAGATAAGAGATCAGTTT 951
Query 1102 CACCGCATCGGTTTCCACTACTAAGATCTGGATCAGTCGCTACCAGGAAGTCAGCATCAA 1161
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 952 CACCGCATCGGTTTCCACTACTAAGATCAGGATCAGTCGCTACCCGGAAGTCAGCATCAA 1011
Query 1162 TCAGCCGACCAACGACACCAAGCAAGAGCAGATCTATAACTCCTATACGGTATCCATCAG 1221
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 TCAGCCGACCAACGACACCTAGCAAGAGCAGATCTATAACTCCTATACGGTATCCATCAG 1071
Query 1222 AACCAAGAAGATCGGCTTCGGTCCGAGTCGCATTCGAGAAAGATAACCAGAAAGAAACAG 1281
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1072 AACCAAGAAGATCAGCTTCGGTCCGAGTCGCATTCGAGAAAGAAAACCAGAAGGAAACAG 1131
Query 1282 AGCAGCAACAACCGAGCAAGAGCAAACGATTGCTCAAGGCTTTGCTTAGTCGACGCAAAA 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 AGCAGCAACAACCGAGCAAGAGCAAACGATTGCTCAAGGCTTTGCTTAGTCGACGCAAAA 1191
Query 1342 CCAAGAAAGATGACACTCTCTACACTTTCTTGGACGAATACTGAAA-TGCCAATACCGGT 1400
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1192 CCAAGAAAGACGACACTCTCTACACTTTCTTGGACGAATACTGAAAATGCCAATTCCGGT 1251
Query 1401 TTTTATTTGTGCAAGCGCTTTACTAAACCGGAAAATTGTGGatttcctattttttctttt 1460
|| || |||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 TT--ATCTGTGGAAGCGCGTTACTAAACCGGAAAATTGTGGATTTCCTATTTTTTCTTTT 1309
Query 1461 atttttctatattat 1475
| ||||||||||||
Sbjct 1310 CTCTTTCTATATTAT 1324
> Ahg489290 jgi|Araly1|489290|fgenesh2_kg.6__2424__AT5G24310.1
Length=1418
Score = 802 bits (434), Expect = 0.0
Identities = 784/947 (83%), Gaps = 47/947 (5%)
Strand=Plus/Plus
Query 463 AAGCTTCAAATTACGATGAGGTTTCTATGCAGCAAAGTATGCTCTTCTCTGATGGTCTTC 522
|||| || |||||||||||| | |||||||| || || |||||||| |||||| | |||
Sbjct 346 AAGCATCTAATTACGATGAGATCTCTATGCAACAGAGCATGCTCTTTTCTGATAGCCTTA 405
Query 523 AGGACT-TGAAGAATCTGCGAGCGCAGTTGTATTCAGCAGCCGAGTATTTCGAACTATCT 581
|||| | |||| |||||| || | || |||||||||||||| |||||||||||||||||
Sbjct 406 AGGA-TCTGAAAAATCTGAGAACACAATTGTATTCAGCAGCTGAGTATTTCGAACTATCC 464
Query 582 TACACAACCGATG-ATAAAAAGCAGATTGTTGTAGAGACACTGAAAGACTACGCTG-TGA 639
||||||| ||||| | ||||| ||||| || || |||||||||||||| ||||| | | |
Sbjct 465 TACACAAACGATGAACAAAAA-CAGATAGTCGTGGAGACACTGAAAGATTACGC-GATAA 522
Query 640 AGGCTCTGGTGAATACAGTTGACCATTTAGGCTCTGTTACATATAAAGTGAATGACTTTA 699
||||| |||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 523 AGGCTTTGGTGAATACAGTTGACCATTTGGGATCTGTTACATATAAAGTCAATGACTTTG 582
Query 700 TCGATGAAAAAGTCGATGAAGTA-TCAGAGACCGAGCTGCGAGTATCTTGCATCGAACAG 758
||||||||||||| ||||||||| | || ||||| || ||||| ||||| || ||||||
