BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G49300.1

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485289 jgi|Araly1|485289|fgenesh2_kg.5__1281__AT3G49300.1         560    3e-159


> Ahg485289 jgi|Araly1|485289|fgenesh2_kg.5__1281__AT3G49300.1
Length=470

 Score =  560 bits (303),  Expect = 3e-159
 Identities = 425/479 (89%), Gaps = 28/479 (6%)
 Strand=Plus/Plus

Query  12   aaaaaTGCTTTCAAAGATAAAGCCGGTGGTTCTCATGTCGTTCTTGCTTCTGTTTCCATT  71
            |||||||||||||||||| |||| || ||||||||||||||||||||||||| |||||||
Sbjct  1    AAAAATGCTTTCAAAGATGAAGCTGGCGGTTCTCATGTCGTTCTTGCTTCTGCTTCCATT  60

Query  72   GTGTTCTTCGGGGTTTAGAGAAGGCCATGGAGTTACTCACACCGACCAAAATTCCTTAAA  131
            ||||||||||||||| ||||| |||||||||||| ||||| |||||||| ||||||||||
Sbjct  61   GTGTTCTTCGGGGTTAAGAGAGGGCCATGGAGTTGCTCACTCCGACCAATATTCCTTAAA  120

Query  132  CAAGGTTGAAGAGAGTATTCCAACGATCATGGATTATCCGGAACCAGGTCCAGACCCGAA  191
            ||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct  121  CAAGGTTGACGAGAGTATTCCGACGATCATGGATTATCCGGAACCAGGCCCAGACCCAAA  180

Query  192  ACACGATCCAACAAAACCCGGTTATGGTTTTCCTCCCCCACCGCCACCGCCACTGTCACC  251
            |||||||||||||||||||||||||||||||||||| |||||||| ||||| ||   |||
Sbjct  181  ACACGATCCAACAAAACCCGGTTATGGTTTTCCTCCGCCACCGCCGCCGCCGCT---ACC  237

Query  252  GCCACCGCCACCGAAGATGAACTAAGAATCATGATGAAGCAAAAATATGTAATA-TCGTT  310
             ||| |   |||||||||||||||||||||| |||||||||||||||| ||||| | || 
Sbjct  238  ACCATC---ACCGAAGATGAACTAAGAATCAGGATGAAGCAAAAATATCTAATAAT-GT-  292

Query  311  AAATCATGCTCGTGAGAAGAACTAGTATTCATGTGAAGCAAAAGAAAAA--------CTT  362
            |||||||||||| ||||||||||||||||| |||||||||||| |||||        || 
Sbjct  293  AAATCATGCTCGCGAGAAGAACTAGTATTC-TGTGAAGCAAAAAAAAAAAAAAAAAACTG  351

Query  363  AAATATGATGATTCTATGATATGTACTATCAAAGTAATCAATCAAATA-T-AAAA-G---  416
            |||||||||||||||||||||||||||||||||||||||||| ||||| | |||| |   
Sbjct  352  AAATATGATGATTCTATGATATGTACTATCAAAGTAATCAATTAAATAATTAAAATGTTC  411

Query  417  AGTAAATTTGG--AAA-AATTGGTCAATTGTTTGA-TCTTTGAtttttttCCTATTTAT  471
            | |||||||||  ||| |||||||||||||||||| || ||||||||||||||||||||
Sbjct  412  AATAAATTTGGTCAAAGAATTGGTCAATTGTTTGAATCATTGATTTTTTTCCTATTTAT  470



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17170015050


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5