BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G49307.1
Length=535
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485290 jgi|Araly1|485290|fgenesh2_kg.5__1282__AT3G49307.1 695 0.0
> Ahg485290 jgi|Araly1|485290|fgenesh2_kg.5__1282__AT3G49307.1
Length=531
Score = 695 bits (376), Expect = 0.0
Identities = 490/541 (91%), Gaps = 23/541 (4%)
Strand=Plus/Plus
Query 4 TTTTCTTTGTCAAAGATCCTTAGAAAACTTTTA-T--TCATTTTGATATATCATATTCAA 60
|||||||||||||||| |||||||||||||||| | |||||||||||| | |||||||
Sbjct 1 TTTTCTTTGTCAAAGACCCTTAGAAAACTTTTATTCATCATTTTGATAT-T-ATATTCAT 58
Query 61 TCCTCCAAAATTATCAACAAACAAGCAATCCATTTCA-TATGT-CCAATTTAGTTACGTG 118
|||||||||||||| ||||||||| ||||| |||||| | ||| ||||||| |||||||
Sbjct 59 TCCTCCAAAATTATAAACAAACAAACAATCTATTTCACT-TGTACCAATTTCCTTACGTG 117
Query 119 TTACTAAAAAACAGTTTAACTCGAATTCCATTTTATTCAAACCTGATTCTCCTATATATC 178
|| ||||||| |||||||| |||||||||||||| ||||||| |||||||| ||||
Sbjct 118 TT-TTAAAAAAAAGTTTAACACGAATTCCATTTTA-TCAAACCCGATTCTCC----TATC 171
Query 179 CACAAATATGAAGTTGGTGGTTCTCTTCTCGTTCTTGCTCATGTTTTCATTGTGTTCTTC 238
|||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 172 CACAAAGATGAAGTTGGTAGTTTTCTTCTCGTTCTTGCTCATGTTTTCATTGTGTTCTTC 231
Query 239 AGGGTTTAAGGAGGACCTTGGTGCTATTCATATCGATCAATATTCCTCAGACAAGATTAA 298
|||||| |||||||||||||||| || ||||||||||||||||||||||| |||| ||||
Sbjct 232 AGGGTTGAAGGAGGACCTTGGTGTTACTCATATCGATCAATATTCCTCAGGCAAGGTTAA 291
Query 299 AAATAGTATTGAGAATCTGATGGACTATCC------TGGTCCCAACGAACCTGGACGACG 352
| | |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 292 AGAGAGTATTGAGAATCTGATGGACTATCCAGAACCTGGTCCCAACGAACCTGGACGACG 351
Query 353 TTATCCTGGACGTCCACATGGACCACATGCC-CCGCGTCCTAGGATGAAGAAGAAGAACC 411
|||||||||||||||||||||||||||| || |||| || ||||||||||||||||||||
Sbjct 352 TTATCCTGGACGTCCACATGGACCACAT-CCTCCGCATCTTAGGATGAAGAAGAAGAACC 410
Query 412 CATAGTGGAGAACAAAATATGTAATATATATTGATGATGCAACATTCTATAATATAGTGG 471
|||| ||||||||||||| |||||||||||||||||||||||| || ||||||||| |||
Sbjct 411 CATAATGGAGAACAAAATGTGTAATATATATTGATGATGCAACGTTTTATAATATACTGG 470
Query 472 AGAA-AAATATATGTAATATTGGTTCAATCCATCCTTATAATCATCAATAAATTCTAACT 530
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 AGAAGAAATATATGTAATATTGGTTCAATCCATCCTTATAATCATCAATAAATTCTAACT 530
Query 531 A 531
|
Sbjct 531 A 531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19497505979
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5