Sbjct 583 TCGATGAAAAAGTTGATGAAGTAGCCGGA-ACCGAACTACGAGTGTCTTGTATTGAACAG 641
Query 759 AGGCTAAGAATGTGCCAAGAGTATATGGATCATGAAGGGCGTTCACAGCAATCACTTGTT 818
||| || | ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 642 AGGTTACGGATGTGCCAAGAGTATATGGATCATGAAGGTCGTTCACAGCAATCACTCGTG 701
Query 819 ATTGACACTCCAAAGTTCCATAAACGATACATCTTACCCGCGGGTGAAATTATGACTGCT 878
|| ||||||||||||||||| || ||||||||||| || |||| ||||| | || | |
Sbjct 702 ATCGACACTCCAAAGTTCCACAAGCGATACATCTTGCCTTCGGGCGAAATCAAGAGGGGT 761
Query 879 A-CAAATCTTGAAAAGCTTAAGTACT-TTGGAAGCAGTTTAGA-GGATGCAGATGATTGG 935
||| || | |||||| ||| | | ||| ||| ||||| || ||| | ||| || |||
Sbjct 762 GGCAAC-CTCGCAAAGCTAAAGAA-TGTTGAAAGTAGTTTTGATGGA-GAAGAGGACTGG 818
Query 936 AACCAATTCCGAAATGCTGTTCGTGCTACAATCCGGGAAACGCCTCCACCACCTGTTAGA 995
||||||||| |||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 819 AACCAATTCAGAAATGCTGTTCGTGCTACAATTCGTGAAACGCCTCCACCACCCGTTAGA 878
Query 996 AAATCAACATCT-CAGAGTTCATCTCCACGGCAACCACCTCAACGATCAGCAACCTTTTC 1054
||| | | || ||| | | |||| |||| || ||||||||| ||||||||||||||
Sbjct 879 AAACCGGTA-CTTCAGTCTCCCTCTCAACGG-AA--ACCTCAACGTTCAGCAACCTTTTC 934
Query 1055 GTT-TACCTCTA---CCATT-C-C-AAAGAAAGAACAAGATAAGAGATCAGTTTCACCGC 1107
||| | |||||| ||| | | ||||||||||||||||||| || |||| ||||| |
Sbjct 935 GTTCT-CCTCTATTGCCACGGCACCAAAGAAAGAACAAGATAAGCGAGCAGTATCACCAC 993
Query 1108 ATCGGTTTCCACTACTAAGATCTGGATCAGTCGCTA-CCAGGAAGTCAGCATCAATCAGC 1166
|||||||||| || ||||||||||| || || |||| || | | || |||||||||||
Sbjct 994 ATCGGTTTCCGCTTCTAAGATCTGGTTCGGTTGCTATCC-G-AC--CATCATCAATCAGC 1049
Query 1167 CGACCAACGACACCAAGCAAGAGCAGATCTA-TAACTCCTA-T---A--CGGTATCCATC 1219
| ||||| || || |||||||| ||| | | ||||||||| | | |||||||||||
Sbjct 1050 AGGCCAACAACCCCGAGCAAGAGTAGAGC-AGTAACTCCTACTCCTAAACGGTATCCATC 1108
Query 1220 AGAACCAAGAAGATCGGCTTCGGTCCGAGTCGCATTCGAGAAAGATAAC-CAGAAAGAAA 1278
|||||||||||||||||||||||| ||||| |||||||||||||| | | |||||||||
Sbjct 1109 AGAACCAAGAAGATCGGCTTCGGTTCGAGTTGCATTCGAGAAAGA-AGCACAGAAAGAAC 1167
Query 1279 CAGAGCAGCAACAAC--C-GAGCAAGAGCAAACGATTGCTCAAGGCTTTGCTTAGTCGAC 1335
|||| || ||||||| | ||||||||||||||| |||| ||||| |||||||| ||||
Sbjct 1168 CAGAACATCAACAACAACCGAGCAAGAGCAAACGGCTGCTTAAGGCGTTGCTTAGCCGAC 1227
Query 1336 GCAAAACCAAGAAAGATGACACTCTCTACACTT-TCTTGGACGAATA 1381
|||||||||||||||| || || |||||||||| | |||||||||||
Sbjct 1228 GCAAAACCAAGAAAGACGATACGCTCTACACTTAT-TTGGACGAATA 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56335472355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5